Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03117 and BACOVA_03118 are separated by 218 nucleotides BACOVA_03118 and BACOVA_03119 are separated by 154 nucleotides
BACOVA_03117: BACOVA_03117 - DNA polymerase III, alpha subunit, at 199,662 to 203,468
_03117
BACOVA_03118: BACOVA_03118 - glycosyl hydrolase family 2, sugar binding domain protein, at 203,687 to 206,929
_03118
BACOVA_03119: BACOVA_03119 - hypothetical protein, at 207,084 to 208,469
_03119
Position (kb) 203
204
205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 203.493 kb on + strand at 203.494 kb on - strand at 203.500 kb on + strand at 203.512 kb on + strand at 203.518 kb on + strand at 203.542 kb on + strand at 203.542 kb on + strand at 203.543 kb on - strand at 203.544 kb on + strand at 203.598 kb on + strand at 203.599 kb on - strand at 203.609 kb on + strand at 203.609 kb on + strand at 203.609 kb on + strand at 203.610 kb on - strand at 203.628 kb on - strand at 203.668 kb on - strand at 203.672 kb on + strand at 203.721 kb on - strand at 203.721 kb on - strand at 203.767 kb on + strand at 203.768 kb on - strand at 203.768 kb on - strand at 203.798 kb on + strand at 203.806 kb on + strand at 203.833 kb on + strand at 203.833 kb on + strand at 203.833 kb on + strand at 203.833 kb on + strand at 203.838 kb on - strand at 203.838 kb on - strand at 203.912 kb on + strand at 203.913 kb on - strand at 203.925 kb on + strand at 203.926 kb on - strand at 203.926 kb on - strand at 203.926 kb on - strand at 203.926 kb on - strand at 203.926 kb on - strand at 203.981 kb on + strand at 203.997 kb on - strand at 203.999 kb on + strand at 203.999 kb on + strand at 203.999 kb on + strand at 203.999 kb on + strand at 204.001 kb on + strand at 204.002 kb on - strand at 204.046 kb on - strand, within BACOVA_03118 at 204.046 kb on - strand, within BACOVA_03118 at 204.068 kb on - strand, within BACOVA_03118 at 204.074 kb on - strand, within BACOVA_03118 at 204.130 kb on + strand, within BACOVA_03118 at 204.251 kb on - strand, within BACOVA_03118 at 204.281 kb on + strand, within BACOVA_03118 at 204.315 kb on - strand, within BACOVA_03118 at 204.368 kb on + strand, within BACOVA_03118 at 204.456 kb on + strand, within BACOVA_03118 at 204.457 kb on - strand, within BACOVA_03118 at 204.458 kb on + strand, within BACOVA_03118 at 204.462 kb on - strand, within BACOVA_03118 at 204.475 kb on + strand, within BACOVA_03118 at 204.475 kb on + strand, within BACOVA_03118 at 204.527 kb on - strand, within BACOVA_03118 at 204.542 kb on + strand, within BACOVA_03118 at 204.542 kb on + strand, within BACOVA_03118 at 204.558 kb on + strand, within BACOVA_03118 at 204.587 kb on + strand, within BACOVA_03118 at 204.588 kb on - strand, within BACOVA_03118 at 204.629 kb on - strand, within BACOVA_03118 at 204.726 kb on - strand, within BACOVA_03118 at 204.758 kb on + strand, within BACOVA_03118 at 204.797 kb on + strand, within BACOVA_03118 at 204.817 kb on + strand, within BACOVA_03118 at 204.828 kb on - strand, within BACOVA_03118 at 204.904 kb on + strand, within BACOVA_03118 at 204.922 kb on - strand, within BACOVA_03118 at 204.929 kb on - strand, within BACOVA_03118 at 204.964 kb on + strand, within BACOVA_03118 at 204.965 kb on - strand, within BACOVA_03118 at 204.965 kb on - strand, within BACOVA_03118 at 204.965 kb on - strand, within BACOVA_03118 at 204.989 kb on + strand, within BACOVA_03118 at 204.990 kb on - strand, within BACOVA_03118 at 205.006 kb on - strand, within BACOVA_03118 at 205.006 kb on - strand, within BACOVA_03118 at 205.038 kb on + strand, within BACOVA_03118 at 205.039 kb on - strand, within BACOVA_03118 at 205.084 kb on + strand, within BACOVA_03118 at 205.087 kb on - strand, within BACOVA_03118 at 205.168 kb on - strand, within BACOVA_03118 at 205.219 kb on - strand, within BACOVA_03118 at 205.223 kb on - strand, within BACOVA_03118 at 205.253 kb on + strand, within BACOVA_03118 at 205.254 kb on - strand, within BACOVA_03118 at 205.254 kb on - strand, within BACOVA_03118 at 205.366 kb on + strand, within BACOVA_03118 at 205.409 kb on - strand, within BACOVA_03118 at 205.448 kb on - strand, within BACOVA_03118 at 205.500 kb on + strand, within BACOVA_03118 at 205.501 kb on - strand, within BACOVA_03118 at 205.501 kb on - strand, within BACOVA_03118 at 205.517 kb on + strand, within BACOVA_03118 at 205.525 kb on + strand, within BACOVA_03118 at 205.526 kb on - strand, within BACOVA_03118 at 205.533 kb on + strand, within BACOVA_03118 at 205.533 kb on + strand, within BACOVA_03118 at 205.534 kb on - strand, within BACOVA_03118 at 205.608 kb on - strand, within BACOVA_03118 at 205.694 kb on - strand, within BACOVA_03118 at 205.752 kb on + strand, within BACOVA_03118 at 205.828 kb on + strand, within BACOVA_03118 at 205.908 kb on + strand, within BACOVA_03118 at 205.920 kb on + strand, within BACOVA_03118 at 205.939 kb on - strand, within BACOVA_03118 at 205.974 kb on - strand, within BACOVA_03118 at 205.998 kb on - strand, within BACOVA_03118 at 206.091 kb on + strand, within BACOVA_03118 at 206.124 kb on + strand, within BACOVA_03118 at 206.124 kb on + strand, within BACOVA_03118 at 206.124 kb on + strand, within BACOVA_03118 at 206.125 kb on - strand, within BACOVA_03118 at 206.134 kb on + strand, within BACOVA_03118 at 206.157 kb on + strand, within BACOVA_03118 at 206.158 kb on - strand, within BACOVA_03118 at 206.199 kb on - strand, within BACOVA_03118 at 206.199 kb on - strand, within BACOVA_03118 at 206.200 kb on + strand, within BACOVA_03118 at 206.241 kb on - strand, within BACOVA_03118 at 206.245 kb on + strand, within BACOVA_03118 at 206.246 kb on - strand, within BACOVA_03118 at 206.257 kb on + strand, within BACOVA_03118 at 206.333 kb on - strand, within BACOVA_03118 at 206.409 kb on + strand, within BACOVA_03118 at 206.423 kb on + strand, within BACOVA_03118 at 206.423 kb on + strand, within BACOVA_03118 at 206.424 kb on - strand, within BACOVA_03118 at 206.458 kb on + strand, within BACOVA_03118 at 206.466 kb on - strand, within BACOVA_03118 at 206.625 kb on - strand at 206.625 kb on - strand at 206.847 kb on + strand at 206.847 kb on + strand at 206.932 kb on - strand at 206.933 kb on + strand at 206.942 kb on - strand at 206.944 kb on - strand at 206.962 kb on + strand at 206.962 kb on + strand at 206.973 kb on - strand at 207.098 kb on + strand at 207.099 kb on - strand at 207.099 kb on - strand at 207.103 kb on + strand at 207.103 kb on + strand at 207.104 kb on - strand at 207.105 kb on + strand at 207.106 kb on - strand at 207.109 kb on - strand at 207.142 kb on + strand at 207.143 kb on - strand at 207.143 kb on - strand at 207.143 kb on - strand at 207.143 kb on - strand at 207.146 kb on + strand at 207.172 kb on + strand at 207.173 kb on - strand at 207.173 kb on - strand at 207.227 kb on + strand, within BACOVA_03119 at 207.291 kb on + strand, within BACOVA_03119 at 207.292 kb on - strand, within BACOVA_03119 at 207.292 kb on - strand, within BACOVA_03119 at 207.303 kb on - strand, within BACOVA_03119 at 207.342 kb on + strand, within BACOVA_03119 at 207.343 kb on - strand, within BACOVA_03119 at 207.389 kb on + strand, within BACOVA_03119 at 207.400 kb on + strand, within BACOVA_03119 at 207.408 kb on + strand, within BACOVA_03119 at 207.408 kb on + strand, within BACOVA_03119 at 207.409 kb on - strand, within BACOVA_03119 at 207.409 kb on - strand, within BACOVA_03119 at 207.409 kb on - strand, within BACOVA_03119 at 207.409 kb on - strand, within BACOVA_03119 at 207.409 kb on - strand, within BACOVA_03119 at 207.411 kb on - strand, within BACOVA_03119 at 207.413 kb on - strand, within BACOVA_03119 at 207.434 kb on + strand, within BACOVA_03119 at 207.434 kb on + strand, within BACOVA_03119 at 207.435 kb on - strand, within BACOVA_03119 at 207.522 kb on + strand, within BACOVA_03119 at 207.522 kb on + strand, within BACOVA_03119 at 207.526 kb on + strand, within BACOVA_03119 at 207.526 kb on + strand, within BACOVA_03119 at 207.527 kb on - strand, within BACOVA_03119 at 207.596 kb on - strand, within BACOVA_03119 at 207.625 kb on - strand, within BACOVA_03119 at 207.741 kb on - strand, within BACOVA_03119 at 207.768 kb on + strand, within BACOVA_03119 at 207.769 kb on - strand, within BACOVA_03119 at 207.896 kb on + strand, within BACOVA_03119
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C) remove 203,493 + +1.0 203,494 - +0.9 203,500 + -0.3 203,512 + -0.3 203,518 + +0.2 203,542 + -0.6 203,542 + -2.3 203,543 - -0.3 203,544 + +0.3 203,598 + +0.5 203,599 - +0.0 203,609 + -0.5 203,609 + -0.8 203,609 + -0.0 203,610 - +0.1 203,628 - -0.1 203,668 - -0.3 203,672 + -0.3 203,721 - +0.4 203,721 - -1.6 203,767 + +0.1 203,768 - -0.8 203,768 - +0.1 203,798 + -0.6 203,806 + -0.5 203,833 + -0.6 203,833 + -0.7 203,833 + -0.1 203,833 + -2.0 203,838 - +0.3 203,838 - -0.2 203,912 + +0.4 203,913 - -0.4 203,925 + +0.1 203,926 - -0.0 203,926 - -1.1 203,926 - +0.1 203,926 - -0.2 203,926 - -1.1 203,981 + -1.5 203,997 - -0.7 203,999 + -1.1 203,999 + -0.5 203,999 + +0.6 203,999 + -2.7 204,001 + -0.5 204,002 - +0.7 204,046 - BACOVA_03118 0.11 -0.7 204,046 - BACOVA_03118 0.11 +1.4 204,068 - BACOVA_03118 0.12 -1.2 204,074 - BACOVA_03118 0.12 -0.0 204,130 + BACOVA_03118 0.14 -0.8 204,251 - BACOVA_03118 0.17 +0.3 204,281 + BACOVA_03118 0.18 +0.0 204,315 - BACOVA_03118 0.19 -1.9 204,368 + BACOVA_03118 0.21 -0.5 204,456 + BACOVA_03118 0.24 -0.3 204,457 - BACOVA_03118 0.24 +0.6 204,458 + BACOVA_03118 0.24 -1.0 204,462 - BACOVA_03118 0.24 -0.6 204,475 + BACOVA_03118 0.24 -0.6 204,475 + BACOVA_03118 0.24 +0.1 204,527 - BACOVA_03118 0.26 +0.0 204,542 + BACOVA_03118 0.26 +0.1 204,542 + BACOVA_03118 0.26 +0.1 204,558 + BACOVA_03118 0.27 -0.2 204,587 + BACOVA_03118 0.28 -0.4 204,588 - BACOVA_03118 0.28 -0.6 204,629 - BACOVA_03118 0.29 +0.3 204,726 - BACOVA_03118 0.32 -0.5 204,758 + BACOVA_03118 0.33 +1.6 204,797 + BACOVA_03118 0.34 -0.7 204,817 + BACOVA_03118 0.35 -1.5 204,828 - BACOVA_03118 0.35 +0.0 204,904 + BACOVA_03118 0.38 +0.5 204,922 - BACOVA_03118 0.38 +0.0 204,929 - BACOVA_03118 0.38 -2.0 204,964 + BACOVA_03118 0.39 +0.4 204,965 - BACOVA_03118 0.39 -2.8 204,965 - BACOVA_03118 0.39 -0.7 204,965 - BACOVA_03118 0.39 +0.0 204,989 + BACOVA_03118 0.40 -0.7 204,990 - BACOVA_03118 0.40 +0.3 205,006 - BACOVA_03118 0.41 +0.8 205,006 - BACOVA_03118 0.41 +0.3 205,038 + BACOVA_03118 0.42 -1.0 205,039 - BACOVA_03118 0.42 -1.0 205,084 + BACOVA_03118 0.43 -1.4 205,087 - BACOVA_03118 0.43 -0.6 205,168 - BACOVA_03118 0.46 -0.1 205,219 - BACOVA_03118 0.47 -0.7 205,223 - BACOVA_03118 0.47 -0.2 205,253 + BACOVA_03118 0.48 -0.3 205,254 - BACOVA_03118 0.48 -0.2 205,254 - BACOVA_03118 0.48 -0.5 205,366 + BACOVA_03118 0.52 +0.6 205,409 - BACOVA_03118 0.53 -0.1 205,448 - BACOVA_03118 0.54 +0.3 205,500 + BACOVA_03118 0.56 -0.1 205,501 - BACOVA_03118 0.56 -0.8 205,501 - BACOVA_03118 0.56 -0.1 205,517 + BACOVA_03118 0.56 +0.1 205,525 + BACOVA_03118 0.57 +0.4 205,526 - BACOVA_03118 0.57 +0.5 205,533 + BACOVA_03118 0.57 +0.9 205,533 + BACOVA_03118 0.57 -0.7 205,534 - BACOVA_03118 0.57 -0.5 205,608 - BACOVA_03118 0.59 -2.8 205,694 - BACOVA_03118 0.62 -0.4 205,752 + BACOVA_03118 0.64 +0.0 205,828 + BACOVA_03118 0.66 -0.5 205,908 + BACOVA_03118 0.68 -0.1 205,920 + BACOVA_03118 0.69 +0.4 205,939 - BACOVA_03118 0.69 -0.2 205,974 - BACOVA_03118 0.71 +0.4 205,998 - BACOVA_03118 0.71 -0.6 206,091 + BACOVA_03118 0.74 -0.0 206,124 + BACOVA_03118 0.75 +0.6 206,124 + BACOVA_03118 0.75 -0.7 206,124 + BACOVA_03118 0.75 -0.3 206,125 - BACOVA_03118 0.75 +0.9 206,134 + BACOVA_03118 0.75 -0.5 206,157 + BACOVA_03118 0.76 -0.7 206,158 - BACOVA_03118 0.76 +0.9 206,199 - BACOVA_03118 0.77 -0.6 206,199 - BACOVA_03118 0.77 +0.5 206,200 + BACOVA_03118 0.77 -1.1 206,241 - BACOVA_03118 0.79 -0.7 206,245 + BACOVA_03118 0.79 +1.0 206,246 - BACOVA_03118 0.79 -2.1 206,257 + BACOVA_03118 0.79 -0.4 206,333 - BACOVA_03118 0.82 +0.3 206,409 + BACOVA_03118 0.84 +0.0 206,423 + BACOVA_03118 0.84 -1.5 206,423 + BACOVA_03118 0.84 -1.7 206,424 - BACOVA_03118 0.84 -0.2 206,458 + BACOVA_03118 0.85 +0.6 206,466 - BACOVA_03118 0.86 -1.7 206,625 - +0.0 206,625 - -0.1 206,847 + -1.1 206,847 + -0.1 206,932 - +2.7 206,933 + -1.1 206,942 - -0.5 206,944 - -1.0 206,962 + -0.5 206,962 + +0.9 206,973 - -0.1 207,098 + -0.0 207,099 - -0.3 207,099 - +0.0 207,103 + -0.3 207,103 + -0.7 207,104 - -1.1 207,105 + +0.5 207,106 - +1.4 207,109 - -0.6 207,142 + +0.0 207,143 - -0.7 207,143 - +0.0 207,143 - +0.4 207,143 - -0.5 207,146 + +0.7 207,172 + -0.1 207,173 - -0.8 207,173 - +0.6 207,227 + BACOVA_03119 0.10 -0.4 207,291 + BACOVA_03119 0.15 +0.3 207,292 - BACOVA_03119 0.15 -0.1 207,292 - BACOVA_03119 0.15 +0.3 207,303 - BACOVA_03119 0.16 -1.5 207,342 + BACOVA_03119 0.19 -0.7 207,343 - BACOVA_03119 0.19 -2.1 207,389 + BACOVA_03119 0.22 -0.0 207,400 + BACOVA_03119 0.23 +0.4 207,408 + BACOVA_03119 0.23 +0.2 207,408 + BACOVA_03119 0.23 -0.3 207,409 - BACOVA_03119 0.23 +0.2 207,409 - BACOVA_03119 0.23 -0.1 207,409 - BACOVA_03119 0.23 -1.5 207,409 - BACOVA_03119 0.23 +0.4 207,409 - BACOVA_03119 0.23 -0.4 207,411 - BACOVA_03119 0.24 -0.9 207,413 - BACOVA_03119 0.24 -2.5 207,434 + BACOVA_03119 0.25 +0.7 207,434 + BACOVA_03119 0.25 -0.6 207,435 - BACOVA_03119 0.25 +0.9 207,522 + BACOVA_03119 0.32 -0.1 207,522 + BACOVA_03119 0.32 -0.1 207,526 + BACOVA_03119 0.32 -0.1 207,526 + BACOVA_03119 0.32 +0.7 207,527 - BACOVA_03119 0.32 -2.8 207,596 - BACOVA_03119 0.37 -2.1 207,625 - BACOVA_03119 0.39 +1.3 207,741 - BACOVA_03119 0.47 -1.4 207,768 + BACOVA_03119 0.49 -0.8 207,769 - BACOVA_03119 0.49 -2.4 207,896 + BACOVA_03119 0.59 +0.7
Or see this region's nucleotide sequence