Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02489

Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02487 and BACOVA_02488 are separated by 99 nucleotidesBACOVA_02488 and BACOVA_02489 are separated by 56 nucleotidesBACOVA_02489 and BACOVA_02490 are separated by 97 nucleotides BACOVA_02487: BACOVA_02487 - AbgT transporter family, at 254,963 to 256,420 _02487 BACOVA_02488: BACOVA_02488 - RNA polymerase sigma-70 factor, at 256,520 to 257,128 _02488 BACOVA_02489: BACOVA_02489 - sigma factor regulatory protein, FecR/PupR family, at 257,185 to 258,213 _02489 BACOVA_02490: BACOVA_02490 - TonB-linked outer membrane protein, SusC/RagA family, at 258,311 to 261,730 _02490 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2 3at 256.199 kb on - strand, within BACOVA_02487at 256.200 kb on + strand, within BACOVA_02487at 256.228 kb on + strand, within BACOVA_02487at 256.246 kb on + strand, within BACOVA_02487at 256.246 kb on + strand, within BACOVA_02487at 256.258 kb on - strand, within BACOVA_02487at 256.279 kb on + strandat 256.284 kb on - strandat 256.284 kb on - strandat 256.295 kb on + strandat 256.300 kb on + strandat 256.314 kb on - strandat 256.332 kb on - strandat 256.334 kb on - strandat 256.343 kb on + strandat 256.350 kb on + strandat 256.419 kb on - strandat 256.451 kb on - strandat 256.479 kb on + strandat 256.489 kb on - strandat 256.596 kb on - strand, within BACOVA_02488at 256.601 kb on - strand, within BACOVA_02488at 256.605 kb on - strand, within BACOVA_02488at 256.605 kb on - strand, within BACOVA_02488at 256.614 kb on - strand, within BACOVA_02488at 256.614 kb on - strand, within BACOVA_02488at 256.627 kb on - strand, within BACOVA_02488at 256.638 kb on - strand, within BACOVA_02488at 256.638 kb on - strand, within BACOVA_02488at 256.638 kb on - strand, within BACOVA_02488at 256.763 kb on - strand, within BACOVA_02488at 256.770 kb on - strand, within BACOVA_02488at 256.980 kb on - strand, within BACOVA_02488at 257.005 kb on + strand, within BACOVA_02488at 257.023 kb on - strand, within BACOVA_02488at 257.029 kb on - strand, within BACOVA_02488at 257.041 kb on - strand, within BACOVA_02488at 257.041 kb on - strand, within BACOVA_02488at 257.051 kb on - strand, within BACOVA_02488at 257.072 kb on - strandat 257.078 kb on + strandat 257.081 kb on - strandat 257.086 kb on - strandat 257.090 kb on - strandat 257.153 kb on + strandat 257.158 kb on - strandat 257.159 kb on + strandat 257.160 kb on - strandat 257.160 kb on - strandat 257.161 kb on + strandat 257.162 kb on - strandat 257.162 kb on - strandat 257.179 kb on - strandat 257.184 kb on + strandat 257.198 kb on - strandat 257.204 kb on + strandat 257.445 kb on - strand, within BACOVA_02489at 257.496 kb on + strand, within BACOVA_02489at 257.497 kb on - strand, within BACOVA_02489at 257.518 kb on - strand, within BACOVA_02489at 257.537 kb on + strand, within BACOVA_02489at 257.537 kb on + strand, within BACOVA_02489at 257.541 kb on + strand, within BACOVA_02489at 257.542 kb on - strand, within BACOVA_02489at 257.645 kb on + strand, within BACOVA_02489at 257.685 kb on - strand, within BACOVA_02489at 257.748 kb on + strand, within BACOVA_02489at 257.759 kb on + strand, within BACOVA_02489at 257.765 kb on + strand, within BACOVA_02489at 257.776 kb on - strand, within BACOVA_02489at 257.788 kb on - strand, within BACOVA_02489at 257.811 kb on + strand, within BACOVA_02489at 257.816 kb on - strand, within BACOVA_02489at 257.816 kb on - strand, within BACOVA_02489at 257.816 kb on - strand, within BACOVA_02489at 257.816 kb on - strand, within BACOVA_02489at 257.816 kb on - strand, within BACOVA_02489at 257.820 kb on - strand, within BACOVA_02489at 257.950 kb on - strand, within BACOVA_02489at 258.053 kb on + strand, within BACOVA_02489at 258.100 kb on - strand, within BACOVA_02489at 258.103 kb on - strand, within BACOVA_02489at 258.120 kb on + strandat 258.121 kb on - strandat 258.122 kb on + strandat 258.122 kb on + strandat 258.152 kb on - strandat 258.153 kb on + strandat 258.153 kb on + strandat 258.207 kb on - strandat 258.252 kb on - strandat 258.253 kb on + strandat 258.253 kb on + strandat 258.254 kb on - strandat 258.254 kb on - strandat 258.272 kb on + strandat 258.282 kb on + strandat 258.286 kb on - strandat 258.298 kb on - strandat 258.318 kb on + strandat 258.318 kb on + strandat 258.319 kb on - strandat 258.336 kb on + strandat 258.410 kb on - strandat 258.430 kb on - strandat 258.466 kb on - strandat 258.539 kb on - strandat 258.540 kb on + strandat 258.540 kb on + strandat 258.545 kb on - strandat 258.554 kb on - strandat 258.554 kb on - strandat 258.626 kb on - strandat 258.682 kb on + strand, within BACOVA_02490at 258.682 kb on + strand, within BACOVA_02490at 258.682 kb on + strand, within BACOVA_02490at 258.682 kb on + strand, within BACOVA_02490at 258.683 kb on - strand, within BACOVA_02490at 258.698 kb on - strand, within BACOVA_02490at 258.742 kb on + strand, within BACOVA_02490at 258.751 kb on + strand, within BACOVA_02490at 258.818 kb on + strand, within BACOVA_02490at 258.818 kb on + strand, within BACOVA_02490at 258.818 kb on + strand, within BACOVA_02490at 258.818 kb on + strand, within BACOVA_02490at 258.819 kb on - strand, within BACOVA_02490at 258.819 kb on - strand, within BACOVA_02490at 258.874 kb on - strand, within BACOVA_02490at 258.900 kb on + strand, within BACOVA_02490at 258.910 kb on - strand, within BACOVA_02490at 258.913 kb on - strand, within BACOVA_02490at 259.147 kb on + strand, within BACOVA_02490at 259.162 kb on + strand, within BACOVA_02490at 259.162 kb on + strand, within BACOVA_02490at 259.165 kb on + strand, within BACOVA_02490at 259.165 kb on + strand, within BACOVA_02490at 259.165 kb on + strand, within BACOVA_02490at 259.166 kb on - strand, within BACOVA_02490at 259.168 kb on + strand, within BACOVA_02490at 259.169 kb on - strand, within BACOVA_02490

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C)
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256,199 - BACOVA_02487 0.85 +1.7
256,200 + BACOVA_02487 0.85 -1.2
256,228 + BACOVA_02487 0.87 -1.7
256,246 + BACOVA_02487 0.88 -0.1
256,246 + BACOVA_02487 0.88 +0.4
256,258 - BACOVA_02487 0.89 -1.0
256,279 + -0.7
256,284 - -1.2
256,284 - +0.8
256,295 + -0.4
256,300 + +0.2
256,314 - +0.3
256,332 - -0.6
256,334 - +0.7
256,343 + -0.3
256,350 + +0.0
256,419 - +0.1
256,451 - +0.1
256,479 + +0.6
256,489 - +0.5
256,596 - BACOVA_02488 0.12 -0.3
256,601 - BACOVA_02488 0.13 -1.7
256,605 - BACOVA_02488 0.14 +0.1
256,605 - BACOVA_02488 0.14 -0.9
256,614 - BACOVA_02488 0.15 -1.0
256,614 - BACOVA_02488 0.15 +0.7
256,627 - BACOVA_02488 0.18 +0.3
256,638 - BACOVA_02488 0.19 +1.5
256,638 - BACOVA_02488 0.19 -1.2
256,638 - BACOVA_02488 0.19 -1.5
256,763 - BACOVA_02488 0.40 +1.0
256,770 - BACOVA_02488 0.41 -0.4
256,980 - BACOVA_02488 0.76 -1.5
257,005 + BACOVA_02488 0.80 -1.2
257,023 - BACOVA_02488 0.83 +0.3
257,029 - BACOVA_02488 0.84 -0.3
257,041 - BACOVA_02488 0.86 -1.3
257,041 - BACOVA_02488 0.86 -0.2
257,051 - BACOVA_02488 0.87 +2.4
257,072 - -0.5
257,078 + -1.2
257,081 - +0.2
257,086 - -0.2
257,090 - -0.9
257,153 + -0.1
257,158 - -0.2
257,159 + +0.8
257,160 - -0.5
257,160 - -1.2
257,161 + -1.7
257,162 - +0.5
257,162 - +0.3
257,179 - -0.2
257,184 + -0.7
257,198 - +0.1
257,204 + +1.4
257,445 - BACOVA_02489 0.25 +2.0
257,496 + BACOVA_02489 0.30 -0.7
257,497 - BACOVA_02489 0.30 -1.7
257,518 - BACOVA_02489 0.32 +0.0
257,537 + BACOVA_02489 0.34 +0.2
257,537 + BACOVA_02489 0.34 +0.1
257,541 + BACOVA_02489 0.35 -0.5
257,542 - BACOVA_02489 0.35 -0.6
257,645 + BACOVA_02489 0.45 -0.2
257,685 - BACOVA_02489 0.49 -0.9
257,748 + BACOVA_02489 0.55 +0.8
257,759 + BACOVA_02489 0.56 +0.1
257,765 + BACOVA_02489 0.56 +1.3
257,776 - BACOVA_02489 0.57 +1.6
257,788 - BACOVA_02489 0.59 -0.2
257,811 + BACOVA_02489 0.61 -1.7
257,816 - BACOVA_02489 0.61 +0.6
257,816 - BACOVA_02489 0.61 +0.3
257,816 - BACOVA_02489 0.61 +0.3
257,816 - BACOVA_02489 0.61 +2.2
257,816 - BACOVA_02489 0.61 -1.2
257,820 - BACOVA_02489 0.62 +0.8
257,950 - BACOVA_02489 0.74 -0.2
258,053 + BACOVA_02489 0.84 +0.3
258,100 - BACOVA_02489 0.89 -0.6
258,103 - BACOVA_02489 0.89 -2.0
258,120 + -0.5
258,121 - +0.8
258,122 + -0.8
258,122 + +2.1
258,152 - +0.4
258,153 + -2.5
258,153 + -1.5
258,207 - -1.5
258,252 - +0.4
258,253 + +0.8
258,253 + +2.4
258,254 - +0.3
258,254 - -1.1
258,272 + -1.6
258,282 + -0.3
258,286 - +0.6
258,298 - +0.8
258,318 + -1.0
258,318 + -1.0
258,319 - -0.2
258,336 + -1.2
258,410 - +0.4
258,430 - +0.0
258,466 - -0.4
258,539 - -0.1
258,540 + -1.4
258,540 + +0.4
258,545 - +0.5
258,554 - +0.1
258,554 - +1.5
258,626 - -1.5
258,682 + BACOVA_02490 0.11 +2.7
258,682 + BACOVA_02490 0.11 +0.0
258,682 + BACOVA_02490 0.11 +3.2
258,682 + BACOVA_02490 0.11 -0.6
258,683 - BACOVA_02490 0.11 -0.8
258,698 - BACOVA_02490 0.11 +0.9
258,742 + BACOVA_02490 0.13 +1.6
258,751 + BACOVA_02490 0.13 +0.4
258,818 + BACOVA_02490 0.15 +0.3
258,818 + BACOVA_02490 0.15 +0.2
258,818 + BACOVA_02490 0.15 -1.2
258,818 + BACOVA_02490 0.15 +1.3
258,819 - BACOVA_02490 0.15 -0.7
258,819 - BACOVA_02490 0.15 -1.2
258,874 - BACOVA_02490 0.16 -0.2
258,900 + BACOVA_02490 0.17 -0.3
258,910 - BACOVA_02490 0.18 -0.9
258,913 - BACOVA_02490 0.18 +1.6
259,147 + BACOVA_02490 0.24 +0.8
259,162 + BACOVA_02490 0.25 -0.6
259,162 + BACOVA_02490 0.25 -1.5
259,165 + BACOVA_02490 0.25 -0.2
259,165 + BACOVA_02490 0.25 -1.3
259,165 + BACOVA_02490 0.25 -2.7
259,166 - BACOVA_02490 0.25 -0.3
259,168 + BACOVA_02490 0.25 -0.4
259,169 - BACOVA_02490 0.25 +3.2

Or see this region's nucleotide sequence