Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00315 and BACOVA_00316 are separated by 241 nucleotides BACOVA_00316 and BACOVA_00317 are separated by 127 nucleotides
BACOVA_00315: BACOVA_00315 - helicase C-terminal domain protein, at 582,140 to 584,344
_00315
BACOVA_00316: BACOVA_00316 - hypothetical protein, at 584,586 to 585,875
_00316
BACOVA_00317: BACOVA_00317 - hypothetical protein, at 586,003 to 586,914
_00317
Position (kb) 584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 583.612 kb on - strand, within BACOVA_00315 at 583.633 kb on + strand, within BACOVA_00315 at 583.684 kb on - strand, within BACOVA_00315 at 583.703 kb on - strand, within BACOVA_00315 at 583.704 kb on + strand, within BACOVA_00315 at 583.704 kb on + strand, within BACOVA_00315 at 583.733 kb on + strand, within BACOVA_00315 at 583.736 kb on - strand, within BACOVA_00315 at 583.746 kb on + strand, within BACOVA_00315 at 583.747 kb on - strand, within BACOVA_00315 at 583.760 kb on - strand, within BACOVA_00315 at 583.789 kb on - strand, within BACOVA_00315 at 583.793 kb on - strand, within BACOVA_00315 at 583.800 kb on + strand, within BACOVA_00315 at 583.815 kb on + strand, within BACOVA_00315 at 583.840 kb on + strand, within BACOVA_00315 at 583.840 kb on + strand, within BACOVA_00315 at 583.841 kb on - strand, within BACOVA_00315 at 583.860 kb on + strand, within BACOVA_00315 at 583.861 kb on - strand, within BACOVA_00315 at 583.861 kb on - strand, within BACOVA_00315 at 583.900 kb on + strand, within BACOVA_00315 at 583.932 kb on - strand, within BACOVA_00315 at 583.938 kb on + strand, within BACOVA_00315 at 584.018 kb on - strand, within BACOVA_00315 at 584.044 kb on - strand, within BACOVA_00315 at 584.055 kb on + strand, within BACOVA_00315 at 584.081 kb on + strand, within BACOVA_00315 at 584.081 kb on + strand, within BACOVA_00315 at 584.081 kb on + strand, within BACOVA_00315 at 584.085 kb on + strand, within BACOVA_00315 at 584.085 kb on + strand, within BACOVA_00315 at 584.109 kb on - strand, within BACOVA_00315 at 584.109 kb on - strand, within BACOVA_00315 at 584.113 kb on + strand, within BACOVA_00315 at 584.113 kb on + strand, within BACOVA_00315 at 584.117 kb on + strand, within BACOVA_00315 at 584.118 kb on - strand, within BACOVA_00315 at 584.118 kb on - strand, within BACOVA_00315 at 584.125 kb on + strand at 584.126 kb on - strand at 584.155 kb on - strand at 584.183 kb on + strand at 584.251 kb on + strand at 584.252 kb on - strand at 584.307 kb on + strand at 584.308 kb on - strand at 584.346 kb on - strand at 584.350 kb on + strand at 584.351 kb on - strand at 584.420 kb on - strand at 584.423 kb on + strand at 584.440 kb on + strand at 584.442 kb on + strand at 584.442 kb on + strand at 584.443 kb on - strand at 584.443 kb on - strand at 584.487 kb on - strand at 584.499 kb on - strand at 584.506 kb on - strand at 584.531 kb on - strand at 584.534 kb on - strand at 584.573 kb on + strand at 584.574 kb on - strand at 584.574 kb on - strand at 584.582 kb on + strand at 584.586 kb on - strand at 584.616 kb on + strand at 584.617 kb on - strand at 584.617 kb on - strand at 584.648 kb on + strand at 584.688 kb on - strand at 584.691 kb on - strand at 584.692 kb on + strand at 584.693 kb on - strand at 584.699 kb on - strand at 584.699 kb on - strand at 584.710 kb on + strand at 584.710 kb on + strand at 584.711 kb on - strand at 584.721 kb on + strand, within BACOVA_00316 at 584.722 kb on - strand, within BACOVA_00316 at 584.768 kb on - strand, within BACOVA_00316 at 584.792 kb on + strand, within BACOVA_00316 at 584.809 kb on + strand, within BACOVA_00316 at 584.832 kb on - strand, within BACOVA_00316 at 584.832 kb on - strand, within BACOVA_00316 at 584.900 kb on - strand, within BACOVA_00316 at 584.909 kb on + strand, within BACOVA_00316 at 584.909 kb on + strand, within BACOVA_00316 at 584.910 kb on - strand, within BACOVA_00316 at 584.910 kb on - strand, within BACOVA_00316 at 584.912 kb on - strand, within BACOVA_00316 at 584.912 kb on - strand, within BACOVA_00316 at 584.920 kb on + strand, within BACOVA_00316 at 584.920 kb on + strand, within BACOVA_00316 at 584.920 kb on + strand, within BACOVA_00316 at 584.921 kb on - strand, within BACOVA_00316 at 585.047 kb on - strand, within BACOVA_00316 at 585.058 kb on - strand, within BACOVA_00316 at 585.070 kb on + strand, within BACOVA_00316 at 585.070 kb on + strand, within BACOVA_00316 at 585.123 kb on - strand, within BACOVA_00316 at 585.136 kb on - strand, within BACOVA_00316 at 585.139 kb on - strand, within BACOVA_00316 at 585.140 kb on + strand, within BACOVA_00316 at 585.143 kb on + strand, within BACOVA_00316 at 585.143 kb on + strand, within BACOVA_00316 at 585.145 kb on + strand, within BACOVA_00316 at 585.157 kb on - strand, within BACOVA_00316 at 585.182 kb on + strand, within BACOVA_00316 at 585.183 kb on - strand, within BACOVA_00316 at 585.191 kb on - strand, within BACOVA_00316 at 585.192 kb on + strand, within BACOVA_00316 at 585.193 kb on - strand, within BACOVA_00316 at 585.194 kb on + strand, within BACOVA_00316 at 585.195 kb on - strand, within BACOVA_00316 at 585.195 kb on - strand, within BACOVA_00316 at 585.199 kb on + strand, within BACOVA_00316 at 585.200 kb on - strand, within BACOVA_00316 at 585.200 kb on - strand, within BACOVA_00316 at 585.202 kb on + strand, within BACOVA_00316 at 585.202 kb on + strand, within BACOVA_00316 at 585.209 kb on + strand, within BACOVA_00316 at 585.211 kb on + strand, within BACOVA_00316 at 585.243 kb on - strand, within BACOVA_00316 at 585.272 kb on - strand, within BACOVA_00316 at 585.281 kb on + strand, within BACOVA_00316 at 585.282 kb on - strand, within BACOVA_00316 at 585.300 kb on + strand, within BACOVA_00316 at 585.330 kb on + strand, within BACOVA_00316 at 585.336 kb on + strand, within BACOVA_00316 at 585.336 kb on + strand, within BACOVA_00316 at 585.346 kb on + strand, within BACOVA_00316 at 585.494 kb on + strand, within BACOVA_00316 at 585.527 kb on + strand, within BACOVA_00316 at 585.542 kb on - strand, within BACOVA_00316 at 585.571 kb on + strand, within BACOVA_00316 at 585.574 kb on + strand, within BACOVA_00316 at 585.574 kb on + strand, within BACOVA_00316 at 585.578 kb on + strand, within BACOVA_00316 at 585.611 kb on - strand, within BACOVA_00316 at 585.611 kb on - strand, within BACOVA_00316 at 585.644 kb on + strand, within BACOVA_00316 at 585.674 kb on - strand, within BACOVA_00316 at 585.677 kb on - strand, within BACOVA_00316 at 585.680 kb on + strand, within BACOVA_00316 at 585.713 kb on + strand, within BACOVA_00316 at 585.713 kb on + strand, within BACOVA_00316 at 585.744 kb on - strand, within BACOVA_00316 at 585.744 kb on - strand, within BACOVA_00316 at 585.754 kb on - strand at 585.756 kb on + strand at 585.756 kb on + strand at 585.797 kb on + strand at 585.797 kb on + strand at 585.798 kb on - strand at 585.806 kb on - strand at 585.858 kb on - strand at 585.901 kb on - strand at 585.953 kb on + strand at 586.019 kb on - strand at 586.019 kb on - strand at 586.020 kb on + strand at 586.021 kb on - strand at 586.023 kb on + strand at 586.062 kb on + strand at 586.077 kb on + strand at 586.078 kb on - strand at 586.102 kb on - strand, within BACOVA_00317 at 586.203 kb on + strand, within BACOVA_00317 at 586.215 kb on + strand, within BACOVA_00317 at 586.215 kb on + strand, within BACOVA_00317 at 586.241 kb on + strand, within BACOVA_00317 at 586.258 kb on + strand, within BACOVA_00317 at 586.263 kb on - strand, within BACOVA_00317 at 586.268 kb on + strand, within BACOVA_00317 at 586.437 kb on - strand, within BACOVA_00317 at 586.465 kb on - strand, within BACOVA_00317 at 586.512 kb on + strand, within BACOVA_00317 at 586.563 kb on + strand, within BACOVA_00317 at 586.571 kb on - strand, within BACOVA_00317 at 586.621 kb on + strand, within BACOVA_00317 at 586.621 kb on + strand, within BACOVA_00317 at 586.622 kb on - strand, within BACOVA_00317 at 586.631 kb on - strand, within BACOVA_00317 at 586.716 kb on + strand, within BACOVA_00317 at 586.716 kb on + strand, within BACOVA_00317 at 586.749 kb on - strand, within BACOVA_00317 at 586.755 kb on + strand, within BACOVA_00317 at 586.755 kb on + strand, within BACOVA_00317 at 586.755 kb on + strand, within BACOVA_00317 at 586.756 kb on - strand, within BACOVA_00317 at 586.759 kb on - strand, within BACOVA_00317 at 586.760 kb on + strand, within BACOVA_00317 at 586.760 kb on + strand, within BACOVA_00317 at 586.760 kb on + strand, within BACOVA_00317 at 586.760 kb on + strand, within BACOVA_00317 at 586.761 kb on - strand, within BACOVA_00317 at 586.788 kb on + strand, within BACOVA_00317 at 586.789 kb on - strand, within BACOVA_00317 at 586.789 kb on - strand, within BACOVA_00317 at 586.789 kb on - strand, within BACOVA_00317 at 586.844 kb on - strand at 586.874 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 583,612 - BACOVA_00315 0.67 +0.4 583,633 + BACOVA_00315 0.68 -0.2 583,684 - BACOVA_00315 0.70 -0.8 583,703 - BACOVA_00315 0.71 +1.3 583,704 + BACOVA_00315 0.71 +1.7 583,704 + BACOVA_00315 0.71 +0.5 583,733 + BACOVA_00315 0.72 +1.4 583,736 - BACOVA_00315 0.72 +0.2 583,746 + BACOVA_00315 0.73 +0.6 583,747 - BACOVA_00315 0.73 +0.9 583,760 - BACOVA_00315 0.73 -0.9 583,789 - BACOVA_00315 0.75 -1.2 583,793 - BACOVA_00315 0.75 -0.3 583,800 + BACOVA_00315 0.75 +0.9 583,815 + BACOVA_00315 0.76 -2.1 583,840 + BACOVA_00315 0.77 -1.5 583,840 + BACOVA_00315 0.77 -0.5 583,841 - BACOVA_00315 0.77 +0.3 583,860 + BACOVA_00315 0.78 +1.1 583,861 - BACOVA_00315 0.78 -0.0 583,861 - BACOVA_00315 0.78 +0.1 583,900 + BACOVA_00315 0.80 +0.9 583,932 - BACOVA_00315 0.81 +0.1 583,938 + BACOVA_00315 0.82 +1.3 584,018 - BACOVA_00315 0.85 +0.8 584,044 - BACOVA_00315 0.86 -0.8 584,055 + BACOVA_00315 0.87 -0.2 584,081 + BACOVA_00315 0.88 -1.7 584,081 + BACOVA_00315 0.88 -0.3 584,081 + BACOVA_00315 0.88 +0.6 584,085 + BACOVA_00315 0.88 +1.5 584,085 + BACOVA_00315 0.88 +0.5 584,109 - BACOVA_00315 0.89 -0.1 584,109 - BACOVA_00315 0.89 +0.3 584,113 + BACOVA_00315 0.89 -1.2 584,113 + BACOVA_00315 0.89 +1.1 584,117 + BACOVA_00315 0.90 -2.5 584,118 - BACOVA_00315 0.90 -0.3 584,118 - BACOVA_00315 0.90 -0.2 584,125 + +0.2 584,126 - +0.1 584,155 - +1.1 584,183 + -2.9 584,251 + +1.6 584,252 - -0.5 584,307 + -1.0 584,308 - +0.5 584,346 - -0.5 584,350 + -0.3 584,351 - -0.7 584,420 - +2.3 584,423 + +0.1 584,440 + +1.5 584,442 + -0.9 584,442 + +0.8 584,443 - -1.2 584,443 - +0.9 584,487 - -0.6 584,499 - +1.1 584,506 - +0.4 584,531 - +0.3 584,534 - +1.3 584,573 + -2.0 584,574 - -0.9 584,574 - +0.4 584,582 + -0.1 584,586 - +0.5 584,616 + +0.8 584,617 - -1.1 584,617 - -0.5 584,648 + +0.7 584,688 - -0.5 584,691 - -1.1 584,692 + +0.9 584,693 - -0.8 584,699 - +0.4 584,699 - +0.9 584,710 + +0.1 584,710 + +0.5 584,711 - +1.1 584,721 + BACOVA_00316 0.10 -0.9 584,722 - BACOVA_00316 0.11 +1.4 584,768 - BACOVA_00316 0.14 +2.3 584,792 + BACOVA_00316 0.16 -0.2 584,809 + BACOVA_00316 0.17 -0.9 584,832 - BACOVA_00316 0.19 +0.3 584,832 - BACOVA_00316 0.19 -0.9 584,900 - BACOVA_00316 0.24 -0.6 584,909 + BACOVA_00316 0.25 +0.1 584,909 + BACOVA_00316 0.25 +0.1 584,910 - BACOVA_00316 0.25 -0.3 584,910 - BACOVA_00316 0.25 +0.4 584,912 - BACOVA_00316 0.25 +0.1 584,912 - BACOVA_00316 0.25 -0.7 584,920 + BACOVA_00316 0.26 -0.7 584,920 + BACOVA_00316 0.26 +0.8 584,920 + BACOVA_00316 0.26 -1.5 584,921 - BACOVA_00316 0.26 +1.1 585,047 - BACOVA_00316 0.36 -0.8 585,058 - BACOVA_00316 0.37 -1.1 585,070 + BACOVA_00316 0.38 -0.7 585,070 + BACOVA_00316 0.38 -0.5 585,123 - BACOVA_00316 0.42 -0.5 585,136 - BACOVA_00316 0.43 +1.3 585,139 - BACOVA_00316 0.43 -1.6 585,140 + BACOVA_00316 0.43 +0.9 585,143 + BACOVA_00316 0.43 +0.7 585,143 + BACOVA_00316 0.43 +0.1 585,145 + BACOVA_00316 0.43 +0.1 585,157 - BACOVA_00316 0.44 -1.5 585,182 + BACOVA_00316 0.46 -0.7 585,183 - BACOVA_00316 0.46 -0.1 585,191 - BACOVA_00316 0.47 -0.2 585,192 + BACOVA_00316 0.47 +0.8 585,193 - BACOVA_00316 0.47 +2.9 585,194 + BACOVA_00316 0.47 +0.9 585,195 - BACOVA_00316 0.47 -1.2 585,195 - BACOVA_00316 0.47 +0.1 585,199 + BACOVA_00316 0.48 -1.2 585,200 - BACOVA_00316 0.48 +0.8 585,200 - BACOVA_00316 0.48 +0.1 585,202 + BACOVA_00316 0.48 -0.6 585,202 + BACOVA_00316 0.48 -0.2 585,209 + BACOVA_00316 0.48 -0.2 585,211 + BACOVA_00316 0.48 -1.1 585,243 - BACOVA_00316 0.51 -1.1 585,272 - BACOVA_00316 0.53 +1.1 585,281 + BACOVA_00316 0.54 +1.1 585,282 - BACOVA_00316 0.54 +1.4 585,300 + BACOVA_00316 0.55 -0.5 585,330 + BACOVA_00316 0.58 +0.8 585,336 + BACOVA_00316 0.58 +0.5 585,336 + BACOVA_00316 0.58 -0.2 585,346 + BACOVA_00316 0.59 -0.2 585,494 + BACOVA_00316 0.70 +1.9 585,527 + BACOVA_00316 0.73 +0.7 585,542 - BACOVA_00316 0.74 +1.7 585,571 + BACOVA_00316 0.76 +0.9 585,574 + BACOVA_00316 0.77 +0.9 585,574 + BACOVA_00316 0.77 +1.1 585,578 + BACOVA_00316 0.77 +0.5 585,611 - BACOVA_00316 0.79 +0.1 585,611 - BACOVA_00316 0.79 -0.8 585,644 + BACOVA_00316 0.82 -2.2 585,674 - BACOVA_00316 0.84 +1.6 585,677 - BACOVA_00316 0.85 +1.0 585,680 + BACOVA_00316 0.85 +0.8 585,713 + BACOVA_00316 0.87 +0.6 585,713 + BACOVA_00316 0.87 +0.1 585,744 - BACOVA_00316 0.90 +0.8 585,744 - BACOVA_00316 0.90 -0.1 585,754 - -0.2 585,756 + -0.5 585,756 + +0.5 585,797 + +0.1 585,797 + -1.1 585,798 - -1.9 585,806 - -0.5 585,858 - +0.3 585,901 - +3.4 585,953 + +0.1 586,019 - -2.2 586,019 - -0.0 586,020 + +1.6 586,021 - -1.9 586,023 + +0.6 586,062 + -0.6 586,077 + -0.6 586,078 - +0.2 586,102 - BACOVA_00317 0.11 -0.6 586,203 + BACOVA_00317 0.22 +1.0 586,215 + BACOVA_00317 0.23 -0.5 586,215 + BACOVA_00317 0.23 -0.2 586,241 + BACOVA_00317 0.26 -0.3 586,258 + BACOVA_00317 0.28 +0.0 586,263 - BACOVA_00317 0.29 +0.4 586,268 + BACOVA_00317 0.29 +1.1 586,437 - BACOVA_00317 0.48 -0.2 586,465 - BACOVA_00317 0.51 +1.6 586,512 + BACOVA_00317 0.56 +0.4 586,563 + BACOVA_00317 0.61 -1.6 586,571 - BACOVA_00317 0.62 +0.2 586,621 + BACOVA_00317 0.68 -0.1 586,621 + BACOVA_00317 0.68 +0.2 586,622 - BACOVA_00317 0.68 +0.4 586,631 - BACOVA_00317 0.69 -0.0 586,716 + BACOVA_00317 0.78 +1.1 586,716 + BACOVA_00317 0.78 +0.0 586,749 - BACOVA_00317 0.82 -1.6 586,755 + BACOVA_00317 0.82 -0.8 586,755 + BACOVA_00317 0.82 +0.6 586,755 + BACOVA_00317 0.82 -1.9 586,756 - BACOVA_00317 0.83 -1.1 586,759 - BACOVA_00317 0.83 +1.1 586,760 + BACOVA_00317 0.83 +0.5 586,760 + BACOVA_00317 0.83 -0.7 586,760 + BACOVA_00317 0.83 -0.3 586,760 + BACOVA_00317 0.83 +0.4 586,761 - BACOVA_00317 0.83 +0.8 586,788 + BACOVA_00317 0.86 -0.1 586,789 - BACOVA_00317 0.86 -1.9 586,789 - BACOVA_00317 0.86 +1.2 586,789 - BACOVA_00317 0.86 -0.9 586,844 - +0.5 586,874 + -0.6
Or see this region's nucleotide sequence