Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02280 and BACOVA_02282 are separated by 13 nucleotides BACOVA_02282 and BACOVA_02281 overlap by 47 nucleotides BACOVA_02281 and BACOVA_02283 are separated by 17 nucleotides BACOVA_02283 and BACOVA_02284 are separated by 11 nucleotides BACOVA_02284 and BACOVA_02285 are separated by 167 nucleotides
BACOVA_02280: BACOVA_02280 - hypothetical protein, at 54,143 to 54,571
_02280
BACOVA_02282: BACOVA_02282 - hypothetical protein, at 54,585 to 54,701
_02282
BACOVA_02281: BACOVA_02281 - hypothetical protein, at 54,655 to 55,011
_02281
BACOVA_02283: BACOVA_02283 - hypothetical protein, at 55,029 to 55,319
_02283
BACOVA_02284: BACOVA_02284 - hypothetical protein, at 55,331 to 56,683
_02284
BACOVA_02285: BACOVA_02285 - hypothetical protein, at 56,851 to 57,687
_02285
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.569 kb on + strand at 54.569 kb on + strand at 54.569 kb on + strand at 54.569 kb on + strand at 54.570 kb on - strand at 54.570 kb on - strand at 54.572 kb on + strand at 54.573 kb on - strand at 54.573 kb on - strand at 54.576 kb on + strand at 54.576 kb on + strand at 54.576 kb on + strand at 54.577 kb on - strand at 54.577 kb on - strand at 54.577 kb on - strand at 54.577 kb on - strand at 54.579 kb on - strand at 54.587 kb on - strand at 54.665 kb on + strand at 54.799 kb on - strand, within BACOVA_02281 at 54.964 kb on - strand, within BACOVA_02281 at 55.009 kb on + strand at 55.216 kb on + strand, within BACOVA_02283 at 55.216 kb on + strand, within BACOVA_02283 at 55.236 kb on + strand, within BACOVA_02283 at 55.237 kb on - strand, within BACOVA_02283 at 55.285 kb on + strand, within BACOVA_02283 at 55.293 kb on + strand at 55.311 kb on - strand at 55.435 kb on - strand at 55.659 kb on + strand, within BACOVA_02284 at 55.659 kb on + strand, within BACOVA_02284 at 55.660 kb on - strand, within BACOVA_02284 at 55.712 kb on + strand, within BACOVA_02284 at 55.785 kb on + strand, within BACOVA_02284 at 55.786 kb on - strand, within BACOVA_02284 at 55.786 kb on - strand, within BACOVA_02284 at 55.899 kb on - strand, within BACOVA_02284 at 55.947 kb on + strand, within BACOVA_02284 at 55.957 kb on + strand, within BACOVA_02284 at 55.982 kb on + strand, within BACOVA_02284 at 56.109 kb on + strand, within BACOVA_02284 at 56.110 kb on - strand, within BACOVA_02284 at 56.110 kb on - strand, within BACOVA_02284 at 56.231 kb on + strand, within BACOVA_02284 at 56.291 kb on + strand, within BACOVA_02284 at 56.310 kb on - strand, within BACOVA_02284 at 56.388 kb on - strand, within BACOVA_02284 at 56.496 kb on - strand, within BACOVA_02284 at 56.499 kb on - strand, within BACOVA_02284 at 56.673 kb on + strand at 56.676 kb on + strand at 56.748 kb on - strand at 56.974 kb on + strand, within BACOVA_02285 at 56.975 kb on - strand, within BACOVA_02285 at 56.987 kb on - strand, within BACOVA_02285 at 57.020 kb on - strand, within BACOVA_02285 at 57.020 kb on - strand, within BACOVA_02285 at 57.064 kb on - strand, within BACOVA_02285 at 57.077 kb on - strand, within BACOVA_02285 at 57.077 kb on - strand, within BACOVA_02285 at 57.273 kb on - strand, within BACOVA_02285 at 57.293 kb on - strand, within BACOVA_02285 at 57.325 kb on + strand, within BACOVA_02285 at 57.326 kb on - strand, within BACOVA_02285 at 57.326 kb on - strand, within BACOVA_02285 at 57.332 kb on - strand, within BACOVA_02285 at 57.584 kb on - strand, within BACOVA_02285
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C) remove 54,569 + +0.8 54,569 + +0.8 54,569 + +0.9 54,569 + +0.4 54,570 - -3.0 54,570 - +0.4 54,572 + +1.0 54,573 - +0.8 54,573 - +0.7 54,576 + +1.2 54,576 + -0.2 54,576 + -0.6 54,577 - -2.3 54,577 - +0.3 54,577 - +1.3 54,577 - +0.5 54,579 - +1.2 54,587 - -0.3 54,665 + +0.0 54,799 - BACOVA_02281 0.40 -1.3 54,964 - BACOVA_02281 0.87 -0.7 55,009 + -0.2 55,216 + BACOVA_02283 0.64 -1.0 55,216 + BACOVA_02283 0.64 -1.7 55,236 + BACOVA_02283 0.71 +0.8 55,237 - BACOVA_02283 0.71 +1.0 55,285 + BACOVA_02283 0.88 +0.7 55,293 + -2.2 55,311 - +0.7 55,435 - +0.4 55,659 + BACOVA_02284 0.24 +0.7 55,659 + BACOVA_02284 0.24 -0.7 55,660 - BACOVA_02284 0.24 -1.2 55,712 + BACOVA_02284 0.28 -1.2 55,785 + BACOVA_02284 0.34 -0.2 55,786 - BACOVA_02284 0.34 +1.7 55,786 - BACOVA_02284 0.34 -0.7 55,899 - BACOVA_02284 0.42 +0.6 55,947 + BACOVA_02284 0.46 +0.4 55,957 + BACOVA_02284 0.46 +0.5 55,982 + BACOVA_02284 0.48 -1.7 56,109 + BACOVA_02284 0.58 -1.7 56,110 - BACOVA_02284 0.58 +1.2 56,110 - BACOVA_02284 0.58 -1.4 56,231 + BACOVA_02284 0.67 -0.2 56,291 + BACOVA_02284 0.71 +0.8 56,310 - BACOVA_02284 0.72 -0.5 56,388 - BACOVA_02284 0.78 -0.2 56,496 - BACOVA_02284 0.86 +1.2 56,499 - BACOVA_02284 0.86 +1.4 56,673 + +0.6 56,676 + -1.5 56,748 - +0.3 56,974 + BACOVA_02285 0.15 -2.0 56,975 - BACOVA_02285 0.15 +0.1 56,987 - BACOVA_02285 0.16 +1.3 57,020 - BACOVA_02285 0.20 +0.2 57,020 - BACOVA_02285 0.20 +0.3 57,064 - BACOVA_02285 0.25 +0.3 57,077 - BACOVA_02285 0.27 +0.1 57,077 - BACOVA_02285 0.27 +0.4 57,273 - BACOVA_02285 0.50 -1.0 57,293 - BACOVA_02285 0.53 +1.5 57,325 + BACOVA_02285 0.57 -1.3 57,326 - BACOVA_02285 0.57 -1.5 57,326 - BACOVA_02285 0.57 +1.1 57,332 - BACOVA_02285 0.57 -0.0 57,584 - BACOVA_02285 0.88 +2.1
Or see this region's nucleotide sequence