Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01326

Experiment: Pectin from apple; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01324 and BACOVA_01325 are separated by 181 nucleotidesBACOVA_01325 and BACOVA_01326 overlap by 23 nucleotidesBACOVA_01326 and BACOVA_01328 are separated by 25 nucleotides BACOVA_01324: BACOVA_01324 - hypothetical protein, at 129,775 to 132,519 _01324 BACOVA_01325: BACOVA_01325 - hypothetical protein, at 132,701 to 133,483 _01325 BACOVA_01326: BACOVA_01326 - hypothetical protein, at 133,461 to 133,844 _01326 BACOVA_01328: BACOVA_01328 - hypothetical protein, at 133,870 to 135,486 _01328 Position (kb) 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 132.468 kb on + strandat 132.469 kb on - strandat 132.469 kb on - strandat 132.477 kb on + strandat 132.477 kb on + strandat 132.490 kb on + strandat 132.490 kb on + strandat 132.490 kb on + strandat 132.491 kb on - strandat 132.491 kb on - strandat 132.497 kb on - strandat 132.520 kb on - strandat 132.558 kb on + strandat 132.558 kb on + strandat 132.559 kb on - strandat 132.596 kb on - strandat 132.627 kb on + strandat 132.646 kb on + strandat 132.649 kb on + strandat 132.667 kb on + strandat 132.673 kb on + strandat 132.699 kb on - strandat 132.708 kb on + strandat 132.725 kb on - strandat 132.733 kb on + strandat 132.733 kb on + strandat 132.797 kb on + strand, within BACOVA_01325at 132.797 kb on + strand, within BACOVA_01325at 132.798 kb on - strand, within BACOVA_01325at 132.798 kb on - strand, within BACOVA_01325at 132.801 kb on + strand, within BACOVA_01325at 132.802 kb on - strand, within BACOVA_01325at 132.963 kb on + strand, within BACOVA_01325at 132.964 kb on - strand, within BACOVA_01325at 133.032 kb on + strand, within BACOVA_01325at 133.044 kb on + strand, within BACOVA_01325at 133.069 kb on - strand, within BACOVA_01325at 133.071 kb on + strand, within BACOVA_01325at 133.072 kb on - strand, within BACOVA_01325at 133.123 kb on + strand, within BACOVA_01325at 133.124 kb on - strand, within BACOVA_01325at 133.131 kb on + strand, within BACOVA_01325at 133.146 kb on + strand, within BACOVA_01325at 133.175 kb on + strand, within BACOVA_01325at 133.227 kb on + strand, within BACOVA_01325at 133.233 kb on + strand, within BACOVA_01325at 133.245 kb on + strand, within BACOVA_01325at 133.246 kb on - strand, within BACOVA_01325at 133.246 kb on - strand, within BACOVA_01325at 133.278 kb on + strand, within BACOVA_01325at 133.283 kb on - strand, within BACOVA_01325at 133.300 kb on - strand, within BACOVA_01325at 133.402 kb on + strand, within BACOVA_01325at 133.402 kb on + strand, within BACOVA_01325at 133.477 kb on + strandat 133.477 kb on + strandat 133.478 kb on - strandat 133.478 kb on - strandat 133.479 kb on + strandat 133.479 kb on + strandat 133.480 kb on - strandat 133.485 kb on + strandat 133.569 kb on + strand, within BACOVA_01326at 133.569 kb on + strand, within BACOVA_01326at 133.585 kb on - strand, within BACOVA_01326at 133.634 kb on + strand, within BACOVA_01326at 133.634 kb on + strand, within BACOVA_01326at 133.635 kb on - strand, within BACOVA_01326at 133.672 kb on + strand, within BACOVA_01326at 133.672 kb on + strand, within BACOVA_01326at 133.672 kb on + strand, within BACOVA_01326at 133.673 kb on - strand, within BACOVA_01326at 133.703 kb on - strand, within BACOVA_01326at 133.762 kb on + strand, within BACOVA_01326at 133.763 kb on - strand, within BACOVA_01326at 133.763 kb on - strand, within BACOVA_01326at 133.763 kb on - strand, within BACOVA_01326at 133.794 kb on - strand, within BACOVA_01326at 133.838 kb on - strandat 133.884 kb on + strandat 133.886 kb on + strandat 133.886 kb on + strandat 134.013 kb on + strandat 134.014 kb on - strandat 134.023 kb on + strandat 134.051 kb on + strand, within BACOVA_01328at 134.051 kb on + strand, within BACOVA_01328at 134.051 kb on + strand, within BACOVA_01328at 134.051 kb on + strand, within BACOVA_01328at 134.113 kb on + strand, within BACOVA_01328at 134.113 kb on + strand, within BACOVA_01328at 134.123 kb on - strand, within BACOVA_01328at 134.211 kb on + strand, within BACOVA_01328at 134.211 kb on + strand, within BACOVA_01328at 134.253 kb on + strand, within BACOVA_01328at 134.254 kb on - strand, within BACOVA_01328at 134.259 kb on + strand, within BACOVA_01328at 134.295 kb on + strand, within BACOVA_01328at 134.305 kb on - strand, within BACOVA_01328at 134.305 kb on - strand, within BACOVA_01328at 134.359 kb on - strand, within BACOVA_01328at 134.386 kb on + strand, within BACOVA_01328at 134.387 kb on - strand, within BACOVA_01328at 134.391 kb on + strand, within BACOVA_01328at 134.392 kb on - strand, within BACOVA_01328at 134.392 kb on - strand, within BACOVA_01328at 134.400 kb on - strand, within BACOVA_01328at 134.457 kb on + strand, within BACOVA_01328at 134.457 kb on + strand, within BACOVA_01328at 134.457 kb on + strand, within BACOVA_01328at 134.457 kb on + strand, within BACOVA_01328at 134.461 kb on + strand, within BACOVA_01328at 134.462 kb on - strand, within BACOVA_01328at 134.462 kb on - strand, within BACOVA_01328at 134.462 kb on - strand, within BACOVA_01328at 134.515 kb on - strand, within BACOVA_01328at 134.515 kb on - strand, within BACOVA_01328at 134.516 kb on + strand, within BACOVA_01328at 134.516 kb on + strand, within BACOVA_01328at 134.517 kb on - strand, within BACOVA_01328at 134.616 kb on - strand, within BACOVA_01328at 134.619 kb on + strand, within BACOVA_01328at 134.620 kb on - strand, within BACOVA_01328at 134.780 kb on + strand, within BACOVA_01328at 134.780 kb on + strand, within BACOVA_01328at 134.781 kb on - strand, within BACOVA_01328at 134.800 kb on + strand, within BACOVA_01328at 134.801 kb on - strand, within BACOVA_01328

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C)
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132,468 + +0.1
132,469 - -2.2
132,469 - -0.4
132,477 + -0.3
132,477 + +1.3
132,490 + +0.6
132,490 + +1.9
132,490 + +0.7
132,491 - +1.0
132,491 - -0.3
132,497 - +1.0
132,520 - -0.2
132,558 + +0.4
132,558 + -0.2
132,559 - +0.6
132,596 - +0.7
132,627 + +0.5
132,646 + +1.6
132,649 + -0.7
132,667 + +0.3
132,673 + -0.3
132,699 - -0.6
132,708 + -2.3
132,725 - +2.3
132,733 + -0.3
132,733 + -0.3
132,797 + BACOVA_01325 0.12 -0.3
132,797 + BACOVA_01325 0.12 -0.6
132,798 - BACOVA_01325 0.12 -0.0
132,798 - BACOVA_01325 0.12 +0.7
132,801 + BACOVA_01325 0.13 -1.3
132,802 - BACOVA_01325 0.13 +1.1
132,963 + BACOVA_01325 0.33 -0.3
132,964 - BACOVA_01325 0.34 -0.3
133,032 + BACOVA_01325 0.42 -0.2
133,044 + BACOVA_01325 0.44 +1.3
133,069 - BACOVA_01325 0.47 +2.3
133,071 + BACOVA_01325 0.47 -1.7
133,072 - BACOVA_01325 0.47 +1.3
133,123 + BACOVA_01325 0.54 +1.5
133,124 - BACOVA_01325 0.54 +1.2
133,131 + BACOVA_01325 0.55 -0.0
133,146 + BACOVA_01325 0.57 +1.3
133,175 + BACOVA_01325 0.61 -1.0
133,227 + BACOVA_01325 0.67 +1.1
133,233 + BACOVA_01325 0.68 -0.0
133,245 + BACOVA_01325 0.69 +0.2
133,246 - BACOVA_01325 0.70 +2.5
133,246 - BACOVA_01325 0.70 +0.1
133,278 + BACOVA_01325 0.74 +0.2
133,283 - BACOVA_01325 0.74 -0.2
133,300 - BACOVA_01325 0.77 -0.0
133,402 + BACOVA_01325 0.90 -0.5
133,402 + BACOVA_01325 0.90 -1.0
133,477 + -3.7
133,477 + +0.0
133,478 - +1.0
133,478 - -0.9
133,479 + -0.3
133,479 + -0.5
133,480 - -1.3
133,485 + -1.3
133,569 + BACOVA_01326 0.28 -0.3
133,569 + BACOVA_01326 0.28 -0.5
133,585 - BACOVA_01326 0.32 +0.5
133,634 + BACOVA_01326 0.45 -1.5
133,634 + BACOVA_01326 0.45 -1.0
133,635 - BACOVA_01326 0.45 +1.9
133,672 + BACOVA_01326 0.55 -1.4
133,672 + BACOVA_01326 0.55 +1.3
133,672 + BACOVA_01326 0.55 -1.0
133,673 - BACOVA_01326 0.55 -0.1
133,703 - BACOVA_01326 0.63 +1.9
133,762 + BACOVA_01326 0.78 -0.6
133,763 - BACOVA_01326 0.79 +0.0
133,763 - BACOVA_01326 0.79 +0.6
133,763 - BACOVA_01326 0.79 +1.0
133,794 - BACOVA_01326 0.87 -2.0
133,838 - -0.3
133,884 + -0.2
133,886 + -1.4
133,886 + -0.2
134,013 + -1.3
134,014 - -1.5
134,023 + +0.3
134,051 + BACOVA_01328 0.11 -0.8
134,051 + BACOVA_01328 0.11 -0.8
134,051 + BACOVA_01328 0.11 -1.7
134,051 + BACOVA_01328 0.11 -2.6
134,113 + BACOVA_01328 0.15 -1.9
134,113 + BACOVA_01328 0.15 +0.4
134,123 - BACOVA_01328 0.16 +0.5
134,211 + BACOVA_01328 0.21 -1.3
134,211 + BACOVA_01328 0.21 -0.3
134,253 + BACOVA_01328 0.24 +1.5
134,254 - BACOVA_01328 0.24 +0.4
134,259 + BACOVA_01328 0.24 -0.0
134,295 + BACOVA_01328 0.26 -0.3
134,305 - BACOVA_01328 0.27 +0.0
134,305 - BACOVA_01328 0.27 +0.6
134,359 - BACOVA_01328 0.30 -0.1
134,386 + BACOVA_01328 0.32 -1.5
134,387 - BACOVA_01328 0.32 +1.5
134,391 + BACOVA_01328 0.32 -0.3
134,392 - BACOVA_01328 0.32 -1.2
134,392 - BACOVA_01328 0.32 +1.3
134,400 - BACOVA_01328 0.33 +1.3
134,457 + BACOVA_01328 0.36 -0.3
134,457 + BACOVA_01328 0.36 -0.1
134,457 + BACOVA_01328 0.36 +0.2
134,457 + BACOVA_01328 0.36 -0.6
134,461 + BACOVA_01328 0.37 -2.0
134,462 - BACOVA_01328 0.37 -0.5
134,462 - BACOVA_01328 0.37 -0.8
134,462 - BACOVA_01328 0.37 -0.0
134,515 - BACOVA_01328 0.40 +3.2
134,515 - BACOVA_01328 0.40 -0.6
134,516 + BACOVA_01328 0.40 -0.4
134,516 + BACOVA_01328 0.40 +0.4
134,517 - BACOVA_01328 0.40 -0.6
134,616 - BACOVA_01328 0.46 -0.7
134,619 + BACOVA_01328 0.46 +0.6
134,620 - BACOVA_01328 0.46 +0.3
134,780 + BACOVA_01328 0.56 +1.7
134,780 + BACOVA_01328 0.56 -1.9
134,781 - BACOVA_01328 0.56 -1.0
134,800 + BACOVA_01328 0.58 -1.0
134,801 - BACOVA_01328 0.58 -0.4

Or see this region's nucleotide sequence