Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04582

Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04581 and BACOVA_04582 overlap by 4 nucleotidesBACOVA_04582 and BACOVA_04583 are separated by 76 nucleotides BACOVA_04581: BACOVA_04581 - iron-only hydrogenase maturation rSAM protein HydE, at 525,968 to 527,020 _04581 BACOVA_04582: BACOVA_04582 - iron-only hydrogenase maturation rSAM protein HydG, at 527,017 to 528,438 _04582 BACOVA_04583: BACOVA_04583 - hydrogenase maturation GTPase HydF, at 528,515 to 529,705 _04583 Position (kb) 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 526.065 kb on - strandat 526.111 kb on + strand, within BACOVA_04581at 526.118 kb on + strand, within BACOVA_04581at 526.166 kb on + strand, within BACOVA_04581at 526.167 kb on - strand, within BACOVA_04581at 526.169 kb on + strand, within BACOVA_04581at 526.228 kb on + strand, within BACOVA_04581at 526.230 kb on + strand, within BACOVA_04581at 526.278 kb on + strand, within BACOVA_04581at 526.281 kb on + strand, within BACOVA_04581at 526.370 kb on - strand, within BACOVA_04581at 526.370 kb on - strand, within BACOVA_04581at 526.403 kb on + strand, within BACOVA_04581at 526.437 kb on - strand, within BACOVA_04581at 526.444 kb on - strand, within BACOVA_04581at 526.444 kb on - strand, within BACOVA_04581at 526.444 kb on - strand, within BACOVA_04581at 526.458 kb on - strand, within BACOVA_04581at 526.459 kb on + strand, within BACOVA_04581at 526.568 kb on - strand, within BACOVA_04581at 526.601 kb on - strand, within BACOVA_04581at 526.614 kb on + strand, within BACOVA_04581at 526.615 kb on - strand, within BACOVA_04581at 526.621 kb on + strand, within BACOVA_04581at 526.632 kb on + strand, within BACOVA_04581at 526.678 kb on + strand, within BACOVA_04581at 526.732 kb on - strand, within BACOVA_04581at 526.820 kb on - strand, within BACOVA_04581at 526.844 kb on - strand, within BACOVA_04581at 526.849 kb on + strand, within BACOVA_04581at 526.887 kb on + strand, within BACOVA_04581at 526.887 kb on + strand, within BACOVA_04581at 526.888 kb on - strand, within BACOVA_04581at 526.888 kb on - strand, within BACOVA_04581at 526.888 kb on - strand, within BACOVA_04581at 526.890 kb on - strand, within BACOVA_04581at 526.890 kb on - strand, within BACOVA_04581at 526.941 kb on + strandat 526.996 kb on + strandat 526.996 kb on + strandat 526.996 kb on + strandat 527.000 kb on + strandat 527.016 kb on + strandat 527.016 kb on + strandat 527.016 kb on + strandat 527.016 kb on + strandat 527.017 kb on - strandat 527.017 kb on - strandat 527.022 kb on - strandat 527.023 kb on + strandat 527.104 kb on - strandat 527.196 kb on + strand, within BACOVA_04582at 527.196 kb on + strand, within BACOVA_04582at 527.214 kb on - strand, within BACOVA_04582at 527.214 kb on - strand, within BACOVA_04582at 527.214 kb on - strand, within BACOVA_04582at 527.220 kb on + strand, within BACOVA_04582at 527.221 kb on - strand, within BACOVA_04582at 527.268 kb on + strand, within BACOVA_04582at 527.303 kb on - strand, within BACOVA_04582at 527.322 kb on - strand, within BACOVA_04582at 527.324 kb on - strand, within BACOVA_04582at 527.324 kb on - strand, within BACOVA_04582at 527.324 kb on - strand, within BACOVA_04582at 527.469 kb on - strand, within BACOVA_04582at 527.475 kb on + strand, within BACOVA_04582at 527.500 kb on + strand, within BACOVA_04582at 527.500 kb on + strand, within BACOVA_04582at 527.500 kb on + strand, within BACOVA_04582at 527.526 kb on + strand, within BACOVA_04582at 527.527 kb on - strand, within BACOVA_04582at 527.543 kb on + strand, within BACOVA_04582at 527.544 kb on - strand, within BACOVA_04582at 527.557 kb on - strand, within BACOVA_04582at 527.557 kb on - strand, within BACOVA_04582at 527.560 kb on - strand, within BACOVA_04582at 527.564 kb on + strand, within BACOVA_04582at 527.595 kb on + strand, within BACOVA_04582at 527.596 kb on - strand, within BACOVA_04582at 527.602 kb on - strand, within BACOVA_04582at 527.605 kb on + strand, within BACOVA_04582at 527.606 kb on - strand, within BACOVA_04582at 527.606 kb on - strand, within BACOVA_04582at 527.607 kb on + strand, within BACOVA_04582at 527.608 kb on - strand, within BACOVA_04582at 527.608 kb on - strand, within BACOVA_04582at 527.613 kb on - strand, within BACOVA_04582at 527.613 kb on - strand, within BACOVA_04582at 527.627 kb on - strand, within BACOVA_04582at 527.641 kb on + strand, within BACOVA_04582at 527.677 kb on + strand, within BACOVA_04582at 527.677 kb on + strand, within BACOVA_04582at 527.678 kb on - strand, within BACOVA_04582at 527.684 kb on - strand, within BACOVA_04582at 527.732 kb on + strand, within BACOVA_04582at 527.732 kb on + strand, within BACOVA_04582at 527.732 kb on + strand, within BACOVA_04582at 527.733 kb on - strand, within BACOVA_04582at 527.737 kb on - strand, within BACOVA_04582at 527.771 kb on - strand, within BACOVA_04582at 527.789 kb on + strand, within BACOVA_04582at 527.790 kb on - strand, within BACOVA_04582at 527.874 kb on + strand, within BACOVA_04582at 527.874 kb on + strand, within BACOVA_04582at 527.875 kb on - strand, within BACOVA_04582at 527.875 kb on - strand, within BACOVA_04582at 527.919 kb on + strand, within BACOVA_04582at 527.928 kb on - strand, within BACOVA_04582at 527.928 kb on - strand, within BACOVA_04582at 527.953 kb on + strand, within BACOVA_04582at 527.955 kb on + strand, within BACOVA_04582at 528.005 kb on + strand, within BACOVA_04582at 528.018 kb on + strand, within BACOVA_04582at 528.019 kb on - strand, within BACOVA_04582at 528.078 kb on - strand, within BACOVA_04582at 528.087 kb on + strand, within BACOVA_04582at 528.161 kb on - strand, within BACOVA_04582at 528.161 kb on - strand, within BACOVA_04582at 528.163 kb on - strand, within BACOVA_04582at 528.163 kb on - strand, within BACOVA_04582at 528.163 kb on - strand, within BACOVA_04582at 528.178 kb on - strand, within BACOVA_04582at 528.286 kb on + strand, within BACOVA_04582at 528.287 kb on - strand, within BACOVA_04582at 528.383 kb on + strandat 528.383 kb on + strandat 528.384 kb on - strandat 528.456 kb on + strandat 528.457 kb on - strandat 528.457 kb on - strandat 528.459 kb on + strandat 528.460 kb on - strandat 528.460 kb on - strandat 528.483 kb on - strandat 528.491 kb on + strandat 528.503 kb on - strandat 528.514 kb on + strandat 528.515 kb on - strandat 528.529 kb on + strandat 528.530 kb on - strandat 528.553 kb on + strandat 528.553 kb on + strandat 528.553 kb on + strandat 528.554 kb on - strandat 528.583 kb on + strandat 528.584 kb on - strandat 528.596 kb on - strandat 528.637 kb on + strand, within BACOVA_04583at 528.673 kb on + strand, within BACOVA_04583at 528.674 kb on - strand, within BACOVA_04583at 528.674 kb on - strand, within BACOVA_04583at 528.689 kb on - strand, within BACOVA_04583at 528.708 kb on + strand, within BACOVA_04583at 528.709 kb on - strand, within BACOVA_04583at 528.709 kb on - strand, within BACOVA_04583at 528.713 kb on - strand, within BACOVA_04583at 528.713 kb on - strand, within BACOVA_04583at 528.769 kb on - strand, within BACOVA_04583at 528.814 kb on + strand, within BACOVA_04583at 528.814 kb on + strand, within BACOVA_04583at 528.818 kb on - strand, within BACOVA_04583at 528.894 kb on + strand, within BACOVA_04583at 528.899 kb on - strand, within BACOVA_04583at 528.900 kb on + strand, within BACOVA_04583at 528.901 kb on - strand, within BACOVA_04583at 528.901 kb on - strand, within BACOVA_04583at 528.901 kb on - strand, within BACOVA_04583at 528.916 kb on + strand, within BACOVA_04583at 528.916 kb on + strand, within BACOVA_04583at 528.916 kb on + strand, within BACOVA_04583at 528.916 kb on + strand, within BACOVA_04583at 528.929 kb on + strand, within BACOVA_04583at 528.929 kb on + strand, within BACOVA_04583at 528.930 kb on - strand, within BACOVA_04583at 528.930 kb on - strand, within BACOVA_04583at 528.944 kb on + strand, within BACOVA_04583at 528.946 kb on + strand, within BACOVA_04583at 528.951 kb on + strand, within BACOVA_04583at 528.960 kb on + strand, within BACOVA_04583at 528.961 kb on - strand, within BACOVA_04583at 528.965 kb on - strand, within BACOVA_04583at 529.083 kb on + strand, within BACOVA_04583at 529.106 kb on - strand, within BACOVA_04583at 529.134 kb on + strand, within BACOVA_04583at 529.192 kb on + strand, within BACOVA_04583at 529.193 kb on - strand, within BACOVA_04583at 529.193 kb on - strand, within BACOVA_04583at 529.195 kb on + strand, within BACOVA_04583at 529.195 kb on + strand, within BACOVA_04583at 529.280 kb on + strand, within BACOVA_04583at 529.280 kb on + strand, within BACOVA_04583at 529.337 kb on + strand, within BACOVA_04583at 529.337 kb on + strand, within BACOVA_04583at 529.338 kb on - strand, within BACOVA_04583at 529.338 kb on - strand, within BACOVA_04583at 529.338 kb on - strand, within BACOVA_04583at 529.339 kb on + strand, within BACOVA_04583at 529.340 kb on - strand, within BACOVA_04583at 529.340 kb on - strand, within BACOVA_04583at 529.340 kb on - strand, within BACOVA_04583at 529.340 kb on - strand, within BACOVA_04583at 529.359 kb on - strand, within BACOVA_04583at 529.362 kb on + strand, within BACOVA_04583at 529.363 kb on - strand, within BACOVA_04583at 529.407 kb on + strand, within BACOVA_04583at 529.408 kb on - strand, within BACOVA_04583at 529.410 kb on + strand, within BACOVA_04583at 529.410 kb on + strand, within BACOVA_04583at 529.411 kb on - strand, within BACOVA_04583at 529.426 kb on + strand, within BACOVA_04583

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C)
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526,065 - +0.5
526,111 + BACOVA_04581 0.14 +0.1
526,118 + BACOVA_04581 0.14 +1.4
526,166 + BACOVA_04581 0.19 +2.1
526,167 - BACOVA_04581 0.19 -1.6
526,169 + BACOVA_04581 0.19 +1.0
526,228 + BACOVA_04581 0.25 -0.2
526,230 + BACOVA_04581 0.25 +0.3
526,278 + BACOVA_04581 0.29 +1.3
526,281 + BACOVA_04581 0.30 +1.0
526,370 - BACOVA_04581 0.38 +1.5
526,370 - BACOVA_04581 0.38 +0.4
526,403 + BACOVA_04581 0.41 -0.4
526,437 - BACOVA_04581 0.45 +1.8
526,444 - BACOVA_04581 0.45 +0.6
526,444 - BACOVA_04581 0.45 +1.0
526,444 - BACOVA_04581 0.45 +2.1
526,458 - BACOVA_04581 0.47 +0.4
526,459 + BACOVA_04581 0.47 +1.8
526,568 - BACOVA_04581 0.57 +0.7
526,601 - BACOVA_04581 0.60 -0.0
526,614 + BACOVA_04581 0.61 -0.4
526,615 - BACOVA_04581 0.61 -0.9
526,621 + BACOVA_04581 0.62 -0.9
526,632 + BACOVA_04581 0.63 +1.3
526,678 + BACOVA_04581 0.67 +0.7
526,732 - BACOVA_04581 0.73 +0.2
526,820 - BACOVA_04581 0.81 -1.7
526,844 - BACOVA_04581 0.83 -0.4
526,849 + BACOVA_04581 0.84 +0.4
526,887 + BACOVA_04581 0.87 +1.0
526,887 + BACOVA_04581 0.87 -0.8
526,888 - BACOVA_04581 0.87 -0.2
526,888 - BACOVA_04581 0.87 +0.4
526,888 - BACOVA_04581 0.87 +0.4
526,890 - BACOVA_04581 0.88 +1.0
526,890 - BACOVA_04581 0.88 +0.1
526,941 + +1.3
526,996 + +0.3
526,996 + +2.0
526,996 + -1.8
527,000 + +0.3
527,016 + +0.3
527,016 + -1.5
527,016 + +0.2
527,016 + -0.5
527,017 - +0.1
527,017 - +0.8
527,022 - -0.4
527,023 + +0.6
527,104 - +1.4
527,196 + BACOVA_04582 0.13 -0.3
527,196 + BACOVA_04582 0.13 +0.1
527,214 - BACOVA_04582 0.14 -0.7
527,214 - BACOVA_04582 0.14 +0.8
527,214 - BACOVA_04582 0.14 -0.3
527,220 + BACOVA_04582 0.14 +0.7
527,221 - BACOVA_04582 0.14 -0.5
527,268 + BACOVA_04582 0.18 -0.9
527,303 - BACOVA_04582 0.20 +0.4
527,322 - BACOVA_04582 0.21 -0.1
527,324 - BACOVA_04582 0.22 +0.8
527,324 - BACOVA_04582 0.22 +0.7
527,324 - BACOVA_04582 0.22 +0.5
527,469 - BACOVA_04582 0.32 +1.1
527,475 + BACOVA_04582 0.32 -0.5
527,500 + BACOVA_04582 0.34 +0.4
527,500 + BACOVA_04582 0.34 +0.7
527,500 + BACOVA_04582 0.34 +0.1
527,526 + BACOVA_04582 0.36 -0.8
527,527 - BACOVA_04582 0.36 +0.4
527,543 + BACOVA_04582 0.37 +0.9
527,544 - BACOVA_04582 0.37 +0.5
527,557 - BACOVA_04582 0.38 -0.0
527,557 - BACOVA_04582 0.38 +0.8
527,560 - BACOVA_04582 0.38 +0.3
527,564 + BACOVA_04582 0.38 +0.8
527,595 + BACOVA_04582 0.41 +2.3
527,596 - BACOVA_04582 0.41 +0.1
527,602 - BACOVA_04582 0.41 +0.9
527,605 + BACOVA_04582 0.41 -0.6
527,606 - BACOVA_04582 0.41 +0.3
527,606 - BACOVA_04582 0.41 +1.1
527,607 + BACOVA_04582 0.41 +1.0
527,608 - BACOVA_04582 0.42 +1.8
527,608 - BACOVA_04582 0.42 +0.4
527,613 - BACOVA_04582 0.42 -0.2
527,613 - BACOVA_04582 0.42 +0.7
527,627 - BACOVA_04582 0.43 -0.0
527,641 + BACOVA_04582 0.44 -2.9
527,677 + BACOVA_04582 0.46 +0.6
527,677 + BACOVA_04582 0.46 +1.4
527,678 - BACOVA_04582 0.46 -0.0
527,684 - BACOVA_04582 0.47 +0.2
527,732 + BACOVA_04582 0.50 +0.7
527,732 + BACOVA_04582 0.50 +0.6
527,732 + BACOVA_04582 0.50 -1.5
527,733 - BACOVA_04582 0.50 +1.0
527,737 - BACOVA_04582 0.51 -0.1
527,771 - BACOVA_04582 0.53 -0.7
527,789 + BACOVA_04582 0.54 +0.8
527,790 - BACOVA_04582 0.54 +2.0
527,874 + BACOVA_04582 0.60 -0.2
527,874 + BACOVA_04582 0.60 -1.1
527,875 - BACOVA_04582 0.60 -2.5
527,875 - BACOVA_04582 0.60 +1.3
527,919 + BACOVA_04582 0.63 +1.3
527,928 - BACOVA_04582 0.64 +0.5
527,928 - BACOVA_04582 0.64 +0.4
527,953 + BACOVA_04582 0.66 -0.1
527,955 + BACOVA_04582 0.66 +0.5
528,005 + BACOVA_04582 0.69 +0.2
528,018 + BACOVA_04582 0.70 -1.9
528,019 - BACOVA_04582 0.70 -0.7
528,078 - BACOVA_04582 0.75 -0.2
528,087 + BACOVA_04582 0.75 -0.8
528,161 - BACOVA_04582 0.80 +1.0
528,161 - BACOVA_04582 0.80 +0.2
528,163 - BACOVA_04582 0.81 +0.6
528,163 - BACOVA_04582 0.81 -1.2
528,163 - BACOVA_04582 0.81 +0.5
528,178 - BACOVA_04582 0.82 -0.3
528,286 + BACOVA_04582 0.89 +0.3
528,287 - BACOVA_04582 0.89 +1.1
528,383 + -0.3
528,383 + +0.6
528,384 - +0.7
528,456 + -0.6
528,457 - +0.1
528,457 - -1.5
528,459 + +1.0
528,460 - +0.4
528,460 - -0.0
528,483 - +0.8
528,491 + -2.1
528,503 - +0.6
528,514 + +0.4
528,515 - -1.0
528,529 + -1.9
528,530 - +0.7
528,553 + +0.6
528,553 + -0.4
528,553 + +0.1
528,554 - +0.5
528,583 + +0.4
528,584 - +1.5
528,596 - -0.4
528,637 + BACOVA_04583 0.10 +0.9
528,673 + BACOVA_04583 0.13 -0.7
528,674 - BACOVA_04583 0.13 +1.2
528,674 - BACOVA_04583 0.13 +0.9
528,689 - BACOVA_04583 0.15 +0.5
528,708 + BACOVA_04583 0.16 +1.1
528,709 - BACOVA_04583 0.16 -0.9
528,709 - BACOVA_04583 0.16 -0.0
528,713 - BACOVA_04583 0.17 -1.0
528,713 - BACOVA_04583 0.17 +0.8
528,769 - BACOVA_04583 0.21 +0.3
528,814 + BACOVA_04583 0.25 -0.9
528,814 + BACOVA_04583 0.25 +0.1
528,818 - BACOVA_04583 0.25 -1.0
528,894 + BACOVA_04583 0.32 +0.0
528,899 - BACOVA_04583 0.32 +0.6
528,900 + BACOVA_04583 0.32 -0.9
528,901 - BACOVA_04583 0.32 +1.7
528,901 - BACOVA_04583 0.32 +0.7
528,901 - BACOVA_04583 0.32 +0.8
528,916 + BACOVA_04583 0.34 +1.4
528,916 + BACOVA_04583 0.34 +0.7
528,916 + BACOVA_04583 0.34 +1.8
528,916 + BACOVA_04583 0.34 +1.6
528,929 + BACOVA_04583 0.35 -0.7
528,929 + BACOVA_04583 0.35 +0.2
528,930 - BACOVA_04583 0.35 +0.5
528,930 - BACOVA_04583 0.35 -0.1
528,944 + BACOVA_04583 0.36 -0.3
528,946 + BACOVA_04583 0.36 +0.4
528,951 + BACOVA_04583 0.37 -0.0
528,960 + BACOVA_04583 0.37 +0.5
528,961 - BACOVA_04583 0.37 +0.2
528,965 - BACOVA_04583 0.38 +1.0
529,083 + BACOVA_04583 0.48 +1.7
529,106 - BACOVA_04583 0.50 +1.0
529,134 + BACOVA_04583 0.52 +0.5
529,192 + BACOVA_04583 0.57 +0.1
529,193 - BACOVA_04583 0.57 +0.5
529,193 - BACOVA_04583 0.57 -1.2
529,195 + BACOVA_04583 0.57 +0.6
529,195 + BACOVA_04583 0.57 +2.5
529,280 + BACOVA_04583 0.64 +0.4
529,280 + BACOVA_04583 0.64 +0.2
529,337 + BACOVA_04583 0.69 -0.6
529,337 + BACOVA_04583 0.69 +1.4
529,338 - BACOVA_04583 0.69 -0.6
529,338 - BACOVA_04583 0.69 +0.8
529,338 - BACOVA_04583 0.69 +1.0
529,339 + BACOVA_04583 0.69 -0.1
529,340 - BACOVA_04583 0.69 +0.6
529,340 - BACOVA_04583 0.69 +0.2
529,340 - BACOVA_04583 0.69 +0.0
529,340 - BACOVA_04583 0.69 +1.0
529,359 - BACOVA_04583 0.71 +1.7
529,362 + BACOVA_04583 0.71 +0.5
529,363 - BACOVA_04583 0.71 +0.7
529,407 + BACOVA_04583 0.75 +1.0
529,408 - BACOVA_04583 0.75 -0.4
529,410 + BACOVA_04583 0.75 +0.7
529,410 + BACOVA_04583 0.75 +0.1
529,411 - BACOVA_04583 0.75 +0.9
529,426 + BACOVA_04583 0.76 -0.5

Or see this region's nucleotide sequence