Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01057 and BACOVA_01058 are separated by 12 nucleotides BACOVA_01058 and BACOVA_01059 are separated by 94 nucleotides
BACOVA_01057: BACOVA_01057 - hypothetical protein, at 264,779 to 266,002
_01057
BACOVA_01058: BACOVA_01058 - glutamate--tRNA ligase, at 266,015 to 267,532
_01058
BACOVA_01059: BACOVA_01059 - hypothetical protein, at 267,627 to 269,699
_01059
Position (kb) 266
267
268 Strain fitness (log2 ratio) -2
-1
0
1
2 at 267.546 kb on - strand at 267.548 kb on - strand at 267.548 kb on - strand at 267.552 kb on - strand at 267.671 kb on - strand at 267.671 kb on - strand at 267.677 kb on + strand at 267.717 kb on + strand at 267.809 kb on + strand at 267.814 kb on - strand at 267.874 kb on - strand, within BACOVA_01059 at 267.895 kb on + strand, within BACOVA_01059 at 267.930 kb on + strand, within BACOVA_01059 at 267.951 kb on - strand, within BACOVA_01059 at 268.035 kb on - strand, within BACOVA_01059 at 268.035 kb on - strand, within BACOVA_01059 at 268.036 kb on + strand, within BACOVA_01059 at 268.037 kb on - strand, within BACOVA_01059 at 268.120 kb on - strand, within BACOVA_01059 at 268.209 kb on + strand, within BACOVA_01059 at 268.245 kb on - strand, within BACOVA_01059 at 268.279 kb on - strand, within BACOVA_01059 at 268.279 kb on - strand, within BACOVA_01059 at 268.279 kb on - strand, within BACOVA_01059 at 268.349 kb on + strand, within BACOVA_01059 at 268.350 kb on - strand, within BACOVA_01059 at 268.353 kb on + strand, within BACOVA_01059 at 268.353 kb on + strand, within BACOVA_01059 at 268.354 kb on - strand, within BACOVA_01059 at 268.358 kb on + strand, within BACOVA_01059 at 268.447 kb on + strand, within BACOVA_01059 at 268.469 kb on + strand, within BACOVA_01059 at 268.504 kb on - strand, within BACOVA_01059
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 267,546 - -0.6 267,548 - -0.4 267,548 - -0.2 267,552 - +0.4 267,671 - +0.7 267,671 - +1.3 267,677 + -1.0 267,717 + -1.4 267,809 + -1.1 267,814 - -1.2 267,874 - BACOVA_01059 0.12 +0.5 267,895 + BACOVA_01059 0.13 -0.4 267,930 + BACOVA_01059 0.15 +2.3 267,951 - BACOVA_01059 0.16 +0.2 268,035 - BACOVA_01059 0.20 -1.2 268,035 - BACOVA_01059 0.20 -0.6 268,036 + BACOVA_01059 0.20 -0.3 268,037 - BACOVA_01059 0.20 +0.3 268,120 - BACOVA_01059 0.24 -1.7 268,209 + BACOVA_01059 0.28 +0.9 268,245 - BACOVA_01059 0.30 +1.3 268,279 - BACOVA_01059 0.31 +0.3 268,279 - BACOVA_01059 0.31 +0.1 268,279 - BACOVA_01059 0.31 +0.7 268,349 + BACOVA_01059 0.35 +0.1 268,350 - BACOVA_01059 0.35 +1.1 268,353 + BACOVA_01059 0.35 -0.6 268,353 + BACOVA_01059 0.35 -0.5 268,354 - BACOVA_01059 0.35 -1.1 268,358 + BACOVA_01059 0.35 +0.6 268,447 + BACOVA_01059 0.40 -1.9 268,469 + BACOVA_01059 0.41 -1.6 268,504 - BACOVA_01059 0.42 -0.2
Or see this region's nucleotide sequence