Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00843 and BACOVA_00844 overlap by 13 nucleotides BACOVA_00844 and BACOVA_00845 overlap by 20 nucleotides BACOVA_00845 and BACOVA_00846 are separated by 269 nucleotides BACOVA_00846 and BACOVA_00847 are separated by 531 nucleotides
BACOVA_00843: BACOVA_00843 - hypothetical protein, at 100,433 to 102,145
_00843
BACOVA_00844: BACOVA_00844 - hypothetical protein, at 102,133 to 102,246
_00844
BACOVA_00845: BACOVA_00845 - putative DNA-binding protein, at 102,227 to 102,844
_00845
BACOVA_00846: BACOVA_00846 - hypothetical protein, at 103,114 to 105,360
_00846
BACOVA_00847: BACOVA_00847 - putative ribosome small subunit-dependent GTPase A, at 105,892 to 106,980
_00847
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 102.134 kb on + strand at 102.136 kb on + strand at 102.136 kb on + strand at 102.136 kb on + strand at 102.136 kb on + strand at 102.137 kb on - strand at 102.137 kb on - strand at 102.137 kb on - strand at 102.151 kb on + strand, within BACOVA_00844 at 102.152 kb on - strand, within BACOVA_00844 at 102.163 kb on + strand, within BACOVA_00844 at 102.225 kb on + strand, within BACOVA_00844 at 102.225 kb on + strand, within BACOVA_00844 at 102.226 kb on - strand, within BACOVA_00844 at 102.228 kb on + strand at 102.228 kb on + strand at 102.228 kb on + strand at 102.229 kb on - strand at 102.229 kb on - strand at 102.229 kb on - strand at 102.247 kb on - strand at 102.302 kb on - strand, within BACOVA_00845 at 102.346 kb on + strand, within BACOVA_00845 at 102.347 kb on - strand, within BACOVA_00845 at 102.349 kb on + strand, within BACOVA_00845 at 102.352 kb on - strand, within BACOVA_00845 at 102.352 kb on - strand, within BACOVA_00845 at 102.352 kb on - strand, within BACOVA_00845 at 102.368 kb on - strand, within BACOVA_00845 at 102.395 kb on + strand, within BACOVA_00845 at 102.473 kb on + strand, within BACOVA_00845 at 102.474 kb on - strand, within BACOVA_00845 at 102.570 kb on - strand, within BACOVA_00845 at 102.581 kb on - strand, within BACOVA_00845 at 102.598 kb on + strand, within BACOVA_00845 at 102.629 kb on - strand, within BACOVA_00845 at 102.665 kb on + strand, within BACOVA_00845 at 102.666 kb on - strand, within BACOVA_00845 at 102.696 kb on + strand, within BACOVA_00845 at 102.823 kb on - strand at 102.823 kb on - strand at 102.844 kb on + strand at 102.845 kb on - strand at 102.845 kb on - strand at 102.849 kb on - strand at 102.850 kb on + strand at 102.851 kb on - strand at 102.861 kb on + strand at 102.861 kb on + strand at 102.862 kb on - strand at 102.874 kb on + strand at 102.875 kb on - strand at 102.875 kb on - strand at 102.887 kb on - strand at 102.893 kb on - strand at 102.896 kb on + strand at 103.033 kb on - strand at 103.033 kb on - strand at 103.045 kb on - strand at 103.054 kb on + strand at 103.060 kb on + strand at 103.130 kb on - strand at 103.134 kb on + strand at 103.135 kb on - strand at 103.170 kb on + strand at 103.171 kb on - strand at 103.171 kb on - strand at 103.172 kb on + strand at 103.172 kb on + strand at 103.172 kb on + strand at 103.172 kb on + strand at 103.173 kb on - strand at 103.174 kb on + strand at 103.174 kb on + strand at 103.175 kb on - strand at 103.175 kb on - strand at 103.194 kb on + strand at 103.235 kb on - strand at 103.278 kb on - strand at 103.297 kb on - strand at 103.407 kb on + strand, within BACOVA_00846 at 103.408 kb on - strand, within BACOVA_00846 at 103.411 kb on + strand, within BACOVA_00846 at 103.412 kb on - strand, within BACOVA_00846 at 103.440 kb on - strand, within BACOVA_00846 at 103.444 kb on + strand, within BACOVA_00846 at 103.444 kb on + strand, within BACOVA_00846 at 103.445 kb on - strand, within BACOVA_00846 at 103.475 kb on + strand, within BACOVA_00846 at 103.506 kb on + strand, within BACOVA_00846 at 103.516 kb on - strand, within BACOVA_00846 at 103.527 kb on + strand, within BACOVA_00846 at 103.530 kb on - strand, within BACOVA_00846 at 103.553 kb on + strand, within BACOVA_00846 at 103.554 kb on - strand, within BACOVA_00846 at 103.596 kb on + strand, within BACOVA_00846 at 103.609 kb on - strand, within BACOVA_00846 at 103.659 kb on - strand, within BACOVA_00846 at 103.767 kb on + strand, within BACOVA_00846 at 103.767 kb on + strand, within BACOVA_00846 at 103.767 kb on + strand, within BACOVA_00846 at 103.881 kb on + strand, within BACOVA_00846 at 103.882 kb on - strand, within BACOVA_00846 at 103.890 kb on + strand, within BACOVA_00846 at 103.891 kb on - strand, within BACOVA_00846 at 103.892 kb on + strand, within BACOVA_00846 at 103.896 kb on + strand, within BACOVA_00846 at 103.896 kb on + strand, within BACOVA_00846 at 103.897 kb on - strand, within BACOVA_00846 at 104.003 kb on + strand, within BACOVA_00846 at 104.004 kb on - strand, within BACOVA_00846 at 104.004 kb on - strand, within BACOVA_00846 at 104.004 kb on - strand, within BACOVA_00846 at 104.018 kb on + strand, within BACOVA_00846 at 104.019 kb on - strand, within BACOVA_00846 at 104.029 kb on + strand, within BACOVA_00846 at 104.029 kb on + strand, within BACOVA_00846 at 104.071 kb on - strand, within BACOVA_00846 at 104.088 kb on - strand, within BACOVA_00846 at 104.099 kb on + strand, within BACOVA_00846 at 104.103 kb on + strand, within BACOVA_00846 at 104.112 kb on + strand, within BACOVA_00846 at 104.117 kb on - strand, within BACOVA_00846 at 104.151 kb on + strand, within BACOVA_00846 at 104.200 kb on + strand, within BACOVA_00846 at 104.233 kb on + strand, within BACOVA_00846 at 104.302 kb on - strand, within BACOVA_00846 at 104.303 kb on + strand, within BACOVA_00846 at 104.303 kb on + strand, within BACOVA_00846 at 104.320 kb on + strand, within BACOVA_00846 at 104.320 kb on + strand, within BACOVA_00846 at 104.320 kb on + strand, within BACOVA_00846 at 104.320 kb on + strand, within BACOVA_00846 at 104.321 kb on - strand, within BACOVA_00846 at 104.321 kb on - strand, within BACOVA_00846 at 104.321 kb on - strand, within BACOVA_00846 at 104.321 kb on - strand, within BACOVA_00846 at 104.322 kb on + strand, within BACOVA_00846 at 104.322 kb on + strand, within BACOVA_00846 at 104.366 kb on + strand, within BACOVA_00846 at 104.390 kb on - strand, within BACOVA_00846 at 104.394 kb on + strand, within BACOVA_00846 at 104.394 kb on + strand, within BACOVA_00846 at 104.398 kb on + strand, within BACOVA_00846 at 104.500 kb on - strand, within BACOVA_00846 at 104.500 kb on - strand, within BACOVA_00846 at 104.501 kb on + strand, within BACOVA_00846 at 104.566 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.569 kb on - strand, within BACOVA_00846 at 104.569 kb on - strand, within BACOVA_00846 at 104.569 kb on - strand, within BACOVA_00846 at 104.569 kb on - strand, within BACOVA_00846 at 104.601 kb on + strand, within BACOVA_00846 at 104.601 kb on + strand, within BACOVA_00846 at 104.602 kb on - strand, within BACOVA_00846 at 104.602 kb on - strand, within BACOVA_00846 at 104.608 kb on - strand, within BACOVA_00846 at 104.608 kb on - strand, within BACOVA_00846 at 104.642 kb on + strand, within BACOVA_00846 at 104.659 kb on + strand, within BACOVA_00846 at 104.659 kb on + strand, within BACOVA_00846 at 104.659 kb on + strand, within BACOVA_00846 at 104.662 kb on - strand, within BACOVA_00846 at 104.662 kb on - strand, within BACOVA_00846 at 104.721 kb on + strand, within BACOVA_00846 at 104.721 kb on + strand, within BACOVA_00846 at 104.722 kb on - strand, within BACOVA_00846 at 104.722 kb on - strand, within BACOVA_00846 at 104.722 kb on - strand, within BACOVA_00846 at 104.722 kb on - strand, within BACOVA_00846 at 104.791 kb on + strand, within BACOVA_00846 at 104.791 kb on + strand, within BACOVA_00846 at 104.830 kb on - strand, within BACOVA_00846 at 104.902 kb on - strand, within BACOVA_00846 at 104.919 kb on - strand, within BACOVA_00846 at 104.925 kb on + strand, within BACOVA_00846 at 104.970 kb on - strand, within BACOVA_00846 at 104.970 kb on - strand, within BACOVA_00846 at 104.970 kb on - strand, within BACOVA_00846 at 105.017 kb on - strand, within BACOVA_00846 at 105.060 kb on + strand, within BACOVA_00846 at 105.094 kb on + strand, within BACOVA_00846 at 105.094 kb on + strand, within BACOVA_00846 at 105.094 kb on + strand, within BACOVA_00846 at 105.094 kb on + strand, within BACOVA_00846 at 105.095 kb on - strand, within BACOVA_00846 at 105.095 kb on - strand, within BACOVA_00846 at 105.095 kb on - strand, within BACOVA_00846 at 105.225 kb on + strand at 105.225 kb on + strand at 105.225 kb on + strand at 105.225 kb on + strand at 105.226 kb on - strand at 105.226 kb on - strand at 105.226 kb on - strand at 105.226 kb on - strand at 105.250 kb on + strand at 105.264 kb on + strand at 105.314 kb on + strand at 105.447 kb on - strand at 105.553 kb on + strand at 105.559 kb on + strand at 105.560 kb on - strand at 105.561 kb on + strand at 105.561 kb on + strand at 105.561 kb on + strand at 105.562 kb on - strand at 105.618 kb on + strand at 105.626 kb on - strand at 105.663 kb on + strand at 105.663 kb on + strand at 105.664 kb on - strand at 105.664 kb on - strand at 105.673 kb on + strand at 105.697 kb on - strand at 105.722 kb on - strand at 105.732 kb on - strand at 105.746 kb on + strand at 105.747 kb on - strand at 105.747 kb on - strand at 105.755 kb on - strand at 105.795 kb on + strand at 105.795 kb on + strand at 105.869 kb on - strand at 105.882 kb on + strand at 105.906 kb on + strand at 105.916 kb on + strand at 105.925 kb on + strand at 106.026 kb on + strand, within BACOVA_00847 at 106.026 kb on + strand, within BACOVA_00847 at 106.028 kb on + strand, within BACOVA_00847 at 106.136 kb on - strand, within BACOVA_00847 at 106.201 kb on + strand, within BACOVA_00847 at 106.249 kb on - strand, within BACOVA_00847 at 106.249 kb on - strand, within BACOVA_00847 at 106.277 kb on - strand, within BACOVA_00847 at 106.277 kb on - strand, within BACOVA_00847 at 106.277 kb on - strand, within BACOVA_00847 at 106.277 kb on - strand, within BACOVA_00847 at 106.298 kb on + strand, within BACOVA_00847 at 106.319 kb on - strand, within BACOVA_00847
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 102,134 + -0.7 102,136 + -0.0 102,136 + +0.1 102,136 + +0.6 102,136 + -0.7 102,137 - +0.7 102,137 - +0.3 102,137 - -0.1 102,151 + BACOVA_00844 0.16 -0.9 102,152 - BACOVA_00844 0.17 +0.1 102,163 + BACOVA_00844 0.26 -0.7 102,225 + BACOVA_00844 0.81 -0.3 102,225 + BACOVA_00844 0.81 -0.0 102,226 - BACOVA_00844 0.82 -1.5 102,228 + +0.0 102,228 + -1.3 102,228 + -0.2 102,229 - +0.1 102,229 - -0.0 102,229 - +0.1 102,247 - -0.5 102,302 - BACOVA_00845 0.12 -0.7 102,346 + BACOVA_00845 0.19 -0.3 102,347 - BACOVA_00845 0.19 +0.6 102,349 + BACOVA_00845 0.20 -1.7 102,352 - BACOVA_00845 0.20 +1.4 102,352 - BACOVA_00845 0.20 -0.7 102,352 - BACOVA_00845 0.20 -0.1 102,368 - BACOVA_00845 0.23 -1.2 102,395 + BACOVA_00845 0.27 +0.8 102,473 + BACOVA_00845 0.40 -0.4 102,474 - BACOVA_00845 0.40 +0.7 102,570 - BACOVA_00845 0.56 +0.4 102,581 - BACOVA_00845 0.57 +1.0 102,598 + BACOVA_00845 0.60 +0.4 102,629 - BACOVA_00845 0.65 -2.0 102,665 + BACOVA_00845 0.71 -0.8 102,666 - BACOVA_00845 0.71 +0.9 102,696 + BACOVA_00845 0.76 +0.5 102,823 - -0.3 102,823 - -0.9 102,844 + +1.0 102,845 - -1.7 102,845 - +1.3 102,849 - +0.6 102,850 + +3.5 102,851 - +0.6 102,861 + -1.0 102,861 + -0.4 102,862 - -0.6 102,874 + +1.3 102,875 - +0.3 102,875 - +1.6 102,887 - +0.2 102,893 - +2.5 102,896 + -1.2 103,033 - -0.2 103,033 - +0.1 103,045 - +3.4 103,054 + +0.0 103,060 + +0.7 103,130 - -1.0 103,134 + +0.6 103,135 - -0.9 103,170 + +0.7 103,171 - +1.7 103,171 - +1.3 103,172 + +0.5 103,172 + +1.0 103,172 + +0.6 103,172 + +2.0 103,173 - -0.0 103,174 + -0.3 103,174 + +0.2 103,175 - +0.3 103,175 - -0.2 103,194 + -0.9 103,235 - +0.5 103,278 - +0.9 103,297 - -0.9 103,407 + BACOVA_00846 0.13 -1.2 103,408 - BACOVA_00846 0.13 -0.9 103,411 + BACOVA_00846 0.13 -1.0 103,412 - BACOVA_00846 0.13 +0.5 103,440 - BACOVA_00846 0.15 -1.3 103,444 + BACOVA_00846 0.15 +1.0 103,444 + BACOVA_00846 0.15 -0.3 103,445 - BACOVA_00846 0.15 +0.8 103,475 + BACOVA_00846 0.16 +0.6 103,506 + BACOVA_00846 0.17 -0.3 103,516 - BACOVA_00846 0.18 -0.2 103,527 + BACOVA_00846 0.18 -0.3 103,530 - BACOVA_00846 0.19 -1.0 103,553 + BACOVA_00846 0.20 -0.5 103,554 - BACOVA_00846 0.20 -1.7 103,596 + BACOVA_00846 0.21 +0.0 103,609 - BACOVA_00846 0.22 -0.7 103,659 - BACOVA_00846 0.24 -0.0 103,767 + BACOVA_00846 0.29 +0.7 103,767 + BACOVA_00846 0.29 +0.6 103,767 + BACOVA_00846 0.29 -1.3 103,881 + BACOVA_00846 0.34 -0.1 103,882 - BACOVA_00846 0.34 +0.7 103,890 + BACOVA_00846 0.35 +0.3 103,891 - BACOVA_00846 0.35 +0.4 103,892 + BACOVA_00846 0.35 +0.1 103,896 + BACOVA_00846 0.35 +0.2 103,896 + BACOVA_00846 0.35 -1.2 103,897 - BACOVA_00846 0.35 -1.7 104,003 + BACOVA_00846 0.40 -0.1 104,004 - BACOVA_00846 0.40 -1.0 104,004 - BACOVA_00846 0.40 +0.3 104,004 - BACOVA_00846 0.40 +0.2 104,018 + BACOVA_00846 0.40 +1.0 104,019 - BACOVA_00846 0.40 +0.2 104,029 + BACOVA_00846 0.41 +0.7 104,029 + BACOVA_00846 0.41 +0.3 104,071 - BACOVA_00846 0.43 +0.7 104,088 - BACOVA_00846 0.43 -0.7 104,099 + BACOVA_00846 0.44 +0.4 104,103 + BACOVA_00846 0.44 -1.0 104,112 + BACOVA_00846 0.44 +0.8 104,117 - BACOVA_00846 0.45 -0.7 104,151 + BACOVA_00846 0.46 -1.2 104,200 + BACOVA_00846 0.48 +0.6 104,233 + BACOVA_00846 0.50 +1.1 104,302 - BACOVA_00846 0.53 -0.4 104,303 + BACOVA_00846 0.53 +1.7 104,303 + BACOVA_00846 0.53 +1.7 104,320 + BACOVA_00846 0.54 -1.5 104,320 + BACOVA_00846 0.54 +0.4 104,320 + BACOVA_00846 0.54 +1.3 104,320 + BACOVA_00846 0.54 +0.1 104,321 - BACOVA_00846 0.54 -0.0 104,321 - BACOVA_00846 0.54 -1.3 104,321 - BACOVA_00846 0.54 +0.7 104,321 - BACOVA_00846 0.54 -0.5 104,322 + BACOVA_00846 0.54 +0.9 104,322 + BACOVA_00846 0.54 +0.8 104,366 + BACOVA_00846 0.56 -0.3 104,390 - BACOVA_00846 0.57 -0.2 104,394 + BACOVA_00846 0.57 -0.3 104,394 + BACOVA_00846 0.57 -0.0 104,398 + BACOVA_00846 0.57 +0.7 104,500 - BACOVA_00846 0.62 +0.9 104,500 - BACOVA_00846 0.62 +0.9 104,501 + BACOVA_00846 0.62 +0.6 104,566 + BACOVA_00846 0.65 -0.0 104,568 + BACOVA_00846 0.65 +1.0 104,568 + BACOVA_00846 0.65 +0.7 104,568 + BACOVA_00846 0.65 -0.3 104,568 + BACOVA_00846 0.65 -0.3 104,568 + BACOVA_00846 0.65 +0.3 104,568 + BACOVA_00846 0.65 -0.0 104,569 - BACOVA_00846 0.65 -2.8 104,569 - BACOVA_00846 0.65 +0.6 104,569 - BACOVA_00846 0.65 +0.8 104,569 - BACOVA_00846 0.65 +2.3 104,601 + BACOVA_00846 0.66 +0.6 104,601 + BACOVA_00846 0.66 -0.3 104,602 - BACOVA_00846 0.66 +0.3 104,602 - BACOVA_00846 0.66 -0.5 104,608 - BACOVA_00846 0.66 +0.4 104,608 - BACOVA_00846 0.66 +1.2 104,642 + BACOVA_00846 0.68 +0.9 104,659 + BACOVA_00846 0.69 +0.3 104,659 + BACOVA_00846 0.69 +0.9 104,659 + BACOVA_00846 0.69 +0.5 104,662 - BACOVA_00846 0.69 -0.7 104,662 - BACOVA_00846 0.69 +0.9 104,721 + BACOVA_00846 0.72 +1.9 104,721 + BACOVA_00846 0.72 -0.2 104,722 - BACOVA_00846 0.72 -0.4 104,722 - BACOVA_00846 0.72 -0.0 104,722 - BACOVA_00846 0.72 +0.4 104,722 - BACOVA_00846 0.72 +1.1 104,791 + BACOVA_00846 0.75 +0.6 104,791 + BACOVA_00846 0.75 +0.5 104,830 - BACOVA_00846 0.76 -1.2 104,902 - BACOVA_00846 0.80 +1.0 104,919 - BACOVA_00846 0.80 +0.7 104,925 + BACOVA_00846 0.81 +0.8 104,970 - BACOVA_00846 0.83 +1.3 104,970 - BACOVA_00846 0.83 +0.9 104,970 - BACOVA_00846 0.83 -2.0 105,017 - BACOVA_00846 0.85 -0.9 105,060 + BACOVA_00846 0.87 +0.5 105,094 + BACOVA_00846 0.88 -1.7 105,094 + BACOVA_00846 0.88 +0.3 105,094 + BACOVA_00846 0.88 -3.0 105,094 + BACOVA_00846 0.88 -2.9 105,095 - BACOVA_00846 0.88 +1.3 105,095 - BACOVA_00846 0.88 -1.5 105,095 - BACOVA_00846 0.88 -0.4 105,225 + -0.3 105,225 + -0.9 105,225 + -0.1 105,225 + +0.5 105,226 - -1.0 105,226 - +0.6 105,226 - +0.7 105,226 - +0.8 105,250 + +0.7 105,264 + +1.8 105,314 + +0.4 105,447 - -0.3 105,553 + -0.3 105,559 + +1.5 105,560 - +1.7 105,561 + -0.3 105,561 + -1.3 105,561 + -1.1 105,562 - -2.4 105,618 + +0.7 105,626 - -2.2 105,663 + +1.3 105,663 + -0.5 105,664 - -0.0 105,664 - +0.0 105,673 + -0.4 105,697 - -0.3 105,722 - +0.1 105,732 - -0.3 105,746 + +0.2 105,747 - +0.5 105,747 - +1.1 105,755 - -1.3 105,795 + +0.9 105,795 + +0.9 105,869 - -0.9 105,882 + +0.1 105,906 + +0.2 105,916 + -0.7 105,925 + -0.3 106,026 + BACOVA_00847 0.12 +2.3 106,026 + BACOVA_00847 0.12 +2.0 106,028 + BACOVA_00847 0.12 -0.3 106,136 - BACOVA_00847 0.22 +1.3 106,201 + BACOVA_00847 0.28 -0.9 106,249 - BACOVA_00847 0.33 -0.7 106,249 - BACOVA_00847 0.33 -1.5 106,277 - BACOVA_00847 0.35 +1.5 106,277 - BACOVA_00847 0.35 -1.0 106,277 - BACOVA_00847 0.35 +0.3 106,277 - BACOVA_00847 0.35 -1.0 106,298 + BACOVA_00847 0.37 +2.9 106,319 - BACOVA_00847 0.39 -0.5
Or see this region's nucleotide sequence