Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03354

Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03351 and BACOVA_03352 are separated by 140 nucleotidesBACOVA_03352 and BACOVA_03353 are separated by 9 nucleotidesBACOVA_03353 and BACOVA_03354 are separated by 56 nucleotidesBACOVA_03354 and BACOVA_03355 are separated by 180 nucleotidesBACOVA_03355 and BACOVA_03356 are separated by 34 nucleotides BACOVA_03351: BACOVA_03351 - hypothetical protein, at 50,327 to 50,461 _03351 BACOVA_03352: BACOVA_03352 - putative DNA-binding protein, at 50,602 to 51,237 _03352 BACOVA_03353: BACOVA_03353 - hypothetical protein, at 51,247 to 51,402 _03353 BACOVA_03354: BACOVA_03354 - hypothetical protein, at 51,459 to 51,926 _03354 BACOVA_03355: BACOVA_03355 - hypothetical protein, at 52,107 to 52,229 _03355 BACOVA_03356: BACOVA_03356 - hypothetical protein, at 52,264 to 53,283 _03356 Position (kb) 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 50.499 kb on + strandat 50.521 kb on + strandat 50.543 kb on + strandat 50.547 kb on - strandat 50.549 kb on + strandat 50.607 kb on + strandat 50.608 kb on - strandat 50.610 kb on - strandat 50.691 kb on + strand, within BACOVA_03352at 50.823 kb on + strand, within BACOVA_03352at 50.823 kb on + strand, within BACOVA_03352at 50.823 kb on + strand, within BACOVA_03352at 50.839 kb on + strand, within BACOVA_03352at 50.840 kb on - strand, within BACOVA_03352at 50.886 kb on + strand, within BACOVA_03352at 50.887 kb on - strand, within BACOVA_03352at 50.986 kb on + strand, within BACOVA_03352at 50.986 kb on + strand, within BACOVA_03352at 50.987 kb on - strand, within BACOVA_03352at 51.023 kb on + strand, within BACOVA_03352at 51.023 kb on + strand, within BACOVA_03352at 51.024 kb on - strand, within BACOVA_03352at 51.027 kb on + strand, within BACOVA_03352at 51.027 kb on + strand, within BACOVA_03352at 51.027 kb on + strand, within BACOVA_03352at 51.043 kb on + strand, within BACOVA_03352at 51.063 kb on - strand, within BACOVA_03352at 51.089 kb on + strand, within BACOVA_03352at 51.090 kb on - strand, within BACOVA_03352at 51.090 kb on - strand, within BACOVA_03352at 51.090 kb on - strand, within BACOVA_03352at 51.171 kb on + strand, within BACOVA_03352at 51.185 kb on - strandat 51.258 kb on - strandat 51.258 kb on - strandat 51.258 kb on - strandat 51.282 kb on - strand, within BACOVA_03353at 51.282 kb on - strand, within BACOVA_03353at 51.366 kb on + strand, within BACOVA_03353at 51.373 kb on - strand, within BACOVA_03353at 51.375 kb on - strand, within BACOVA_03353at 51.375 kb on - strand, within BACOVA_03353at 51.383 kb on + strand, within BACOVA_03353at 51.384 kb on - strand, within BACOVA_03353at 51.405 kb on - strandat 51.405 kb on - strandat 51.418 kb on + strandat 51.440 kb on + strandat 51.440 kb on + strandat 51.443 kb on - strandat 51.460 kb on + strandat 51.461 kb on - strandat 51.464 kb on + strandat 51.464 kb on + strandat 51.513 kb on - strand, within BACOVA_03354at 51.525 kb on + strand, within BACOVA_03354at 51.554 kb on - strand, within BACOVA_03354at 51.554 kb on - strand, within BACOVA_03354at 51.554 kb on - strand, within BACOVA_03354at 51.555 kb on + strand, within BACOVA_03354at 51.577 kb on - strand, within BACOVA_03354at 51.585 kb on + strand, within BACOVA_03354at 51.591 kb on - strand, within BACOVA_03354at 51.617 kb on + strand, within BACOVA_03354at 51.618 kb on - strand, within BACOVA_03354at 51.643 kb on + strand, within BACOVA_03354at 51.664 kb on + strand, within BACOVA_03354at 51.724 kb on + strand, within BACOVA_03354at 51.725 kb on - strand, within BACOVA_03354at 51.754 kb on + strand, within BACOVA_03354at 51.808 kb on - strand, within BACOVA_03354at 51.812 kb on + strand, within BACOVA_03354at 51.813 kb on - strand, within BACOVA_03354at 51.902 kb on + strandat 51.902 kb on + strandat 51.932 kb on + strandat 51.955 kb on + strandat 51.956 kb on - strandat 51.991 kb on - strandat 51.994 kb on + strandat 52.012 kb on + strandat 52.013 kb on - strandat 52.030 kb on + strandat 52.031 kb on - strandat 52.031 kb on - strandat 52.031 kb on - strandat 52.031 kb on - strandat 52.033 kb on + strandat 52.033 kb on + strandat 52.033 kb on + strandat 52.034 kb on - strandat 52.057 kb on - strandat 52.096 kb on + strandat 52.102 kb on + strandat 52.134 kb on + strand, within BACOVA_03355at 52.173 kb on - strand, within BACOVA_03355at 52.173 kb on - strand, within BACOVA_03355at 52.173 kb on - strand, within BACOVA_03355at 52.175 kb on + strand, within BACOVA_03355at 52.175 kb on + strand, within BACOVA_03355at 52.176 kb on - strand, within BACOVA_03355at 52.176 kb on - strand, within BACOVA_03355at 52.176 kb on - strand, within BACOVA_03355at 52.181 kb on - strand, within BACOVA_03355at 52.193 kb on - strand, within BACOVA_03355at 52.198 kb on + strand, within BACOVA_03355at 52.199 kb on - strand, within BACOVA_03355at 52.290 kb on - strandat 52.290 kb on - strandat 52.290 kb on - strandat 52.301 kb on + strandat 52.301 kb on + strandat 52.301 kb on + strandat 52.302 kb on - strandat 52.302 kb on - strandat 52.364 kb on - strandat 52.414 kb on - strand, within BACOVA_03356at 52.414 kb on - strand, within BACOVA_03356at 52.444 kb on - strand, within BACOVA_03356at 52.481 kb on - strand, within BACOVA_03356at 52.497 kb on + strand, within BACOVA_03356at 52.524 kb on + strand, within BACOVA_03356at 52.540 kb on + strand, within BACOVA_03356at 52.541 kb on - strand, within BACOVA_03356at 52.541 kb on - strand, within BACOVA_03356at 52.543 kb on - strand, within BACOVA_03356at 52.543 kb on - strand, within BACOVA_03356at 52.565 kb on + strand, within BACOVA_03356at 52.565 kb on + strand, within BACOVA_03356at 52.625 kb on - strand, within BACOVA_03356at 52.625 kb on - strand, within BACOVA_03356at 52.647 kb on + strand, within BACOVA_03356at 52.686 kb on + strand, within BACOVA_03356at 52.707 kb on - strand, within BACOVA_03356at 52.786 kb on + strand, within BACOVA_03356at 52.790 kb on + strand, within BACOVA_03356at 52.792 kb on + strand, within BACOVA_03356at 52.792 kb on + strand, within BACOVA_03356at 52.793 kb on - strand, within BACOVA_03356at 52.793 kb on - strand, within BACOVA_03356at 52.804 kb on + strand, within BACOVA_03356at 52.808 kb on + strand, within BACOVA_03356at 52.822 kb on - strand, within BACOVA_03356at 52.822 kb on - strand, within BACOVA_03356at 52.826 kb on + strand, within BACOVA_03356at 52.826 kb on + strand, within BACOVA_03356at 52.826 kb on + strand, within BACOVA_03356at 52.827 kb on - strand, within BACOVA_03356at 52.827 kb on - strand, within BACOVA_03356at 52.832 kb on + strand, within BACOVA_03356at 52.833 kb on - strand, within BACOVA_03356at 52.893 kb on - strand, within BACOVA_03356at 52.893 kb on - strand, within BACOVA_03356

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C)
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50,499 + -1.8
50,521 + +0.4
50,543 + +0.9
50,547 - +1.0
50,549 + +0.1
50,607 + -0.5
50,608 - -2.0
50,610 - -0.9
50,691 + BACOVA_03352 0.14 -0.2
50,823 + BACOVA_03352 0.35 +0.5
50,823 + BACOVA_03352 0.35 -1.8
50,823 + BACOVA_03352 0.35 +0.3
50,839 + BACOVA_03352 0.37 +1.1
50,840 - BACOVA_03352 0.37 +2.4
50,886 + BACOVA_03352 0.45 +0.7
50,887 - BACOVA_03352 0.45 +1.5
50,986 + BACOVA_03352 0.60 -0.2
50,986 + BACOVA_03352 0.60 -0.3
50,987 - BACOVA_03352 0.61 +2.6
51,023 + BACOVA_03352 0.66 -0.0
51,023 + BACOVA_03352 0.66 +1.1
51,024 - BACOVA_03352 0.66 +0.1
51,027 + BACOVA_03352 0.67 +0.5
51,027 + BACOVA_03352 0.67 +0.8
51,027 + BACOVA_03352 0.67 -1.0
51,043 + BACOVA_03352 0.69 +0.2
51,063 - BACOVA_03352 0.72 +0.5
51,089 + BACOVA_03352 0.77 +0.3
51,090 - BACOVA_03352 0.77 +0.3
51,090 - BACOVA_03352 0.77 +0.1
51,090 - BACOVA_03352 0.77 -0.3
51,171 + BACOVA_03352 0.89 -0.5
51,185 - +0.9
51,258 - -0.3
51,258 - -1.2
51,258 - +0.4
51,282 - BACOVA_03353 0.22 +1.0
51,282 - BACOVA_03353 0.22 +0.1
51,366 + BACOVA_03353 0.76 -0.9
51,373 - BACOVA_03353 0.81 -0.1
51,375 - BACOVA_03353 0.82 +0.6
51,375 - BACOVA_03353 0.82 -0.0
51,383 + BACOVA_03353 0.87 -0.6
51,384 - BACOVA_03353 0.88 +0.6
51,405 - -1.0
51,405 - -0.8
51,418 + +0.3
51,440 + +0.5
51,440 + -0.3
51,443 - -0.4
51,460 + +0.5
51,461 - -0.3
51,464 + -0.8
51,464 + +1.0
51,513 - BACOVA_03354 0.12 -0.4
51,525 + BACOVA_03354 0.14 +0.7
51,554 - BACOVA_03354 0.20 -1.5
51,554 - BACOVA_03354 0.20 +1.2
51,554 - BACOVA_03354 0.20 -0.6
51,555 + BACOVA_03354 0.21 +0.5
51,577 - BACOVA_03354 0.25 +0.3
51,585 + BACOVA_03354 0.27 +1.7
51,591 - BACOVA_03354 0.28 +0.1
51,617 + BACOVA_03354 0.34 -0.3
51,618 - BACOVA_03354 0.34 +1.5
51,643 + BACOVA_03354 0.39 +1.5
51,664 + BACOVA_03354 0.44 +2.0
51,724 + BACOVA_03354 0.57 -1.0
51,725 - BACOVA_03354 0.57 -0.0
51,754 + BACOVA_03354 0.63 -1.4
51,808 - BACOVA_03354 0.75 +0.2
51,812 + BACOVA_03354 0.75 -0.1
51,813 - BACOVA_03354 0.76 -0.2
51,902 + -0.7
51,902 + -0.2
51,932 + +2.0
51,955 + -0.3
51,956 - +1.8
51,991 - +2.0
51,994 + +0.8
52,012 + +0.4
52,013 - -0.6
52,030 + -0.1
52,031 - -0.3
52,031 - -0.4
52,031 - +0.2
52,031 - +1.5
52,033 + -1.3
52,033 + -0.6
52,033 + +0.7
52,034 - -0.6
52,057 - -0.4
52,096 + -0.6
52,102 + +0.9
52,134 + BACOVA_03355 0.22 -0.5
52,173 - BACOVA_03355 0.54 +0.9
52,173 - BACOVA_03355 0.54 -1.3
52,173 - BACOVA_03355 0.54 +0.2
52,175 + BACOVA_03355 0.55 -0.0
52,175 + BACOVA_03355 0.55 +1.0
52,176 - BACOVA_03355 0.56 +0.3
52,176 - BACOVA_03355 0.56 +0.4
52,176 - BACOVA_03355 0.56 +0.8
52,181 - BACOVA_03355 0.60 -0.4
52,193 - BACOVA_03355 0.70 +0.8
52,198 + BACOVA_03355 0.74 -0.0
52,199 - BACOVA_03355 0.75 +1.0
52,290 - +0.4
52,290 - +0.2
52,290 - +0.8
52,301 + +0.8
52,301 + +0.8
52,301 + -1.3
52,302 - -0.2
52,302 - +1.0
52,364 - -0.3
52,414 - BACOVA_03356 0.15 -3.1
52,414 - BACOVA_03356 0.15 +0.5
52,444 - BACOVA_03356 0.18 -0.7
52,481 - BACOVA_03356 0.21 -2.2
52,497 + BACOVA_03356 0.23 -1.1
52,524 + BACOVA_03356 0.25 +1.0
52,540 + BACOVA_03356 0.27 -0.2
52,541 - BACOVA_03356 0.27 +2.7
52,541 - BACOVA_03356 0.27 -1.2
52,543 - BACOVA_03356 0.27 +0.8
52,543 - BACOVA_03356 0.27 +0.5
52,565 + BACOVA_03356 0.30 -0.5
52,565 + BACOVA_03356 0.30 -1.1
52,625 - BACOVA_03356 0.35 -1.8
52,625 - BACOVA_03356 0.35 -1.5
52,647 + BACOVA_03356 0.38 +0.2
52,686 + BACOVA_03356 0.41 -2.2
52,707 - BACOVA_03356 0.43 +0.6
52,786 + BACOVA_03356 0.51 -0.1
52,790 + BACOVA_03356 0.52 -1.6
52,792 + BACOVA_03356 0.52 +1.6
52,792 + BACOVA_03356 0.52 +0.7
52,793 - BACOVA_03356 0.52 +0.8
52,793 - BACOVA_03356 0.52 +1.0
52,804 + BACOVA_03356 0.53 +0.9
52,808 + BACOVA_03356 0.53 -1.0
52,822 - BACOVA_03356 0.55 +0.4
52,822 - BACOVA_03356 0.55 +0.9
52,826 + BACOVA_03356 0.55 -0.0
52,826 + BACOVA_03356 0.55 +1.5
52,826 + BACOVA_03356 0.55 -0.3
52,827 - BACOVA_03356 0.55 -0.6
52,827 - BACOVA_03356 0.55 +0.8
52,832 + BACOVA_03356 0.56 -0.2
52,833 - BACOVA_03356 0.56 +1.0
52,893 - BACOVA_03356 0.62 +0.5
52,893 - BACOVA_03356 0.62 -0.3

Or see this region's nucleotide sequence