Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03539

Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03538 and BACOVA_03539 overlap by 32 nucleotidesBACOVA_03539 and BACOVA_03540 are separated by 76 nucleotides BACOVA_03538: BACOVA_03538 - aminotransferase, class I/II, at 313,119 to 314,267 _03538 BACOVA_03539: BACOVA_03539 - hypothetical protein, at 314,236 to 314,469 _03539 BACOVA_03540: BACOVA_03540 - glutamate racemase, at 314,546 to 315,388 _03540 Position (kb) 314 315Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 313.252 kb on + strand, within BACOVA_03538at 313.288 kb on - strand, within BACOVA_03538at 313.310 kb on + strand, within BACOVA_03538at 313.363 kb on + strand, within BACOVA_03538at 313.363 kb on + strand, within BACOVA_03538at 313.560 kb on + strand, within BACOVA_03538at 313.576 kb on + strand, within BACOVA_03538at 313.576 kb on + strand, within BACOVA_03538at 313.584 kb on - strand, within BACOVA_03538at 313.589 kb on + strand, within BACOVA_03538at 313.607 kb on + strand, within BACOVA_03538at 313.977 kb on + strand, within BACOVA_03538at 313.977 kb on + strand, within BACOVA_03538at 314.003 kb on + strand, within BACOVA_03538at 314.004 kb on - strand, within BACOVA_03538at 314.033 kb on + strand, within BACOVA_03538at 314.038 kb on + strand, within BACOVA_03538at 314.038 kb on + strand, within BACOVA_03538at 314.039 kb on - strand, within BACOVA_03538at 314.097 kb on + strand, within BACOVA_03538at 314.142 kb on - strand, within BACOVA_03538at 314.142 kb on - strand, within BACOVA_03538at 314.178 kb on + strandat 314.179 kb on - strandat 314.179 kb on - strandat 314.182 kb on + strandat 314.183 kb on - strandat 314.183 kb on - strandat 314.288 kb on + strand, within BACOVA_03539at 314.330 kb on + strand, within BACOVA_03539at 314.330 kb on + strand, within BACOVA_03539at 314.330 kb on + strand, within BACOVA_03539at 314.331 kb on - strand, within BACOVA_03539at 314.331 kb on - strand, within BACOVA_03539at 314.331 kb on - strand, within BACOVA_03539at 314.339 kb on - strand, within BACOVA_03539at 314.350 kb on - strand, within BACOVA_03539at 314.350 kb on - strand, within BACOVA_03539at 314.376 kb on + strand, within BACOVA_03539at 314.379 kb on + strand, within BACOVA_03539at 314.379 kb on + strand, within BACOVA_03539at 314.380 kb on + strand, within BACOVA_03539at 314.440 kb on + strand, within BACOVA_03539at 314.441 kb on - strand, within BACOVA_03539at 314.451 kb on + strandat 314.454 kb on - strandat 314.475 kb on + strandat 314.476 kb on - strandat 314.492 kb on + strandat 314.493 kb on - strandat 314.502 kb on + strandat 314.503 kb on - strandat 315.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C)
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313,252 + BACOVA_03538 0.12 +0.4
313,288 - BACOVA_03538 0.15 -0.6
313,310 + BACOVA_03538 0.17 -0.3
313,363 + BACOVA_03538 0.21 -0.3
313,363 + BACOVA_03538 0.21 +0.7
313,560 + BACOVA_03538 0.38 +1.7
313,576 + BACOVA_03538 0.40 +1.0
313,576 + BACOVA_03538 0.40 +1.1
313,584 - BACOVA_03538 0.40 -0.6
313,589 + BACOVA_03538 0.41 -3.1
313,607 + BACOVA_03538 0.42 -0.1
313,977 + BACOVA_03538 0.75 -0.1
313,977 + BACOVA_03538 0.75 -0.5
314,003 + BACOVA_03538 0.77 +0.0
314,004 - BACOVA_03538 0.77 -0.6
314,033 + BACOVA_03538 0.80 +1.0
314,038 + BACOVA_03538 0.80 +0.7
314,038 + BACOVA_03538 0.80 -0.3
314,039 - BACOVA_03538 0.80 +0.7
314,097 + BACOVA_03538 0.85 +0.6
314,142 - BACOVA_03538 0.89 +1.0
314,142 - BACOVA_03538 0.89 +1.6
314,178 + +0.3
314,179 - +0.6
314,179 - +0.5
314,182 + -2.1
314,183 - +0.4
314,183 - +0.3
314,288 + BACOVA_03539 0.22 +0.6
314,330 + BACOVA_03539 0.40 -0.3
314,330 + BACOVA_03539 0.40 +1.2
314,330 + BACOVA_03539 0.40 -0.2
314,331 - BACOVA_03539 0.41 -0.7
314,331 - BACOVA_03539 0.41 +0.2
314,331 - BACOVA_03539 0.41 +0.2
314,339 - BACOVA_03539 0.44 +1.3
314,350 - BACOVA_03539 0.49 -0.0
314,350 - BACOVA_03539 0.49 +2.2
314,376 + BACOVA_03539 0.60 +0.3
314,379 + BACOVA_03539 0.61 +0.0
314,379 + BACOVA_03539 0.61 -0.6
314,380 + BACOVA_03539 0.62 +0.8
314,440 + BACOVA_03539 0.87 +1.0
314,441 - BACOVA_03539 0.88 -0.3
314,451 + +0.7
314,454 - -0.1
314,475 + -0.7
314,476 - -1.8
314,492 + -0.1
314,493 - -0.4
314,502 + +1.2
314,503 - +2.3
315,403 - -0.6

Or see this region's nucleotide sequence