Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04724 and BACOVA_04725 are separated by 8 nucleotides BACOVA_04725 and BACOVA_04726 are separated by 23 nucleotides BACOVA_04726 and BACOVA_04727 are separated by 24 nucleotides BACOVA_04727 and BACOVA_04728 are separated by 14 nucleotides
BACOVA_04724: BACOVA_04724 - hypothetical protein, at 88,006 to 89,805
_04724
BACOVA_04725: BACOVA_04725 - hypothetical protein, at 89,814 to 90,095
_04725
BACOVA_04726: BACOVA_04726 - peptidase, M23 family, at 90,119 to 90,949
_04726
BACOVA_04727: BACOVA_04727 - hypothetical protein, at 90,974 to 91,639
_04727
BACOVA_04728: BACOVA_04728 - hypothetical protein, at 91,654 to 92,337
_04728
Position (kb) 90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 89.158 kb on - strand, within BACOVA_04724 at 89.315 kb on + strand, within BACOVA_04724 at 89.337 kb on + strand, within BACOVA_04724 at 89.338 kb on + strand, within BACOVA_04724 at 89.390 kb on + strand, within BACOVA_04724 at 89.391 kb on - strand, within BACOVA_04724 at 89.396 kb on + strand, within BACOVA_04724 at 89.397 kb on - strand, within BACOVA_04724 at 89.466 kb on + strand, within BACOVA_04724 at 89.489 kb on + strand, within BACOVA_04724 at 89.490 kb on - strand, within BACOVA_04724 at 89.490 kb on - strand, within BACOVA_04724 at 89.506 kb on + strand, within BACOVA_04724 at 89.549 kb on + strand, within BACOVA_04724 at 89.593 kb on + strand, within BACOVA_04724 at 89.594 kb on - strand, within BACOVA_04724 at 89.702 kb on + strand at 89.812 kb on + strand at 89.812 kb on + strand at 89.812 kb on + strand at 89.813 kb on - strand at 89.815 kb on + strand at 89.816 kb on - strand at 89.816 kb on - strand at 89.817 kb on + strand at 89.820 kb on - strand at 89.940 kb on + strand, within BACOVA_04725 at 90.057 kb on + strand, within BACOVA_04725 at 90.072 kb on + strand at 90.072 kb on + strand at 90.171 kb on + strand at 90.253 kb on + strand, within BACOVA_04726 at 90.253 kb on + strand, within BACOVA_04726 at 90.253 kb on + strand, within BACOVA_04726 at 90.253 kb on + strand, within BACOVA_04726 at 90.254 kb on - strand, within BACOVA_04726 at 90.254 kb on - strand, within BACOVA_04726 at 90.254 kb on - strand, within BACOVA_04726 at 90.289 kb on + strand, within BACOVA_04726 at 90.369 kb on + strand, within BACOVA_04726 at 90.370 kb on - strand, within BACOVA_04726 at 90.394 kb on + strand, within BACOVA_04726 at 90.395 kb on - strand, within BACOVA_04726 at 90.396 kb on + strand, within BACOVA_04726 at 90.396 kb on + strand, within BACOVA_04726 at 90.397 kb on - strand, within BACOVA_04726 at 90.397 kb on - strand, within BACOVA_04726 at 90.428 kb on + strand, within BACOVA_04726 at 90.429 kb on - strand, within BACOVA_04726 at 90.429 kb on - strand, within BACOVA_04726 at 90.440 kb on - strand, within BACOVA_04726 at 90.617 kb on + strand, within BACOVA_04726 at 90.678 kb on + strand, within BACOVA_04726 at 90.678 kb on + strand, within BACOVA_04726 at 90.691 kb on - strand, within BACOVA_04726 at 90.780 kb on + strand, within BACOVA_04726 at 90.780 kb on + strand, within BACOVA_04726 at 90.901 kb on + strand at 90.940 kb on + strand at 90.942 kb on + strand at 90.975 kb on + strand at 91.033 kb on + strand at 91.231 kb on + strand, within BACOVA_04727 at 91.612 kb on - strand at 91.639 kb on + strand at 91.708 kb on + strand at 91.708 kb on + strand at 91.778 kb on + strand, within BACOVA_04728 at 91.846 kb on + strand, within BACOVA_04728
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C) remove 89,158 - BACOVA_04724 0.64 -1.7 89,315 + BACOVA_04724 0.73 -0.1 89,337 + BACOVA_04724 0.74 -1.1 89,338 + BACOVA_04724 0.74 +0.3 89,390 + BACOVA_04724 0.77 -1.5 89,391 - BACOVA_04724 0.77 +0.2 89,396 + BACOVA_04724 0.77 -0.2 89,397 - BACOVA_04724 0.77 +0.3 89,466 + BACOVA_04724 0.81 +1.0 89,489 + BACOVA_04724 0.82 +0.3 89,490 - BACOVA_04724 0.82 -0.4 89,490 - BACOVA_04724 0.82 -2.1 89,506 + BACOVA_04724 0.83 +1.4 89,549 + BACOVA_04724 0.86 +1.9 89,593 + BACOVA_04724 0.88 -0.4 89,594 - BACOVA_04724 0.88 -2.3 89,702 + +1.4 89,812 + -0.4 89,812 + -1.5 89,812 + -1.0 89,813 - +0.2 89,815 + +0.3 89,816 - -0.8 89,816 - -2.7 89,817 + -2.0 89,820 - -0.4 89,940 + BACOVA_04725 0.45 -0.1 90,057 + BACOVA_04725 0.86 -1.0 90,072 + -0.3 90,072 + -0.1 90,171 + +1.0 90,253 + BACOVA_04726 0.16 -1.3 90,253 + BACOVA_04726 0.16 +1.1 90,253 + BACOVA_04726 0.16 +0.5 90,253 + BACOVA_04726 0.16 +2.5 90,254 - BACOVA_04726 0.16 +0.2 90,254 - BACOVA_04726 0.16 -1.0 90,254 - BACOVA_04726 0.16 -1.2 90,289 + BACOVA_04726 0.20 -0.7 90,369 + BACOVA_04726 0.30 -0.7 90,370 - BACOVA_04726 0.30 -1.6 90,394 + BACOVA_04726 0.33 -1.1 90,395 - BACOVA_04726 0.33 +0.9 90,396 + BACOVA_04726 0.33 +1.5 90,396 + BACOVA_04726 0.33 -0.3 90,397 - BACOVA_04726 0.33 -2.2 90,397 - BACOVA_04726 0.33 -1.6 90,428 + BACOVA_04726 0.37 -0.7 90,429 - BACOVA_04726 0.37 -1.0 90,429 - BACOVA_04726 0.37 -1.4 90,440 - BACOVA_04726 0.39 -0.2 90,617 + BACOVA_04726 0.60 +0.4 90,678 + BACOVA_04726 0.67 +0.9 90,678 + BACOVA_04726 0.67 -0.3 90,691 - BACOVA_04726 0.69 +0.3 90,780 + BACOVA_04726 0.80 +0.0 90,780 + BACOVA_04726 0.80 +0.3 90,901 + +1.2 90,940 + -1.8 90,942 + -0.7 90,975 + -0.4 91,033 + -0.3 91,231 + BACOVA_04727 0.39 -0.9 91,612 - -1.7 91,639 + -1.4 91,708 + +0.7 91,708 + +0.4 91,778 + BACOVA_04728 0.18 -0.2 91,846 + BACOVA_04728 0.28 +0.0
Or see this region's nucleotide sequence