Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02806

Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02805 and BACOVA_02806 are separated by 206 nucleotidesBACOVA_02806 and BACOVA_02807 are separated by 44 nucleotides BACOVA_02805: BACOVA_02805 - TonB-linked outer membrane protein, SusC/RagA family, at 269,875 to 272,988 _02805 BACOVA_02806: BACOVA_02806 - glycosyl hydrolase, family 43, at 273,195 to 274,184 _02806 BACOVA_02807: BACOVA_02807 - hypothetical protein, at 274,229 to 275,854 _02807 Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1 2at 272.250 kb on + strand, within BACOVA_02805at 272.251 kb on - strand, within BACOVA_02805at 272.252 kb on + strand, within BACOVA_02805at 272.252 kb on + strand, within BACOVA_02805at 272.273 kb on + strand, within BACOVA_02805at 272.319 kb on + strand, within BACOVA_02805at 272.319 kb on + strand, within BACOVA_02805at 272.497 kb on + strand, within BACOVA_02805at 272.497 kb on + strand, within BACOVA_02805at 272.498 kb on - strand, within BACOVA_02805at 272.500 kb on + strand, within BACOVA_02805at 272.530 kb on - strand, within BACOVA_02805at 272.581 kb on - strand, within BACOVA_02805at 272.641 kb on + strand, within BACOVA_02805at 272.641 kb on + strand, within BACOVA_02805at 272.647 kb on + strand, within BACOVA_02805at 272.650 kb on + strand, within BACOVA_02805at 272.651 kb on - strand, within BACOVA_02805at 272.705 kb on - strandat 272.728 kb on - strandat 272.782 kb on - strandat 272.784 kb on + strandat 272.808 kb on + strandat 272.808 kb on + strandat 272.809 kb on - strandat 272.811 kb on - strandat 272.820 kb on - strandat 272.833 kb on + strandat 272.833 kb on + strandat 272.833 kb on + strandat 272.833 kb on + strandat 272.833 kb on + strandat 272.833 kb on + strandat 272.834 kb on - strandat 273.022 kb on + strandat 273.036 kb on - strandat 273.054 kb on + strandat 273.061 kb on + strandat 273.176 kb on + strandat 273.177 kb on - strandat 273.239 kb on + strandat 273.240 kb on - strandat 273.240 kb on - strandat 273.245 kb on - strandat 273.247 kb on - strandat 273.285 kb on - strandat 273.337 kb on + strand, within BACOVA_02806at 273.344 kb on - strand, within BACOVA_02806at 273.366 kb on + strand, within BACOVA_02806at 273.367 kb on - strand, within BACOVA_02806at 273.367 kb on - strand, within BACOVA_02806at 273.469 kb on + strand, within BACOVA_02806at 273.470 kb on - strand, within BACOVA_02806at 273.511 kb on + strand, within BACOVA_02806at 273.520 kb on + strand, within BACOVA_02806at 273.521 kb on - strand, within BACOVA_02806at 273.521 kb on - strand, within BACOVA_02806at 273.521 kb on - strand, within BACOVA_02806at 273.523 kb on + strand, within BACOVA_02806at 273.523 kb on + strand, within BACOVA_02806at 273.524 kb on - strand, within BACOVA_02806at 273.577 kb on + strand, within BACOVA_02806at 273.615 kb on - strand, within BACOVA_02806at 273.615 kb on - strand, within BACOVA_02806at 273.642 kb on - strand, within BACOVA_02806at 273.654 kb on + strand, within BACOVA_02806at 273.683 kb on + strand, within BACOVA_02806at 273.684 kb on - strand, within BACOVA_02806at 273.684 kb on - strand, within BACOVA_02806at 273.690 kb on - strand, within BACOVA_02806at 273.693 kb on - strand, within BACOVA_02806at 273.707 kb on - strand, within BACOVA_02806at 273.708 kb on + strand, within BACOVA_02806at 273.708 kb on + strand, within BACOVA_02806at 273.709 kb on - strand, within BACOVA_02806at 273.712 kb on + strand, within BACOVA_02806at 273.715 kb on + strand, within BACOVA_02806at 273.715 kb on + strand, within BACOVA_02806at 273.734 kb on + strand, within BACOVA_02806at 273.739 kb on - strand, within BACOVA_02806at 273.750 kb on + strand, within BACOVA_02806at 273.750 kb on + strand, within BACOVA_02806at 273.751 kb on - strand, within BACOVA_02806at 273.753 kb on - strand, within BACOVA_02806at 273.753 kb on - strand, within BACOVA_02806at 273.753 kb on - strand, within BACOVA_02806at 273.753 kb on - strand, within BACOVA_02806at 273.753 kb on - strand, within BACOVA_02806at 273.772 kb on - strand, within BACOVA_02806at 273.849 kb on - strand, within BACOVA_02806at 273.851 kb on - strand, within BACOVA_02806at 273.860 kb on - strand, within BACOVA_02806at 273.883 kb on + strand, within BACOVA_02806at 273.883 kb on + strand, within BACOVA_02806at 273.883 kb on + strand, within BACOVA_02806at 273.978 kb on + strand, within BACOVA_02806at 273.978 kb on + strand, within BACOVA_02806at 274.042 kb on + strand, within BACOVA_02806at 274.060 kb on + strand, within BACOVA_02806at 274.060 kb on + strand, within BACOVA_02806at 274.061 kb on - strand, within BACOVA_02806at 274.078 kb on + strand, within BACOVA_02806at 274.079 kb on - strand, within BACOVA_02806at 274.154 kb on + strandat 274.173 kb on - strandat 274.193 kb on + strandat 274.193 kb on + strandat 274.201 kb on - strandat 274.212 kb on - strandat 274.235 kb on + strandat 274.278 kb on - strandat 274.313 kb on + strandat 274.408 kb on + strand, within BACOVA_02807at 274.409 kb on - strand, within BACOVA_02807at 274.446 kb on + strand, within BACOVA_02807at 274.453 kb on + strand, within BACOVA_02807at 274.517 kb on + strand, within BACOVA_02807at 274.517 kb on + strand, within BACOVA_02807at 274.585 kb on + strand, within BACOVA_02807at 274.586 kb on - strand, within BACOVA_02807at 274.633 kb on - strand, within BACOVA_02807at 274.675 kb on + strand, within BACOVA_02807at 274.731 kb on + strand, within BACOVA_02807at 274.732 kb on - strand, within BACOVA_02807at 274.732 kb on - strand, within BACOVA_02807at 274.748 kb on - strand, within BACOVA_02807at 274.752 kb on + strand, within BACOVA_02807at 274.752 kb on + strand, within BACOVA_02807at 274.753 kb on - strand, within BACOVA_02807at 274.753 kb on - strand, within BACOVA_02807at 274.754 kb on + strand, within BACOVA_02807at 274.755 kb on - strand, within BACOVA_02807at 274.755 kb on - strand, within BACOVA_02807at 274.760 kb on - strand, within BACOVA_02807at 274.760 kb on - strand, within BACOVA_02807at 274.760 kb on - strand, within BACOVA_02807at 274.760 kb on - strand, within BACOVA_02807at 274.778 kb on + strand, within BACOVA_02807at 274.778 kb on + strand, within BACOVA_02807at 274.798 kb on + strand, within BACOVA_02807at 275.083 kb on + strand, within BACOVA_02807at 275.093 kb on - strand, within BACOVA_02807at 275.116 kb on + strand, within BACOVA_02807at 275.117 kb on - strand, within BACOVA_02807at 275.129 kb on - strand, within BACOVA_02807at 275.129 kb on - strand, within BACOVA_02807at 275.158 kb on + strand, within BACOVA_02807at 275.174 kb on - strand, within BACOVA_02807

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C)
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272,250 + BACOVA_02805 0.76 +0.1
272,251 - BACOVA_02805 0.76 -0.2
272,252 + BACOVA_02805 0.76 +0.8
272,252 + BACOVA_02805 0.76 +0.6
272,273 + BACOVA_02805 0.77 -0.6
272,319 + BACOVA_02805 0.78 -0.4
272,319 + BACOVA_02805 0.78 -0.1
272,497 + BACOVA_02805 0.84 +0.1
272,497 + BACOVA_02805 0.84 +0.8
272,498 - BACOVA_02805 0.84 -0.7
272,500 + BACOVA_02805 0.84 +0.1
272,530 - BACOVA_02805 0.85 -1.7
272,581 - BACOVA_02805 0.87 +0.8
272,641 + BACOVA_02805 0.89 +1.5
272,641 + BACOVA_02805 0.89 -1.4
272,647 + BACOVA_02805 0.89 +0.3
272,650 + BACOVA_02805 0.89 +0.5
272,651 - BACOVA_02805 0.89 +0.3
272,705 - -0.2
272,728 - -0.4
272,782 - -1.1
272,784 + +0.6
272,808 + +0.1
272,808 + -1.1
272,809 - +0.5
272,811 - -0.3
272,820 - +0.3
272,833 + +0.6
272,833 + -1.0
272,833 + +0.2
272,833 + +1.1
272,833 + +1.2
272,833 + -0.3
272,834 - -2.3
273,022 + +0.1
273,036 - +1.9
273,054 + +1.5
273,061 + +0.2
273,176 + -0.1
273,177 - -0.2
273,239 + -0.4
273,240 - -1.2
273,240 - -0.5
273,245 - -2.3
273,247 - -1.4
273,285 - +0.1
273,337 + BACOVA_02806 0.14 -0.8
273,344 - BACOVA_02806 0.15 -0.4
273,366 + BACOVA_02806 0.17 -0.4
273,367 - BACOVA_02806 0.17 -1.3
273,367 - BACOVA_02806 0.17 -1.1
273,469 + BACOVA_02806 0.28 -1.4
273,470 - BACOVA_02806 0.28 -0.9
273,511 + BACOVA_02806 0.32 +0.4
273,520 + BACOVA_02806 0.33 +0.2
273,521 - BACOVA_02806 0.33 +0.7
273,521 - BACOVA_02806 0.33 -0.8
273,521 - BACOVA_02806 0.33 +1.2
273,523 + BACOVA_02806 0.33 +0.7
273,523 + BACOVA_02806 0.33 -1.0
273,524 - BACOVA_02806 0.33 -0.0
273,577 + BACOVA_02806 0.39 -0.2
273,615 - BACOVA_02806 0.42 -0.9
273,615 - BACOVA_02806 0.42 +0.9
273,642 - BACOVA_02806 0.45 +0.1
273,654 + BACOVA_02806 0.46 +0.2
273,683 + BACOVA_02806 0.49 -0.4
273,684 - BACOVA_02806 0.49 -0.2
273,684 - BACOVA_02806 0.49 +0.6
273,690 - BACOVA_02806 0.50 +0.7
273,693 - BACOVA_02806 0.50 -1.4
273,707 - BACOVA_02806 0.52 +0.0
273,708 + BACOVA_02806 0.52 -0.5
273,708 + BACOVA_02806 0.52 -0.2
273,709 - BACOVA_02806 0.52 -0.7
273,712 + BACOVA_02806 0.52 +1.0
273,715 + BACOVA_02806 0.53 -0.7
273,715 + BACOVA_02806 0.53 -0.3
273,734 + BACOVA_02806 0.54 +0.6
273,739 - BACOVA_02806 0.55 +0.7
273,750 + BACOVA_02806 0.56 -0.6
273,750 + BACOVA_02806 0.56 +0.8
273,751 - BACOVA_02806 0.56 +0.4
273,753 - BACOVA_02806 0.56 +0.0
273,753 - BACOVA_02806 0.56 +1.7
273,753 - BACOVA_02806 0.56 +0.9
273,753 - BACOVA_02806 0.56 +0.5
273,753 - BACOVA_02806 0.56 +0.2
273,772 - BACOVA_02806 0.58 +0.1
273,849 - BACOVA_02806 0.66 -1.2
273,851 - BACOVA_02806 0.66 +1.3
273,860 - BACOVA_02806 0.67 -0.4
273,883 + BACOVA_02806 0.69 -1.1
273,883 + BACOVA_02806 0.69 +0.8
273,883 + BACOVA_02806 0.69 -1.2
273,978 + BACOVA_02806 0.79 -0.2
273,978 + BACOVA_02806 0.79 -0.5
274,042 + BACOVA_02806 0.86 +0.1
274,060 + BACOVA_02806 0.87 -0.4
274,060 + BACOVA_02806 0.87 +0.2
274,061 - BACOVA_02806 0.87 -0.4
274,078 + BACOVA_02806 0.89 -1.1
274,079 - BACOVA_02806 0.89 -0.4
274,154 + -0.9
274,173 - +0.1
274,193 + -0.2
274,193 + -2.7
274,201 - -1.5
274,212 - -0.6
274,235 + +1.3
274,278 - +0.3
274,313 + -1.0
274,408 + BACOVA_02807 0.11 +0.1
274,409 - BACOVA_02807 0.11 -0.9
274,446 + BACOVA_02807 0.13 +0.6
274,453 + BACOVA_02807 0.14 -0.5
274,517 + BACOVA_02807 0.18 -0.3
274,517 + BACOVA_02807 0.18 +0.1
274,585 + BACOVA_02807 0.22 +0.5
274,586 - BACOVA_02807 0.22 -2.0
274,633 - BACOVA_02807 0.25 +0.0
274,675 + BACOVA_02807 0.27 +0.3
274,731 + BACOVA_02807 0.31 -0.7
274,732 - BACOVA_02807 0.31 -0.7
274,732 - BACOVA_02807 0.31 +0.5
274,748 - BACOVA_02807 0.32 -0.5
274,752 + BACOVA_02807 0.32 +0.4
274,752 + BACOVA_02807 0.32 -0.7
274,753 - BACOVA_02807 0.32 +0.3
274,753 - BACOVA_02807 0.32 +1.3
274,754 + BACOVA_02807 0.32 +0.1
274,755 - BACOVA_02807 0.32 -0.6
274,755 - BACOVA_02807 0.32 +0.4
274,760 - BACOVA_02807 0.33 -0.4
274,760 - BACOVA_02807 0.33 +0.2
274,760 - BACOVA_02807 0.33 -1.3
274,760 - BACOVA_02807 0.33 +0.9
274,778 + BACOVA_02807 0.34 -1.4
274,778 + BACOVA_02807 0.34 -0.7
274,798 + BACOVA_02807 0.35 +0.6
275,083 + BACOVA_02807 0.53 +0.6
275,093 - BACOVA_02807 0.53 -1.4
275,116 + BACOVA_02807 0.55 -0.3
275,117 - BACOVA_02807 0.55 +0.2
275,129 - BACOVA_02807 0.55 +0.5
275,129 - BACOVA_02807 0.55 -0.9
275,158 + BACOVA_02807 0.57 -0.4
275,174 - BACOVA_02807 0.58 +0.5

Or see this region's nucleotide sequence