Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01052 and BACOVA_01053 are separated by 148 nucleotides BACOVA_01053 and BACOVA_01054 are separated by 290 nucleotides BACOVA_01054 and BACOVA_01055 overlap by 4 nucleotides
BACOVA_01052: BACOVA_01052 - hypothetical protein, at 258,926 to 260,707
_01052
BACOVA_01053: BACOVA_01053 - hexapeptide transferase family protein, at 260,856 to 261,371
_01053
BACOVA_01054: BACOVA_01054 - hypothetical protein, at 261,662 to 262,873
_01054
BACOVA_01055: BACOVA_01055 - hypothetical protein, at 262,870 to 264,504
_01055
Position (kb) 261
262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 260.782 kb on + strand at 260.783 kb on - strand at 260.806 kb on - strand at 260.812 kb on + strand at 260.812 kb on + strand at 260.812 kb on + strand at 260.813 kb on - strand at 260.813 kb on - strand at 260.823 kb on + strand at 260.827 kb on + strand at 260.850 kb on + strand at 260.850 kb on + strand at 260.851 kb on - strand at 260.854 kb on - strand at 260.855 kb on + strand at 260.855 kb on + strand at 260.856 kb on - strand at 260.856 kb on - strand at 260.863 kb on + strand at 260.868 kb on - strand at 260.886 kb on - strand at 260.930 kb on + strand, within BACOVA_01053 at 260.930 kb on + strand, within BACOVA_01053 at 260.930 kb on + strand, within BACOVA_01053 at 260.931 kb on - strand, within BACOVA_01053 at 260.933 kb on + strand, within BACOVA_01053 at 260.935 kb on + strand, within BACOVA_01053 at 260.935 kb on + strand, within BACOVA_01053 at 260.936 kb on - strand, within BACOVA_01053 at 260.936 kb on - strand, within BACOVA_01053 at 260.944 kb on + strand, within BACOVA_01053 at 260.945 kb on - strand, within BACOVA_01053 at 260.945 kb on - strand, within BACOVA_01053 at 260.978 kb on + strand, within BACOVA_01053 at 260.987 kb on - strand, within BACOVA_01053 at 261.053 kb on + strand, within BACOVA_01053 at 261.054 kb on - strand, within BACOVA_01053 at 261.054 kb on - strand, within BACOVA_01053 at 261.058 kb on + strand, within BACOVA_01053 at 261.058 kb on + strand, within BACOVA_01053 at 261.058 kb on + strand, within BACOVA_01053 at 261.058 kb on + strand, within BACOVA_01053 at 261.058 kb on + strand, within BACOVA_01053 at 261.059 kb on - strand, within BACOVA_01053 at 261.094 kb on + strand, within BACOVA_01053 at 261.094 kb on + strand, within BACOVA_01053 at 261.094 kb on + strand, within BACOVA_01053 at 261.101 kb on - strand, within BACOVA_01053 at 261.101 kb on - strand, within BACOVA_01053 at 261.107 kb on + strand, within BACOVA_01053 at 261.108 kb on - strand, within BACOVA_01053 at 261.141 kb on + strand, within BACOVA_01053 at 261.184 kb on + strand, within BACOVA_01053 at 261.226 kb on + strand, within BACOVA_01053 at 261.226 kb on + strand, within BACOVA_01053 at 261.227 kb on - strand, within BACOVA_01053 at 261.227 kb on - strand, within BACOVA_01053 at 261.227 kb on - strand, within BACOVA_01053 at 261.292 kb on + strand, within BACOVA_01053 at 261.349 kb on - strand at 261.360 kb on + strand at 261.360 kb on + strand at 261.360 kb on + strand at 261.363 kb on - strand at 261.375 kb on + strand at 261.416 kb on - strand at 261.484 kb on + strand at 261.508 kb on + strand at 261.508 kb on + strand at 261.522 kb on + strand at 261.529 kb on - strand at 261.552 kb on - strand at 261.559 kb on - strand at 261.570 kb on - strand at 261.588 kb on - strand at 261.655 kb on - strand at 261.655 kb on - strand at 261.670 kb on + strand at 261.678 kb on + strand at 261.679 kb on - strand at 261.709 kb on - strand at 261.744 kb on + strand at 261.744 kb on + strand at 261.754 kb on - strand at 261.757 kb on + strand at 261.788 kb on + strand, within BACOVA_01054 at 261.788 kb on + strand, within BACOVA_01054 at 261.791 kb on + strand, within BACOVA_01054 at 261.792 kb on - strand, within BACOVA_01054 at 261.792 kb on - strand, within BACOVA_01054 at 261.792 kb on - strand, within BACOVA_01054 at 261.792 kb on - strand, within BACOVA_01054 at 261.792 kb on - strand, within BACOVA_01054 at 261.835 kb on - strand, within BACOVA_01054 at 261.838 kb on + strand, within BACOVA_01054 at 261.857 kb on - strand, within BACOVA_01054 at 261.888 kb on + strand, within BACOVA_01054 at 261.888 kb on + strand, within BACOVA_01054 at 261.889 kb on - strand, within BACOVA_01054 at 261.899 kb on + strand, within BACOVA_01054 at 261.899 kb on + strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.923 kb on - strand, within BACOVA_01054 at 261.923 kb on - strand, within BACOVA_01054 at 261.945 kb on - strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.958 kb on - strand, within BACOVA_01054 at 261.991 kb on - strand, within BACOVA_01054 at 261.991 kb on - strand, within BACOVA_01054 at 262.034 kb on - strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.036 kb on - strand, within BACOVA_01054 at 262.085 kb on - strand, within BACOVA_01054 at 262.099 kb on + strand, within BACOVA_01054 at 262.105 kb on - strand, within BACOVA_01054 at 262.129 kb on + strand, within BACOVA_01054 at 262.134 kb on - strand, within BACOVA_01054 at 262.136 kb on + strand, within BACOVA_01054 at 262.136 kb on + strand, within BACOVA_01054 at 262.191 kb on - strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.226 kb on - strand, within BACOVA_01054 at 262.234 kb on + strand, within BACOVA_01054 at 262.235 kb on - strand, within BACOVA_01054 at 262.239 kb on - strand, within BACOVA_01054 at 262.276 kb on + strand, within BACOVA_01054 at 262.352 kb on + strand, within BACOVA_01054 at 262.388 kb on + strand, within BACOVA_01054 at 262.395 kb on + strand, within BACOVA_01054 at 262.398 kb on + strand, within BACOVA_01054 at 262.415 kb on + strand, within BACOVA_01054 at 262.450 kb on + strand, within BACOVA_01054 at 262.451 kb on - strand, within BACOVA_01054 at 262.452 kb on + strand, within BACOVA_01054 at 262.534 kb on - strand, within BACOVA_01054 at 262.537 kb on - strand, within BACOVA_01054 at 262.537 kb on - strand, within BACOVA_01054 at 262.642 kb on - strand, within BACOVA_01054 at 262.657 kb on + strand, within BACOVA_01054 at 262.658 kb on - strand, within BACOVA_01054 at 262.663 kb on - strand, within BACOVA_01054 at 262.663 kb on - strand, within BACOVA_01054 at 262.679 kb on - strand, within BACOVA_01054 at 262.703 kb on + strand, within BACOVA_01054 at 262.705 kb on + strand, within BACOVA_01054 at 262.706 kb on - strand, within BACOVA_01054 at 262.743 kb on - strand, within BACOVA_01054 at 262.779 kb on + strand at 262.779 kb on + strand at 262.779 kb on + strand at 262.780 kb on - strand at 262.806 kb on + strand at 262.818 kb on - strand at 262.819 kb on + strand at 262.820 kb on - strand at 262.820 kb on - strand at 262.822 kb on + strand at 262.823 kb on - strand at 262.823 kb on - strand at 262.838 kb on - strand at 262.848 kb on + strand at 262.866 kb on + strand at 262.867 kb on - strand at 262.869 kb on + strand at 262.870 kb on - strand at 262.870 kb on - strand at 262.886 kb on + strand at 262.914 kb on - strand at 262.938 kb on - strand at 262.993 kb on + strand at 262.993 kb on + strand at 263.015 kb on + strand at 263.097 kb on + strand, within BACOVA_01055 at 263.098 kb on - strand, within BACOVA_01055 at 263.098 kb on - strand, within BACOVA_01055 at 263.100 kb on + strand, within BACOVA_01055 at 263.101 kb on - strand, within BACOVA_01055 at 263.121 kb on + strand, within BACOVA_01055 at 263.121 kb on + strand, within BACOVA_01055 at 263.122 kb on - strand, within BACOVA_01055 at 263.122 kb on - strand, within BACOVA_01055 at 263.192 kb on + strand, within BACOVA_01055 at 263.193 kb on - strand, within BACOVA_01055 at 263.193 kb on - strand, within BACOVA_01055 at 263.197 kb on - strand, within BACOVA_01055 at 263.204 kb on + strand, within BACOVA_01055 at 263.208 kb on + strand, within BACOVA_01055 at 263.209 kb on + strand, within BACOVA_01055 at 263.232 kb on - strand, within BACOVA_01055 at 263.246 kb on - strand, within BACOVA_01055 at 263.256 kb on + strand, within BACOVA_01055 at 263.295 kb on - strand, within BACOVA_01055 at 263.322 kb on - strand, within BACOVA_01055 at 263.330 kb on - strand, within BACOVA_01055 at 263.336 kb on + strand, within BACOVA_01055 at 263.336 kb on + strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.343 kb on + strand, within BACOVA_01055 at 263.370 kb on + strand, within BACOVA_01055 at 263.371 kb on - strand, within BACOVA_01055 at 263.371 kb on - strand, within BACOVA_01055 at 263.380 kb on + strand, within BACOVA_01055 at 263.380 kb on + strand, within BACOVA_01055 at 263.381 kb on - strand, within BACOVA_01055 at 263.381 kb on - strand, within BACOVA_01055 at 263.393 kb on + strand, within BACOVA_01055 at 263.394 kb on - strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.494 kb on + strand, within BACOVA_01055 at 263.495 kb on - strand, within BACOVA_01055 at 263.625 kb on - strand, within BACOVA_01055 at 263.639 kb on - strand, within BACOVA_01055 at 263.641 kb on - strand, within BACOVA_01055 at 263.641 kb on - strand, within BACOVA_01055 at 263.645 kb on - strand, within BACOVA_01055 at 263.666 kb on + strand, within BACOVA_01055 at 263.668 kb on + strand, within BACOVA_01055 at 263.668 kb on + strand, within BACOVA_01055 at 263.748 kb on + strand, within BACOVA_01055 at 263.748 kb on + strand, within BACOVA_01055 at 263.749 kb on - strand, within BACOVA_01055 at 263.749 kb on - strand, within BACOVA_01055 at 263.758 kb on + strand, within BACOVA_01055 at 263.759 kb on - strand, within BACOVA_01055 at 263.807 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.818 kb on - strand, within BACOVA_01055 at 263.828 kb on - strand, within BACOVA_01055
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 260,782 + +0.2 260,783 - +0.1 260,806 - +0.4 260,812 + -0.7 260,812 + +0.1 260,812 + +0.9 260,813 - +1.3 260,813 - +0.6 260,823 + -0.1 260,827 + -1.3 260,850 + -0.9 260,850 + -1.1 260,851 - +0.2 260,854 - +0.7 260,855 + +0.4 260,855 + -1.5 260,856 - -0.7 260,856 - +0.2 260,863 + +0.4 260,868 - -0.7 260,886 - -0.7 260,930 + BACOVA_01053 0.14 -1.5 260,930 + BACOVA_01053 0.14 +0.2 260,930 + BACOVA_01053 0.14 +0.7 260,931 - BACOVA_01053 0.15 -1.6 260,933 + BACOVA_01053 0.15 +0.6 260,935 + BACOVA_01053 0.15 -1.0 260,935 + BACOVA_01053 0.15 +0.3 260,936 - BACOVA_01053 0.16 +1.9 260,936 - BACOVA_01053 0.16 +0.2 260,944 + BACOVA_01053 0.17 +1.5 260,945 - BACOVA_01053 0.17 -2.5 260,945 - BACOVA_01053 0.17 +0.6 260,978 + BACOVA_01053 0.24 +0.3 260,987 - BACOVA_01053 0.25 -0.3 261,053 + BACOVA_01053 0.38 +0.7 261,054 - BACOVA_01053 0.38 -0.0 261,054 - BACOVA_01053 0.38 +0.2 261,058 + BACOVA_01053 0.39 -0.9 261,058 + BACOVA_01053 0.39 +0.1 261,058 + BACOVA_01053 0.39 +0.7 261,058 + BACOVA_01053 0.39 -1.5 261,058 + BACOVA_01053 0.39 -1.0 261,059 - BACOVA_01053 0.39 -0.2 261,094 + BACOVA_01053 0.46 +1.0 261,094 + BACOVA_01053 0.46 +0.0 261,094 + BACOVA_01053 0.46 -1.3 261,101 - BACOVA_01053 0.47 +1.4 261,101 - BACOVA_01053 0.47 +0.1 261,107 + BACOVA_01053 0.49 -0.7 261,108 - BACOVA_01053 0.49 -0.8 261,141 + BACOVA_01053 0.55 -0.2 261,184 + BACOVA_01053 0.64 +0.4 261,226 + BACOVA_01053 0.72 -0.6 261,226 + BACOVA_01053 0.72 +0.3 261,227 - BACOVA_01053 0.72 +0.4 261,227 - BACOVA_01053 0.72 -2.2 261,227 - BACOVA_01053 0.72 +1.0 261,292 + BACOVA_01053 0.84 +0.1 261,349 - -0.3 261,360 + -0.9 261,360 + -1.0 261,360 + +0.3 261,363 - +0.8 261,375 + +0.0 261,416 - +0.1 261,484 + -0.9 261,508 + -0.5 261,508 + -0.6 261,522 + -0.7 261,529 - +0.3 261,552 - -0.3 261,559 - -1.2 261,570 - -0.3 261,588 - +0.6 261,655 - -0.0 261,655 - +0.3 261,670 + +0.0 261,678 + +1.7 261,679 - +1.7 261,709 - +0.5 261,744 + -0.9 261,744 + -0.2 261,754 - +0.4 261,757 + +0.1 261,788 + BACOVA_01054 0.10 -0.5 261,788 + BACOVA_01054 0.10 -2.1 261,791 + BACOVA_01054 0.11 -0.5 261,792 - BACOVA_01054 0.11 -0.0 261,792 - BACOVA_01054 0.11 +0.4 261,792 - BACOVA_01054 0.11 +0.6 261,792 - BACOVA_01054 0.11 +0.6 261,792 - BACOVA_01054 0.11 +0.5 261,835 - BACOVA_01054 0.14 -0.5 261,838 + BACOVA_01054 0.15 +0.7 261,857 - BACOVA_01054 0.16 -1.5 261,888 + BACOVA_01054 0.19 -0.3 261,888 + BACOVA_01054 0.19 -0.3 261,889 - BACOVA_01054 0.19 -0.7 261,899 + BACOVA_01054 0.20 +0.1 261,899 + BACOVA_01054 0.20 -1.3 261,900 - BACOVA_01054 0.20 +0.1 261,900 - BACOVA_01054 0.20 -0.1 261,900 - BACOVA_01054 0.20 -0.0 261,923 - BACOVA_01054 0.22 +0.3 261,923 - BACOVA_01054 0.22 +0.7 261,945 - BACOVA_01054 0.23 +1.3 261,957 + BACOVA_01054 0.24 +0.2 261,957 + BACOVA_01054 0.24 +0.4 261,957 + BACOVA_01054 0.24 -0.2 261,958 - BACOVA_01054 0.24 +0.7 261,991 - BACOVA_01054 0.27 -0.2 261,991 - BACOVA_01054 0.27 +0.5 262,034 - BACOVA_01054 0.31 -0.5 262,035 + BACOVA_01054 0.31 -1.3 262,035 + BACOVA_01054 0.31 +1.1 262,035 + BACOVA_01054 0.31 -0.2 262,035 + BACOVA_01054 0.31 -1.9 262,036 - BACOVA_01054 0.31 -0.2 262,085 - BACOVA_01054 0.35 -0.2 262,099 + BACOVA_01054 0.36 +0.7 262,105 - BACOVA_01054 0.37 -0.3 262,129 + BACOVA_01054 0.39 +1.2 262,134 - BACOVA_01054 0.39 -0.8 262,136 + BACOVA_01054 0.39 +0.3 262,136 + BACOVA_01054 0.39 -0.4 262,191 - BACOVA_01054 0.44 -2.9 262,225 + BACOVA_01054 0.46 -1.6 262,225 + BACOVA_01054 0.46 -0.5 262,225 + BACOVA_01054 0.46 -0.9 262,225 + BACOVA_01054 0.46 -1.0 262,226 - BACOVA_01054 0.47 -0.6 262,234 + BACOVA_01054 0.47 +0.1 262,235 - BACOVA_01054 0.47 -3.4 262,239 - BACOVA_01054 0.48 -0.7 262,276 + BACOVA_01054 0.51 -0.2 262,352 + BACOVA_01054 0.57 -0.1 262,388 + BACOVA_01054 0.60 -0.5 262,395 + BACOVA_01054 0.60 -0.5 262,398 + BACOVA_01054 0.61 -2.8 262,415 + BACOVA_01054 0.62 -0.7 262,450 + BACOVA_01054 0.65 -0.9 262,451 - BACOVA_01054 0.65 +0.3 262,452 + BACOVA_01054 0.65 -1.0 262,534 - BACOVA_01054 0.72 -0.3 262,537 - BACOVA_01054 0.72 -1.0 262,537 - BACOVA_01054 0.72 -0.5 262,642 - BACOVA_01054 0.81 -0.5 262,657 + BACOVA_01054 0.82 +0.8 262,658 - BACOVA_01054 0.82 -0.4 262,663 - BACOVA_01054 0.83 -0.7 262,663 - BACOVA_01054 0.83 -0.0 262,679 - BACOVA_01054 0.84 -1.0 262,703 + BACOVA_01054 0.86 +0.0 262,705 + BACOVA_01054 0.86 -0.4 262,706 - BACOVA_01054 0.86 -0.0 262,743 - BACOVA_01054 0.89 +0.6 262,779 + -0.2 262,779 + +1.0 262,779 + -0.9 262,780 - +0.4 262,806 + +0.4 262,818 - -0.3 262,819 + -0.2 262,820 - +0.4 262,820 - -0.7 262,822 + +0.2 262,823 - +0.8 262,823 - +1.1 262,838 - -0.2 262,848 + -0.5 262,866 + -0.4 262,867 - -0.1 262,869 + -0.2 262,870 - +0.0 262,870 - +0.1 262,886 + -1.3 262,914 - -2.2 262,938 - -0.5 262,993 + -0.2 262,993 + +0.4 263,015 + -0.1 263,097 + BACOVA_01055 0.14 +1.3 263,098 - BACOVA_01055 0.14 -1.0 263,098 - BACOVA_01055 0.14 -0.3 263,100 + BACOVA_01055 0.14 -1.3 263,101 - BACOVA_01055 0.14 -0.5 263,121 + BACOVA_01055 0.15 -0.6 263,121 + BACOVA_01055 0.15 -1.4 263,122 - BACOVA_01055 0.15 +0.3 263,122 - BACOVA_01055 0.15 -0.4 263,192 + BACOVA_01055 0.20 +1.3 263,193 - BACOVA_01055 0.20 +0.8 263,193 - BACOVA_01055 0.20 +1.0 263,197 - BACOVA_01055 0.20 +0.1 263,204 + BACOVA_01055 0.20 +0.8 263,208 + BACOVA_01055 0.21 -0.5 263,209 + BACOVA_01055 0.21 -1.0 263,232 - BACOVA_01055 0.22 +0.4 263,246 - BACOVA_01055 0.23 +0.9 263,256 + BACOVA_01055 0.24 -0.8 263,295 - BACOVA_01055 0.26 -0.3 263,322 - BACOVA_01055 0.28 +0.7 263,330 - BACOVA_01055 0.28 -0.2 263,336 + BACOVA_01055 0.29 -0.3 263,336 + BACOVA_01055 0.29 +0.0 263,337 - BACOVA_01055 0.29 +0.1 263,337 - BACOVA_01055 0.29 -0.3 263,337 - BACOVA_01055 0.29 -0.5 263,343 + BACOVA_01055 0.29 +0.3 263,370 + BACOVA_01055 0.31 +0.1 263,371 - BACOVA_01055 0.31 +0.1 263,371 - BACOVA_01055 0.31 -0.4 263,380 + BACOVA_01055 0.31 -1.5 263,380 + BACOVA_01055 0.31 +1.0 263,381 - BACOVA_01055 0.31 -0.2 263,381 - BACOVA_01055 0.31 +0.7 263,393 + BACOVA_01055 0.32 +1.0 263,394 - BACOVA_01055 0.32 -0.7 263,414 + BACOVA_01055 0.33 -0.6 263,414 + BACOVA_01055 0.33 -0.0 263,414 + BACOVA_01055 0.33 +0.4 263,414 + BACOVA_01055 0.33 +0.2 263,494 + BACOVA_01055 0.38 -0.6 263,495 - BACOVA_01055 0.38 +0.3 263,625 - BACOVA_01055 0.46 +0.5 263,639 - BACOVA_01055 0.47 +2.0 263,641 - BACOVA_01055 0.47 +0.5 263,641 - BACOVA_01055 0.47 +0.7 263,645 - BACOVA_01055 0.47 -0.3 263,666 + BACOVA_01055 0.49 -0.4 263,668 + BACOVA_01055 0.49 +0.5 263,668 + BACOVA_01055 0.49 +1.0 263,748 + BACOVA_01055 0.54 +0.2 263,748 + BACOVA_01055 0.54 +1.0 263,749 - BACOVA_01055 0.54 +0.7 263,749 - BACOVA_01055 0.54 +0.0 263,758 + BACOVA_01055 0.54 +1.1 263,759 - BACOVA_01055 0.54 +0.9 263,807 + BACOVA_01055 0.57 -0.4 263,817 + BACOVA_01055 0.58 +0.0 263,817 + BACOVA_01055 0.58 +1.1 263,817 + BACOVA_01055 0.58 -0.0 263,818 - BACOVA_01055 0.58 +0.7 263,828 - BACOVA_01055 0.59 -1.2
Or see this region's nucleotide sequence