Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00912

Experiment: Pectin from apple; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00910 and BACOVA_00911 are separated by 6 nucleotidesBACOVA_00911 and BACOVA_00912 are separated by 105 nucleotidesBACOVA_00912 and BACOVA_00913 are separated by 85 nucleotides BACOVA_00910: BACOVA_00910 - sugar isomerase, KpsF/GutQ family, at 44,118 to 44,723 _00910 BACOVA_00911: BACOVA_00911 - TIGR00730 family protein, at 44,730 to 45,263 _00911 BACOVA_00912: BACOVA_00912 - peptidase M16 inactive domain protein, at 45,369 to 46,589 _00912 BACOVA_00913: BACOVA_00913 - hypothetical protein, at 46,675 to 48,243 _00913 Position (kb) 45 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 44.737 kb on - strandat 44.758 kb on - strandat 44.758 kb on - strandat 44.780 kb on - strandat 44.839 kb on - strand, within BACOVA_00911at 44.839 kb on - strand, within BACOVA_00911at 44.858 kb on - strand, within BACOVA_00911at 44.867 kb on - strand, within BACOVA_00911at 44.914 kb on - strand, within BACOVA_00911at 44.914 kb on - strand, within BACOVA_00911at 44.937 kb on - strand, within BACOVA_00911at 45.031 kb on - strand, within BACOVA_00911at 45.031 kb on - strand, within BACOVA_00911at 45.043 kb on - strand, within BACOVA_00911at 45.152 kb on - strand, within BACOVA_00911at 45.190 kb on - strand, within BACOVA_00911at 45.212 kb on - strandat 45.253 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.280 kb on - strandat 45.326 kb on - strandat 45.344 kb on + strandat 45.344 kb on + strandat 45.352 kb on + strandat 45.353 kb on - strandat 45.377 kb on + strandat 45.386 kb on + strandat 45.386 kb on + strandat 45.387 kb on - strandat 45.407 kb on + strandat 45.441 kb on + strandat 45.441 kb on + strandat 45.442 kb on - strandat 45.442 kb on - strandat 45.527 kb on + strand, within BACOVA_00912at 45.557 kb on + strand, within BACOVA_00912at 45.580 kb on + strand, within BACOVA_00912at 45.580 kb on + strand, within BACOVA_00912at 45.600 kb on + strand, within BACOVA_00912at 45.601 kb on - strand, within BACOVA_00912at 45.608 kb on + strand, within BACOVA_00912at 45.645 kb on + strand, within BACOVA_00912at 45.681 kb on - strand, within BACOVA_00912at 45.686 kb on - strand, within BACOVA_00912at 45.686 kb on - strand, within BACOVA_00912at 45.686 kb on - strand, within BACOVA_00912at 45.715 kb on + strand, within BACOVA_00912at 45.716 kb on - strand, within BACOVA_00912at 45.756 kb on + strand, within BACOVA_00912at 45.757 kb on - strand, within BACOVA_00912at 45.757 kb on - strand, within BACOVA_00912at 45.782 kb on - strand, within BACOVA_00912at 45.883 kb on + strand, within BACOVA_00912at 45.884 kb on - strand, within BACOVA_00912at 45.903 kb on + strand, within BACOVA_00912at 45.904 kb on - strand, within BACOVA_00912at 45.917 kb on + strand, within BACOVA_00912at 45.979 kb on - strand, within BACOVA_00912at 45.989 kb on + strand, within BACOVA_00912at 46.006 kb on + strand, within BACOVA_00912at 46.035 kb on + strand, within BACOVA_00912at 46.106 kb on + strand, within BACOVA_00912at 46.127 kb on + strand, within BACOVA_00912at 46.137 kb on + strand, within BACOVA_00912at 46.137 kb on + strand, within BACOVA_00912at 46.138 kb on - strand, within BACOVA_00912at 46.178 kb on + strand, within BACOVA_00912at 46.178 kb on + strand, within BACOVA_00912at 46.218 kb on + strand, within BACOVA_00912at 46.221 kb on - strand, within BACOVA_00912at 46.246 kb on - strand, within BACOVA_00912at 46.268 kb on + strand, within BACOVA_00912at 46.322 kb on + strand, within BACOVA_00912at 46.346 kb on + strand, within BACOVA_00912at 46.430 kb on + strand, within BACOVA_00912at 46.469 kb on + strandat 46.470 kb on - strandat 46.470 kb on - strandat 46.473 kb on + strandat 46.503 kb on - strandat 46.504 kb on + strandat 46.504 kb on + strandat 46.514 kb on - strandat 46.514 kb on - strandat 46.514 kb on - strandat 46.567 kb on + strandat 46.572 kb on - strandat 46.572 kb on - strandat 46.625 kb on + strandat 46.640 kb on + strandat 46.640 kb on + strandat 46.640 kb on + strandat 46.641 kb on - strandat 46.641 kb on - strandat 46.641 kb on - strandat 46.644 kb on + strandat 46.645 kb on - strandat 46.652 kb on - strandat 46.660 kb on - strandat 46.660 kb on - strandat 46.663 kb on - strandat 46.674 kb on + strandat 46.674 kb on + strandat 46.674 kb on + strandat 46.675 kb on - strandat 46.726 kb on - strandat 46.742 kb on - strandat 46.747 kb on + strandat 46.747 kb on + strandat 46.747 kb on + strandat 46.748 kb on - strandat 46.751 kb on + strandat 46.752 kb on - strandat 46.755 kb on + strandat 46.755 kb on + strandat 46.755 kb on + strandat 46.756 kb on - strandat 46.756 kb on - strandat 46.756 kb on - strandat 46.907 kb on + strand, within BACOVA_00913at 46.963 kb on + strand, within BACOVA_00913at 46.963 kb on + strand, within BACOVA_00913at 46.963 kb on + strand, within BACOVA_00913at 46.989 kb on + strand, within BACOVA_00913at 46.994 kb on + strand, within BACOVA_00913at 46.995 kb on - strand, within BACOVA_00913at 47.023 kb on - strand, within BACOVA_00913at 47.024 kb on + strand, within BACOVA_00913at 47.024 kb on + strand, within BACOVA_00913at 47.025 kb on - strand, within BACOVA_00913at 47.026 kb on + strand, within BACOVA_00913at 47.026 kb on + strand, within BACOVA_00913at 47.026 kb on + strand, within BACOVA_00913at 47.026 kb on + strand, within BACOVA_00913at 47.027 kb on - strand, within BACOVA_00913at 47.027 kb on - strand, within BACOVA_00913at 47.027 kb on - strand, within BACOVA_00913at 47.132 kb on - strand, within BACOVA_00913at 47.132 kb on - strand, within BACOVA_00913at 47.136 kb on + strand, within BACOVA_00913at 47.136 kb on + strand, within BACOVA_00913at 47.136 kb on + strand, within BACOVA_00913at 47.137 kb on - strand, within BACOVA_00913at 47.145 kb on - strand, within BACOVA_00913at 47.148 kb on - strand, within BACOVA_00913at 47.148 kb on - strand, within BACOVA_00913at 47.279 kb on + strand, within BACOVA_00913at 47.279 kb on + strand, within BACOVA_00913at 47.279 kb on + strand, within BACOVA_00913at 47.337 kb on + strand, within BACOVA_00913at 47.415 kb on + strand, within BACOVA_00913at 47.416 kb on - strand, within BACOVA_00913at 47.456 kb on - strand, within BACOVA_00913at 47.456 kb on - strand, within BACOVA_00913at 47.479 kb on - strand, within BACOVA_00913at 47.545 kb on + strand, within BACOVA_00913at 47.545 kb on + strand, within BACOVA_00913

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C)
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44,737 - -0.1
44,758 - -0.3
44,758 - +0.9
44,780 - -0.3
44,839 - BACOVA_00911 0.20 -0.7
44,839 - BACOVA_00911 0.20 -0.6
44,858 - BACOVA_00911 0.24 +0.6
44,867 - BACOVA_00911 0.26 -1.0
44,914 - BACOVA_00911 0.34 +0.6
44,914 - BACOVA_00911 0.34 -2.1
44,937 - BACOVA_00911 0.39 -1.1
45,031 - BACOVA_00911 0.56 +2.3
45,031 - BACOVA_00911 0.56 -0.3
45,043 - BACOVA_00911 0.59 -1.0
45,152 - BACOVA_00911 0.79 -0.4
45,190 - BACOVA_00911 0.86 +0.3
45,212 - -1.0
45,253 - -1.0
45,266 - -0.3
45,266 - +1.3
45,280 - +0.0
45,326 - -0.7
45,344 + -1.2
45,344 + -2.0
45,352 + +0.8
45,353 - -1.3
45,377 + -1.0
45,386 + -2.1
45,386 + -0.7
45,387 - +0.3
45,407 + -1.5
45,441 + +1.3
45,441 + -0.5
45,442 - -0.0
45,442 - -1.5
45,527 + BACOVA_00912 0.13 -0.6
45,557 + BACOVA_00912 0.15 -1.0
45,580 + BACOVA_00912 0.17 +0.2
45,580 + BACOVA_00912 0.17 -1.2
45,600 + BACOVA_00912 0.19 -0.8
45,601 - BACOVA_00912 0.19 -1.1
45,608 + BACOVA_00912 0.20 -1.3
45,645 + BACOVA_00912 0.23 -0.5
45,681 - BACOVA_00912 0.26 +0.3
45,686 - BACOVA_00912 0.26 -1.6
45,686 - BACOVA_00912 0.26 +0.1
45,686 - BACOVA_00912 0.26 -1.5
45,715 + BACOVA_00912 0.28 -0.4
45,716 - BACOVA_00912 0.28 +0.4
45,756 + BACOVA_00912 0.32 +0.5
45,757 - BACOVA_00912 0.32 +0.0
45,757 - BACOVA_00912 0.32 -0.7
45,782 - BACOVA_00912 0.34 +0.6
45,883 + BACOVA_00912 0.42 +0.0
45,884 - BACOVA_00912 0.42 +0.6
45,903 + BACOVA_00912 0.44 -0.3
45,904 - BACOVA_00912 0.44 -1.1
45,917 + BACOVA_00912 0.45 +0.9
45,979 - BACOVA_00912 0.50 +0.6
45,989 + BACOVA_00912 0.51 -1.3
46,006 + BACOVA_00912 0.52 -0.8
46,035 + BACOVA_00912 0.55 -0.3
46,106 + BACOVA_00912 0.60 +0.5
46,127 + BACOVA_00912 0.62 -0.3
46,137 + BACOVA_00912 0.63 +1.0
46,137 + BACOVA_00912 0.63 +0.2
46,138 - BACOVA_00912 0.63 +1.2
46,178 + BACOVA_00912 0.66 -0.0
46,178 + BACOVA_00912 0.66 -0.4
46,218 + BACOVA_00912 0.70 -0.7
46,221 - BACOVA_00912 0.70 -0.7
46,246 - BACOVA_00912 0.72 -0.5
46,268 + BACOVA_00912 0.74 -0.7
46,322 + BACOVA_00912 0.78 -0.6
46,346 + BACOVA_00912 0.80 +0.6
46,430 + BACOVA_00912 0.87 -0.3
46,469 + -1.3
46,470 - -0.5
46,470 - -0.5
46,473 + -0.0
46,503 - -0.3
46,504 + -0.8
46,504 + +0.5
46,514 - +0.2
46,514 - +1.2
46,514 - +0.2
46,567 + -1.8
46,572 - -0.3
46,572 - -0.3
46,625 + +1.3
46,640 + +0.3
46,640 + +0.6
46,640 + -2.3
46,641 - +0.2
46,641 - +0.2
46,641 - -1.6
46,644 + +0.8
46,645 - +2.3
46,652 - +0.3
46,660 - -0.1
46,660 - +1.3
46,663 - -0.8
46,674 + +0.7
46,674 + -2.9
46,674 + -0.2
46,675 - +0.2
46,726 - -0.6
46,742 - -2.0
46,747 + -0.7
46,747 + -1.1
46,747 + +1.2
46,748 - -1.1
46,751 + -0.2
46,752 - +1.7
46,755 + +0.9
46,755 + -0.8
46,755 + +0.8
46,756 - -0.9
46,756 - -0.7
46,756 - -0.1
46,907 + BACOVA_00913 0.15 -0.3
46,963 + BACOVA_00913 0.18 +1.2
46,963 + BACOVA_00913 0.18 -1.3
46,963 + BACOVA_00913 0.18 +1.7
46,989 + BACOVA_00913 0.20 -0.8
46,994 + BACOVA_00913 0.20 -1.5
46,995 - BACOVA_00913 0.20 +0.2
47,023 - BACOVA_00913 0.22 +0.1
47,024 + BACOVA_00913 0.22 -0.3
47,024 + BACOVA_00913 0.22 +0.3
47,025 - BACOVA_00913 0.22 +0.8
47,026 + BACOVA_00913 0.22 +0.1
47,026 + BACOVA_00913 0.22 -1.1
47,026 + BACOVA_00913 0.22 -0.9
47,026 + BACOVA_00913 0.22 +0.6
47,027 - BACOVA_00913 0.22 -0.7
47,027 - BACOVA_00913 0.22 +2.1
47,027 - BACOVA_00913 0.22 -0.2
47,132 - BACOVA_00913 0.29 +0.1
47,132 - BACOVA_00913 0.29 +0.6
47,136 + BACOVA_00913 0.29 -0.7
47,136 + BACOVA_00913 0.29 -0.2
47,136 + BACOVA_00913 0.29 +0.7
47,137 - BACOVA_00913 0.29 -0.3
47,145 - BACOVA_00913 0.30 -0.0
47,148 - BACOVA_00913 0.30 -0.9
47,148 - BACOVA_00913 0.30 -0.4
47,279 + BACOVA_00913 0.38 +0.0
47,279 + BACOVA_00913 0.38 -1.3
47,279 + BACOVA_00913 0.38 -1.0
47,337 + BACOVA_00913 0.42 +0.6
47,415 + BACOVA_00913 0.47 +0.4
47,416 - BACOVA_00913 0.47 +0.0
47,456 - BACOVA_00913 0.50 +1.2
47,456 - BACOVA_00913 0.50 -1.1
47,479 - BACOVA_00913 0.51 -0.8
47,545 + BACOVA_00913 0.55 +0.3
47,545 + BACOVA_00913 0.55 -1.5

Or see this region's nucleotide sequence