Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02590 and BACOVA_02591 overlap by 4 nucleotides BACOVA_02591 and BACOVA_02592 are separated by 121 nucleotides BACOVA_02592 and BACOVA_02593 are separated by 67 nucleotides
BACOVA_02590: BACOVA_02590 - aspartate--tRNA ligase, at 360,253 to 362,088
_02590
BACOVA_02591: BACOVA_02591 - GtrA-like protein, at 362,085 to 362,474
_02591
BACOVA_02592: BACOVA_02592 - hydrolase, carbon-nitrogen family, at 362,596 to 363,480
_02592
BACOVA_02593: BACOVA_02593 - hypothetical protein, at 363,548 to 364,669
_02593
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 362.104 kb on + strand at 362.116 kb on + strand at 362.196 kb on + strand, within BACOVA_02591 at 362.210 kb on + strand, within BACOVA_02591 at 362.212 kb on + strand, within BACOVA_02591 at 362.212 kb on + strand, within BACOVA_02591 at 362.220 kb on + strand, within BACOVA_02591 at 362.220 kb on + strand, within BACOVA_02591 at 362.227 kb on + strand, within BACOVA_02591 at 362.246 kb on + strand, within BACOVA_02591 at 362.291 kb on + strand, within BACOVA_02591 at 362.312 kb on - strand, within BACOVA_02591 at 362.341 kb on - strand, within BACOVA_02591 at 362.374 kb on + strand, within BACOVA_02591 at 362.428 kb on - strand, within BACOVA_02591 at 362.446 kb on + strand at 362.481 kb on + strand at 362.482 kb on - strand at 362.493 kb on + strand at 362.495 kb on + strand at 362.495 kb on + strand at 362.561 kb on + strand at 362.617 kb on - strand at 362.617 kb on - strand at 362.627 kb on + strand at 362.628 kb on - strand at 362.695 kb on + strand, within BACOVA_02592 at 362.828 kb on - strand, within BACOVA_02592 at 362.963 kb on - strand, within BACOVA_02592 at 362.981 kb on - strand, within BACOVA_02592 at 363.025 kb on + strand, within BACOVA_02592 at 363.025 kb on + strand, within BACOVA_02592 at 363.026 kb on - strand, within BACOVA_02592 at 363.028 kb on + strand, within BACOVA_02592 at 363.028 kb on + strand, within BACOVA_02592 at 363.029 kb on - strand, within BACOVA_02592 at 363.029 kb on - strand, within BACOVA_02592 at 363.032 kb on - strand, within BACOVA_02592 at 363.092 kb on + strand, within BACOVA_02592 at 363.092 kb on + strand, within BACOVA_02592 at 363.092 kb on + strand, within BACOVA_02592 at 363.104 kb on + strand, within BACOVA_02592 at 363.235 kb on + strand, within BACOVA_02592 at 363.241 kb on - strand, within BACOVA_02592 at 363.244 kb on - strand, within BACOVA_02592 at 363.264 kb on - strand, within BACOVA_02592 at 363.335 kb on + strand, within BACOVA_02592 at 363.399 kb on + strand at 363.430 kb on + strand at 363.488 kb on - strand at 363.492 kb on - strand at 363.562 kb on + strand at 363.613 kb on + strand at 363.671 kb on + strand, within BACOVA_02593 at 363.672 kb on - strand, within BACOVA_02593 at 363.706 kb on - strand, within BACOVA_02593 at 363.708 kb on + strand, within BACOVA_02593 at 363.882 kb on + strand, within BACOVA_02593 at 363.970 kb on + strand, within BACOVA_02593 at 363.970 kb on + strand, within BACOVA_02593 at 363.999 kb on - strand, within BACOVA_02593 at 364.038 kb on + strand, within BACOVA_02593 at 364.114 kb on + strand, within BACOVA_02593 at 364.114 kb on + strand, within BACOVA_02593 at 364.151 kb on + strand, within BACOVA_02593 at 364.169 kb on + strand, within BACOVA_02593 at 364.169 kb on + strand, within BACOVA_02593 at 364.169 kb on + strand, within BACOVA_02593 at 364.170 kb on - strand, within BACOVA_02593 at 364.170 kb on - strand, within BACOVA_02593 at 364.171 kb on + strand, within BACOVA_02593 at 364.200 kb on - strand, within BACOVA_02593 at 364.292 kb on - strand, within BACOVA_02593 at 364.304 kb on + strand, within BACOVA_02593 at 364.305 kb on - strand, within BACOVA_02593 at 364.427 kb on + strand, within BACOVA_02593 at 364.428 kb on - strand, within BACOVA_02593 at 364.459 kb on + strand, within BACOVA_02593 at 364.460 kb on - strand, within BACOVA_02593 at 364.465 kb on + strand, within BACOVA_02593
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 362,104 + +0.8 362,116 + +1.0 362,196 + BACOVA_02591 0.28 -0.1 362,210 + BACOVA_02591 0.32 -1.5 362,212 + BACOVA_02591 0.33 +0.3 362,212 + BACOVA_02591 0.33 -0.0 362,220 + BACOVA_02591 0.35 -0.3 362,220 + BACOVA_02591 0.35 +1.2 362,227 + BACOVA_02591 0.36 -0.5 362,246 + BACOVA_02591 0.41 +2.1 362,291 + BACOVA_02591 0.53 -0.7 362,312 - BACOVA_02591 0.58 -0.9 362,341 - BACOVA_02591 0.66 +0.1 362,374 + BACOVA_02591 0.74 +0.5 362,428 - BACOVA_02591 0.88 +1.1 362,446 + -0.2 362,481 + -1.7 362,482 - -0.3 362,493 + +0.4 362,495 + -0.5 362,495 + +0.5 362,561 + +1.1 362,617 - -1.5 362,617 - +0.5 362,627 + -2.2 362,628 - -0.5 362,695 + BACOVA_02592 0.11 -1.7 362,828 - BACOVA_02592 0.26 -1.9 362,963 - BACOVA_02592 0.41 +1.1 362,981 - BACOVA_02592 0.44 -1.8 363,025 + BACOVA_02592 0.48 -2.6 363,025 + BACOVA_02592 0.48 -1.1 363,026 - BACOVA_02592 0.49 -0.3 363,028 + BACOVA_02592 0.49 -0.5 363,028 + BACOVA_02592 0.49 -1.0 363,029 - BACOVA_02592 0.49 +0.5 363,029 - BACOVA_02592 0.49 -1.6 363,032 - BACOVA_02592 0.49 -0.9 363,092 + BACOVA_02592 0.56 -1.2 363,092 + BACOVA_02592 0.56 -2.8 363,092 + BACOVA_02592 0.56 +0.1 363,104 + BACOVA_02592 0.57 -0.9 363,235 + BACOVA_02592 0.72 -1.9 363,241 - BACOVA_02592 0.73 -1.7 363,244 - BACOVA_02592 0.73 -0.5 363,264 - BACOVA_02592 0.75 -0.5 363,335 + BACOVA_02592 0.84 -0.7 363,399 + -0.6 363,430 + -1.5 363,488 - +0.3 363,492 - +0.4 363,562 + +0.1 363,613 + +0.1 363,671 + BACOVA_02593 0.11 -1.1 363,672 - BACOVA_02593 0.11 +0.1 363,706 - BACOVA_02593 0.14 -0.3 363,708 + BACOVA_02593 0.14 -0.5 363,882 + BACOVA_02593 0.30 -1.2 363,970 + BACOVA_02593 0.38 +0.1 363,970 + BACOVA_02593 0.38 -0.5 363,999 - BACOVA_02593 0.40 -1.7 364,038 + BACOVA_02593 0.44 -0.9 364,114 + BACOVA_02593 0.50 -1.7 364,114 + BACOVA_02593 0.50 -0.4 364,151 + BACOVA_02593 0.54 -1.5 364,169 + BACOVA_02593 0.55 +0.5 364,169 + BACOVA_02593 0.55 -1.7 364,169 + BACOVA_02593 0.55 -2.3 364,170 - BACOVA_02593 0.55 -1.2 364,170 - BACOVA_02593 0.55 -0.9 364,171 + BACOVA_02593 0.56 -1.5 364,200 - BACOVA_02593 0.58 +0.1 364,292 - BACOVA_02593 0.66 -1.9 364,304 + BACOVA_02593 0.67 -1.2 364,305 - BACOVA_02593 0.67 +0.1 364,427 + BACOVA_02593 0.78 -2.3 364,428 - BACOVA_02593 0.78 -1.7 364,459 + BACOVA_02593 0.81 +0.1 364,460 - BACOVA_02593 0.81 -0.5 364,465 + BACOVA_02593 0.82 +0.1
Or see this region's nucleotide sequence