Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02520

Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02519 and BACOVA_02520 overlap by 4 nucleotidesBACOVA_02520 and BACOVA_02521 overlap by 4 nucleotidesBACOVA_02521 and BACOVA_02522 are separated by 9 nucleotidesBACOVA_02522 and BACOVA_02523 are separated by 126 nucleotides BACOVA_02519: BACOVA_02519 - histidine kinase, at 289,592 to 290,626 _02519 BACOVA_02520: BACOVA_02520 - histidine kinase, at 290,623 to 291,684 _02520 BACOVA_02521: BACOVA_02521 - response regulator receiver domain protein, at 291,681 to 292,403 _02521 BACOVA_02522: BACOVA_02522 - hypothetical protein, at 292,413 to 292,553 _02522 BACOVA_02523: BACOVA_02523 - hypothetical protein, at 292,680 to 292,925 _02523 Position (kb) 290 291 292Strain fitness (log2 ratio) -2 -1 0 1 2 3at 289.648 kb on - strandat 289.690 kb on + strandat 289.729 kb on - strand, within BACOVA_02519at 289.755 kb on + strand, within BACOVA_02519at 289.756 kb on - strand, within BACOVA_02519at 289.756 kb on - strand, within BACOVA_02519at 289.765 kb on + strand, within BACOVA_02519at 289.769 kb on + strand, within BACOVA_02519at 289.770 kb on - strand, within BACOVA_02519at 289.770 kb on - strand, within BACOVA_02519at 289.770 kb on - strand, within BACOVA_02519at 289.801 kb on + strand, within BACOVA_02519at 289.801 kb on + strand, within BACOVA_02519at 289.801 kb on + strand, within BACOVA_02519at 289.802 kb on - strand, within BACOVA_02519at 289.806 kb on - strand, within BACOVA_02519at 289.806 kb on - strand, within BACOVA_02519at 289.814 kb on + strand, within BACOVA_02519at 289.817 kb on - strand, within BACOVA_02519at 289.821 kb on + strand, within BACOVA_02519at 289.822 kb on - strand, within BACOVA_02519at 289.824 kb on - strand, within BACOVA_02519at 289.890 kb on - strand, within BACOVA_02519at 289.890 kb on - strand, within BACOVA_02519at 289.892 kb on + strand, within BACOVA_02519at 289.893 kb on - strand, within BACOVA_02519at 289.893 kb on - strand, within BACOVA_02519at 289.897 kb on + strand, within BACOVA_02519at 289.898 kb on - strand, within BACOVA_02519at 289.921 kb on - strand, within BACOVA_02519at 289.968 kb on + strand, within BACOVA_02519at 289.969 kb on - strand, within BACOVA_02519at 290.035 kb on - strand, within BACOVA_02519at 290.053 kb on + strand, within BACOVA_02519at 290.116 kb on - strand, within BACOVA_02519at 290.123 kb on - strand, within BACOVA_02519at 290.123 kb on - strand, within BACOVA_02519at 290.123 kb on - strand, within BACOVA_02519at 290.128 kb on - strand, within BACOVA_02519at 290.182 kb on - strand, within BACOVA_02519at 290.230 kb on - strand, within BACOVA_02519at 290.283 kb on + strand, within BACOVA_02519at 290.288 kb on - strand, within BACOVA_02519at 290.299 kb on + strand, within BACOVA_02519at 290.333 kb on + strand, within BACOVA_02519at 290.336 kb on - strand, within BACOVA_02519at 290.336 kb on - strand, within BACOVA_02519at 290.336 kb on - strand, within BACOVA_02519at 290.338 kb on - strand, within BACOVA_02519at 290.338 kb on - strand, within BACOVA_02519at 290.423 kb on - strand, within BACOVA_02519at 290.470 kb on + strand, within BACOVA_02519at 290.475 kb on - strand, within BACOVA_02519at 290.500 kb on - strand, within BACOVA_02519at 290.500 kb on - strand, within BACOVA_02519at 290.505 kb on + strand, within BACOVA_02519at 290.506 kb on - strand, within BACOVA_02519at 290.506 kb on - strand, within BACOVA_02519at 290.548 kb on - strandat 290.548 kb on - strandat 290.550 kb on - strandat 290.582 kb on - strandat 290.582 kb on - strandat 290.600 kb on - strandat 290.642 kb on + strandat 290.643 kb on - strandat 290.643 kb on - strandat 290.666 kb on + strandat 290.686 kb on - strandat 290.709 kb on + strandat 290.710 kb on - strandat 290.710 kb on - strandat 290.739 kb on - strand, within BACOVA_02520at 290.751 kb on + strand, within BACOVA_02520at 290.769 kb on - strand, within BACOVA_02520at 290.776 kb on + strand, within BACOVA_02520at 290.785 kb on - strand, within BACOVA_02520at 290.790 kb on - strand, within BACOVA_02520at 290.809 kb on - strand, within BACOVA_02520at 290.821 kb on - strand, within BACOVA_02520at 290.823 kb on - strand, within BACOVA_02520at 290.823 kb on - strand, within BACOVA_02520at 290.823 kb on - strand, within BACOVA_02520at 290.849 kb on - strand, within BACOVA_02520at 290.850 kb on + strand, within BACOVA_02520at 290.943 kb on - strand, within BACOVA_02520at 290.983 kb on - strand, within BACOVA_02520at 291.021 kb on - strand, within BACOVA_02520at 291.024 kb on - strand, within BACOVA_02520at 291.033 kb on - strand, within BACOVA_02520at 291.175 kb on - strand, within BACOVA_02520at 291.178 kb on - strand, within BACOVA_02520at 291.187 kb on - strand, within BACOVA_02520at 291.312 kb on - strand, within BACOVA_02520at 291.370 kb on - strand, within BACOVA_02520at 291.370 kb on - strand, within BACOVA_02520at 291.370 kb on - strand, within BACOVA_02520at 291.391 kb on - strand, within BACOVA_02520at 291.454 kb on - strand, within BACOVA_02520at 291.454 kb on - strand, within BACOVA_02520at 291.491 kb on - strand, within BACOVA_02520at 291.491 kb on - strand, within BACOVA_02520at 291.505 kb on - strand, within BACOVA_02520at 291.508 kb on - strand, within BACOVA_02520at 291.573 kb on - strand, within BACOVA_02520at 291.656 kb on - strandat 291.656 kb on - strandat 291.656 kb on - strandat 291.668 kb on + strandat 291.669 kb on - strandat 291.777 kb on - strand, within BACOVA_02521at 291.780 kb on - strand, within BACOVA_02521at 291.802 kb on - strand, within BACOVA_02521at 291.803 kb on + strand, within BACOVA_02521at 291.805 kb on + strand, within BACOVA_02521at 291.813 kb on + strand, within BACOVA_02521at 291.814 kb on - strand, within BACOVA_02521at 291.815 kb on + strand, within BACOVA_02521at 291.815 kb on + strand, within BACOVA_02521at 291.816 kb on - strand, within BACOVA_02521at 291.866 kb on - strand, within BACOVA_02521at 291.893 kb on + strand, within BACOVA_02521at 291.893 kb on + strand, within BACOVA_02521at 291.894 kb on - strand, within BACOVA_02521at 291.942 kb on + strand, within BACOVA_02521at 291.950 kb on - strand, within BACOVA_02521at 291.950 kb on - strand, within BACOVA_02521at 291.963 kb on + strand, within BACOVA_02521at 292.018 kb on + strand, within BACOVA_02521at 292.018 kb on + strand, within BACOVA_02521at 292.018 kb on + strand, within BACOVA_02521at 292.018 kb on + strand, within BACOVA_02521at 292.028 kb on + strand, within BACOVA_02521at 292.028 kb on + strand, within BACOVA_02521at 292.029 kb on - strand, within BACOVA_02521at 292.029 kb on - strand, within BACOVA_02521at 292.069 kb on + strand, within BACOVA_02521at 292.080 kb on + strand, within BACOVA_02521at 292.081 kb on - strand, within BACOVA_02521at 292.081 kb on - strand, within BACOVA_02521at 292.082 kb on + strand, within BACOVA_02521at 292.083 kb on - strand, within BACOVA_02521at 292.107 kb on + strand, within BACOVA_02521at 292.107 kb on + strand, within BACOVA_02521at 292.108 kb on - strand, within BACOVA_02521at 292.110 kb on - strand, within BACOVA_02521at 292.263 kb on + strand, within BACOVA_02521at 292.263 kb on + strand, within BACOVA_02521at 292.263 kb on + strand, within BACOVA_02521at 292.264 kb on - strand, within BACOVA_02521at 292.274 kb on + strand, within BACOVA_02521at 292.274 kb on + strand, within BACOVA_02521at 292.313 kb on + strand, within BACOVA_02521at 292.314 kb on - strand, within BACOVA_02521at 292.314 kb on - strand, within BACOVA_02521at 292.323 kb on + strand, within BACOVA_02521at 292.323 kb on + strand, within BACOVA_02521at 292.330 kb on + strand, within BACOVA_02521at 292.336 kb on + strandat 292.414 kb on + strandat 292.432 kb on - strand, within BACOVA_02522at 292.433 kb on + strand, within BACOVA_02522at 292.433 kb on + strand, within BACOVA_02522at 292.433 kb on + strand, within BACOVA_02522at 292.508 kb on - strand, within BACOVA_02522at 292.554 kb on + strandat 292.564 kb on + strandat 292.575 kb on + strandat 292.611 kb on + strandat 292.611 kb on + strandat 292.611 kb on + strandat 292.622 kb on - strandat 292.625 kb on + strandat 292.637 kb on - strandat 292.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C)
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289,648 - +0.6
289,690 + +2.4
289,729 - BACOVA_02519 0.13 -0.5
289,755 + BACOVA_02519 0.16 -0.7
289,756 - BACOVA_02519 0.16 -1.6
289,756 - BACOVA_02519 0.16 -1.2
289,765 + BACOVA_02519 0.17 -0.2
289,769 + BACOVA_02519 0.17 +0.8
289,770 - BACOVA_02519 0.17 +0.8
289,770 - BACOVA_02519 0.17 +0.2
289,770 - BACOVA_02519 0.17 -0.2
289,801 + BACOVA_02519 0.20 +0.6
289,801 + BACOVA_02519 0.20 +0.8
289,801 + BACOVA_02519 0.20 +0.8
289,802 - BACOVA_02519 0.20 -1.2
289,806 - BACOVA_02519 0.21 -0.5
289,806 - BACOVA_02519 0.21 -2.0
289,814 + BACOVA_02519 0.21 -0.0
289,817 - BACOVA_02519 0.22 -0.5
289,821 + BACOVA_02519 0.22 +0.7
289,822 - BACOVA_02519 0.22 +0.8
289,824 - BACOVA_02519 0.22 -0.5
289,890 - BACOVA_02519 0.29 -0.2
289,890 - BACOVA_02519 0.29 +0.1
289,892 + BACOVA_02519 0.29 -1.3
289,893 - BACOVA_02519 0.29 +0.0
289,893 - BACOVA_02519 0.29 +2.6
289,897 + BACOVA_02519 0.29 +0.8
289,898 - BACOVA_02519 0.30 +0.3
289,921 - BACOVA_02519 0.32 +1.1
289,968 + BACOVA_02519 0.36 -0.2
289,969 - BACOVA_02519 0.36 -0.1
290,035 - BACOVA_02519 0.43 +1.0
290,053 + BACOVA_02519 0.45 -1.5
290,116 - BACOVA_02519 0.51 +0.4
290,123 - BACOVA_02519 0.51 -0.2
290,123 - BACOVA_02519 0.51 -0.1
290,123 - BACOVA_02519 0.51 +0.3
290,128 - BACOVA_02519 0.52 +0.8
290,182 - BACOVA_02519 0.57 -0.5
290,230 - BACOVA_02519 0.62 +1.3
290,283 + BACOVA_02519 0.67 -1.2
290,288 - BACOVA_02519 0.67 -0.3
290,299 + BACOVA_02519 0.68 -0.5
290,333 + BACOVA_02519 0.72 -1.5
290,336 - BACOVA_02519 0.72 -1.7
290,336 - BACOVA_02519 0.72 +1.4
290,336 - BACOVA_02519 0.72 +0.4
290,338 - BACOVA_02519 0.72 +0.2
290,338 - BACOVA_02519 0.72 -0.2
290,423 - BACOVA_02519 0.80 -0.4
290,470 + BACOVA_02519 0.85 +0.4
290,475 - BACOVA_02519 0.85 +0.5
290,500 - BACOVA_02519 0.88 -0.1
290,500 - BACOVA_02519 0.88 +0.1
290,505 + BACOVA_02519 0.88 -0.2
290,506 - BACOVA_02519 0.88 +0.3
290,506 - BACOVA_02519 0.88 +0.2
290,548 - -0.8
290,548 - -0.7
290,550 - -0.4
290,582 - -0.7
290,582 - -0.9
290,600 - +1.1
290,642 + +1.6
290,643 - +1.1
290,643 - -0.2
290,666 + -1.2
290,686 - +0.5
290,709 + -2.2
290,710 - +0.1
290,710 - +0.1
290,739 - BACOVA_02520 0.11 +0.8
290,751 + BACOVA_02520 0.12 -0.2
290,769 - BACOVA_02520 0.14 +0.0
290,776 + BACOVA_02520 0.14 -0.7
290,785 - BACOVA_02520 0.15 -0.2
290,790 - BACOVA_02520 0.16 -1.0
290,809 - BACOVA_02520 0.18 +1.7
290,821 - BACOVA_02520 0.19 +0.1
290,823 - BACOVA_02520 0.19 +0.3
290,823 - BACOVA_02520 0.19 +0.6
290,823 - BACOVA_02520 0.19 +1.1
290,849 - BACOVA_02520 0.21 -0.5
290,850 + BACOVA_02520 0.21 -0.7
290,943 - BACOVA_02520 0.30 -0.2
290,983 - BACOVA_02520 0.34 -0.2
291,021 - BACOVA_02520 0.37 +0.1
291,024 - BACOVA_02520 0.38 -0.7
291,033 - BACOVA_02520 0.39 -0.4
291,175 - BACOVA_02520 0.52 +0.1
291,178 - BACOVA_02520 0.52 +0.4
291,187 - BACOVA_02520 0.53 -1.1
291,312 - BACOVA_02520 0.65 -0.5
291,370 - BACOVA_02520 0.70 -0.7
291,370 - BACOVA_02520 0.70 -0.6
291,370 - BACOVA_02520 0.70 -1.7
291,391 - BACOVA_02520 0.72 -0.9
291,454 - BACOVA_02520 0.78 -0.0
291,454 - BACOVA_02520 0.78 -0.3
291,491 - BACOVA_02520 0.82 +0.4
291,491 - BACOVA_02520 0.82 -0.2
291,505 - BACOVA_02520 0.83 -1.7
291,508 - BACOVA_02520 0.83 +0.8
291,573 - BACOVA_02520 0.89 +0.3
291,656 - -1.6
291,656 - -0.2
291,656 - +1.6
291,668 + +0.0
291,669 - +1.3
291,777 - BACOVA_02521 0.13 -0.2
291,780 - BACOVA_02521 0.14 -0.5
291,802 - BACOVA_02521 0.17 -0.2
291,803 + BACOVA_02521 0.17 +0.1
291,805 + BACOVA_02521 0.17 -2.3
291,813 + BACOVA_02521 0.18 -2.2
291,814 - BACOVA_02521 0.18 -0.4
291,815 + BACOVA_02521 0.19 +0.8
291,815 + BACOVA_02521 0.19 +0.8
291,816 - BACOVA_02521 0.19 +0.3
291,866 - BACOVA_02521 0.26 -1.7
291,893 + BACOVA_02521 0.29 +0.4
291,893 + BACOVA_02521 0.29 -1.0
291,894 - BACOVA_02521 0.29 -0.4
291,942 + BACOVA_02521 0.36 -0.3
291,950 - BACOVA_02521 0.37 -1.2
291,950 - BACOVA_02521 0.37 -0.2
291,963 + BACOVA_02521 0.39 -2.0
292,018 + BACOVA_02521 0.47 +1.4
292,018 + BACOVA_02521 0.47 -0.4
292,018 + BACOVA_02521 0.47 -0.6
292,018 + BACOVA_02521 0.47 -0.7
292,028 + BACOVA_02521 0.48 -0.4
292,028 + BACOVA_02521 0.48 +0.5
292,029 - BACOVA_02521 0.48 +0.8
292,029 - BACOVA_02521 0.48 -0.5
292,069 + BACOVA_02521 0.54 +0.5
292,080 + BACOVA_02521 0.55 -0.5
292,081 - BACOVA_02521 0.55 -0.6
292,081 - BACOVA_02521 0.55 +0.8
292,082 + BACOVA_02521 0.55 +0.1
292,083 - BACOVA_02521 0.56 +0.8
292,107 + BACOVA_02521 0.59 -0.5
292,107 + BACOVA_02521 0.59 -0.2
292,108 - BACOVA_02521 0.59 -2.0
292,110 - BACOVA_02521 0.59 +1.3
292,263 + BACOVA_02521 0.80 +0.6
292,263 + BACOVA_02521 0.80 +0.8
292,263 + BACOVA_02521 0.80 +1.3
292,264 - BACOVA_02521 0.81 +1.2
292,274 + BACOVA_02521 0.82 +0.7
292,274 + BACOVA_02521 0.82 -0.5
292,313 + BACOVA_02521 0.87 -0.3
292,314 - BACOVA_02521 0.88 -1.2
292,314 - BACOVA_02521 0.88 +1.2
292,323 + BACOVA_02521 0.89 +0.1
292,323 + BACOVA_02521 0.89 -0.0
292,330 + BACOVA_02521 0.90 +0.6
292,336 + -0.7
292,414 + +0.7
292,432 - BACOVA_02522 0.13 -1.7
292,433 + BACOVA_02522 0.14 +1.0
292,433 + BACOVA_02522 0.14 +0.7
292,433 + BACOVA_02522 0.14 +0.8
292,508 - BACOVA_02522 0.67 -0.2
292,554 + +3.0
292,564 + -0.7
292,575 + -0.0
292,611 + +1.3
292,611 + -0.4
292,611 + +0.8
292,622 - -0.0
292,625 + +1.1
292,637 - +0.4
292,675 - +0.8

Or see this region's nucleotide sequence