Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01470

Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01468 and BACOVA_01469 are separated by 169 nucleotidesBACOVA_01469 and BACOVA_01470 are separated by 44 nucleotidesBACOVA_01470 and BACOVA_01471 are separated by 4 nucleotidesBACOVA_01471 and BACOVA_01472 are separated by 3 nucleotidesBACOVA_01472 and BACOVA_01473 are separated by 17 nucleotides BACOVA_01468: BACOVA_01468 - nicotinate phosphoribosyltransferase, at 125,730 to 126,905 _01468 BACOVA_01469: BACOVA_01469 - hypothetical protein, at 127,075 to 127,605 _01469 BACOVA_01470: BACOVA_01470 - hypothetical protein, at 127,650 to 128,375 _01470 BACOVA_01471: BACOVA_01471 - transcriptional regulator, TetR family, at 128,380 to 128,985 _01471 BACOVA_01472: BACOVA_01472 - hypothetical protein, at 128,989 to 129,105 _01472 BACOVA_01473: BACOVA_01473 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 129,123 to 129,902 _01473 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 126.783 kb on - strand, within BACOVA_01468at 126.785 kb on - strand, within BACOVA_01468at 126.830 kb on - strandat 126.848 kb on - strandat 126.853 kb on + strandat 126.863 kb on + strandat 126.869 kb on + strandat 126.870 kb on - strandat 126.886 kb on - strandat 126.888 kb on + strandat 126.897 kb on - strandat 126.922 kb on - strandat 126.927 kb on - strandat 126.928 kb on + strandat 126.960 kb on - strandat 126.960 kb on - strandat 126.969 kb on + strandat 126.969 kb on + strandat 126.969 kb on + strandat 126.970 kb on - strandat 126.970 kb on - strandat 126.976 kb on + strandat 126.983 kb on + strandat 127.025 kb on + strandat 127.026 kb on - strandat 127.027 kb on + strandat 127.027 kb on + strandat 127.027 kb on + strandat 127.028 kb on - strandat 127.028 kb on - strandat 127.028 kb on - strandat 127.029 kb on + strandat 127.030 kb on - strandat 127.056 kb on - strandat 127.062 kb on + strandat 127.066 kb on - strandat 127.068 kb on - strandat 127.071 kb on + strandat 127.071 kb on + strandat 127.072 kb on - strandat 127.072 kb on - strandat 127.072 kb on - strandat 127.072 kb on - strandat 127.080 kb on - strandat 127.102 kb on - strandat 127.129 kb on - strand, within BACOVA_01469at 127.230 kb on + strand, within BACOVA_01469at 127.259 kb on + strand, within BACOVA_01469at 127.345 kb on + strand, within BACOVA_01469at 127.345 kb on + strand, within BACOVA_01469at 127.345 kb on + strand, within BACOVA_01469at 127.346 kb on - strand, within BACOVA_01469at 127.349 kb on + strand, within BACOVA_01469at 127.350 kb on - strand, within BACOVA_01469at 127.367 kb on + strand, within BACOVA_01469at 127.475 kb on + strand, within BACOVA_01469at 127.476 kb on - strand, within BACOVA_01469at 127.476 kb on - strand, within BACOVA_01469at 127.510 kb on - strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.515 kb on + strand, within BACOVA_01469at 127.515 kb on + strand, within BACOVA_01469at 127.515 kb on + strand, within BACOVA_01469at 127.516 kb on - strand, within BACOVA_01469at 127.593 kb on + strandat 127.605 kb on + strandat 127.605 kb on + strandat 127.632 kb on + strandat 127.645 kb on + strandat 127.651 kb on + strandat 127.652 kb on - strandat 127.652 kb on - strandat 127.660 kb on + strandat 127.671 kb on - strandat 127.676 kb on + strandat 127.719 kb on - strandat 127.730 kb on + strand, within BACOVA_01470at 127.730 kb on + strand, within BACOVA_01470at 127.730 kb on + strand, within BACOVA_01470at 127.770 kb on - strand, within BACOVA_01470at 127.852 kb on + strand, within BACOVA_01470at 127.853 kb on - strand, within BACOVA_01470at 127.988 kb on + strand, within BACOVA_01470at 128.036 kb on - strand, within BACOVA_01470at 128.036 kb on - strand, within BACOVA_01470at 128.036 kb on - strand, within BACOVA_01470at 128.037 kb on + strand, within BACOVA_01470at 128.038 kb on - strand, within BACOVA_01470at 128.038 kb on - strand, within BACOVA_01470at 128.050 kb on + strand, within BACOVA_01470at 128.150 kb on - strand, within BACOVA_01470at 128.165 kb on - strand, within BACOVA_01470at 128.178 kb on - strand, within BACOVA_01470at 128.275 kb on - strand, within BACOVA_01470at 128.279 kb on + strand, within BACOVA_01470at 128.288 kb on + strand, within BACOVA_01470at 128.301 kb on + strand, within BACOVA_01470at 128.325 kb on - strandat 128.358 kb on + strandat 128.382 kb on - strandat 128.474 kb on + strand, within BACOVA_01471at 128.507 kb on + strand, within BACOVA_01471at 128.640 kb on + strand, within BACOVA_01471at 128.683 kb on - strand, within BACOVA_01471at 128.683 kb on - strand, within BACOVA_01471at 128.685 kb on - strand, within BACOVA_01471at 128.783 kb on + strand, within BACOVA_01471at 128.844 kb on + strand, within BACOVA_01471at 128.844 kb on + strand, within BACOVA_01471at 128.844 kb on + strand, within BACOVA_01471at 128.876 kb on - strand, within BACOVA_01471at 128.967 kb on + strandat 128.967 kb on + strandat 128.968 kb on - strandat 128.971 kb on - strandat 128.971 kb on - strandat 128.986 kb on - strandat 129.067 kb on - strand, within BACOVA_01472at 129.083 kb on + strand, within BACOVA_01472at 129.083 kb on + strand, within BACOVA_01472at 129.083 kb on + strand, within BACOVA_01472at 129.084 kb on - strand, within BACOVA_01472at 129.104 kb on - strandat 129.106 kb on + strandat 129.107 kb on - strandat 129.107 kb on - strandat 129.107 kb on - strandat 129.107 kb on - strandat 129.227 kb on + strand, within BACOVA_01473at 129.227 kb on + strand, within BACOVA_01473at 129.284 kb on + strand, within BACOVA_01473at 129.285 kb on - strand, within BACOVA_01473at 129.285 kb on - strand, within BACOVA_01473at 129.287 kb on + strand, within BACOVA_01473at 129.291 kb on + strand, within BACOVA_01473at 129.291 kb on + strand, within BACOVA_01473at 129.292 kb on - strand, within BACOVA_01473at 129.327 kb on - strand, within BACOVA_01473at 129.331 kb on - strand, within BACOVA_01473

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C)
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126,783 - BACOVA_01468 0.90 -0.0
126,785 - BACOVA_01468 0.90 -0.1
126,830 - -0.1
126,848 - +0.7
126,853 + +0.8
126,863 + -0.3
126,869 + +0.6
126,870 - -0.3
126,886 - -0.1
126,888 + +0.4
126,897 - +0.0
126,922 - -1.0
126,927 - -0.8
126,928 + -1.4
126,960 - -0.3
126,960 - +0.3
126,969 + +0.3
126,969 + -0.1
126,969 + +0.5
126,970 - -0.5
126,970 - +0.5
126,976 + +1.1
126,983 + +0.5
127,025 + +0.1
127,026 - +0.3
127,027 + +1.1
127,027 + -1.5
127,027 + -0.7
127,028 - +0.1
127,028 - +0.5
127,028 - +0.6
127,029 + -0.3
127,030 - +2.0
127,056 - +1.0
127,062 + -2.6
127,066 - -0.1
127,068 - -0.8
127,071 + -0.4
127,071 + +0.0
127,072 - +1.9
127,072 - -0.7
127,072 - +1.3
127,072 - +1.9
127,080 - +0.3
127,102 - -0.7
127,129 - BACOVA_01469 0.10 +2.0
127,230 + BACOVA_01469 0.29 +1.0
127,259 + BACOVA_01469 0.35 -1.1
127,345 + BACOVA_01469 0.51 -0.1
127,345 + BACOVA_01469 0.51 -0.7
127,345 + BACOVA_01469 0.51 -1.7
127,346 - BACOVA_01469 0.51 -1.1
127,349 + BACOVA_01469 0.52 -2.1
127,350 - BACOVA_01469 0.52 -0.4
127,367 + BACOVA_01469 0.55 -0.3
127,475 + BACOVA_01469 0.75 -0.9
127,476 - BACOVA_01469 0.76 +0.3
127,476 - BACOVA_01469 0.76 +0.7
127,510 - BACOVA_01469 0.82 -1.6
127,511 + BACOVA_01469 0.82 -1.1
127,511 + BACOVA_01469 0.82 +0.6
127,511 + BACOVA_01469 0.82 +1.1
127,511 + BACOVA_01469 0.82 -0.9
127,511 + BACOVA_01469 0.82 +0.4
127,511 + BACOVA_01469 0.82 +2.1
127,512 - BACOVA_01469 0.82 +0.1
127,512 - BACOVA_01469 0.82 -0.6
127,512 - BACOVA_01469 0.82 +0.8
127,512 - BACOVA_01469 0.82 -0.2
127,515 + BACOVA_01469 0.83 -0.4
127,515 + BACOVA_01469 0.83 -0.1
127,515 + BACOVA_01469 0.83 -0.3
127,516 - BACOVA_01469 0.83 +0.8
127,593 + +0.6
127,605 + -0.3
127,605 + +1.4
127,632 + +0.7
127,645 + +0.3
127,651 + -1.3
127,652 - -1.4
127,652 - +0.9
127,660 + +0.1
127,671 - +0.6
127,676 + +0.4
127,719 - +0.2
127,730 + BACOVA_01470 0.11 -0.1
127,730 + BACOVA_01470 0.11 +0.4
127,730 + BACOVA_01470 0.11 -0.5
127,770 - BACOVA_01470 0.17 -1.1
127,852 + BACOVA_01470 0.28 +0.5
127,853 - BACOVA_01470 0.28 -0.6
127,988 + BACOVA_01470 0.47 -0.9
128,036 - BACOVA_01470 0.53 -1.1
128,036 - BACOVA_01470 0.53 +0.1
128,036 - BACOVA_01470 0.53 -0.6
128,037 + BACOVA_01470 0.53 +0.5
128,038 - BACOVA_01470 0.53 -0.5
128,038 - BACOVA_01470 0.53 +1.1
128,050 + BACOVA_01470 0.55 +1.9
128,150 - BACOVA_01470 0.69 +0.1
128,165 - BACOVA_01470 0.71 +1.2
128,178 - BACOVA_01470 0.73 -0.7
128,275 - BACOVA_01470 0.86 -1.1
128,279 + BACOVA_01470 0.87 +0.3
128,288 + BACOVA_01470 0.88 +1.7
128,301 + BACOVA_01470 0.90 +0.2
128,325 - -1.0
128,358 + -0.4
128,382 - +0.2
128,474 + BACOVA_01471 0.16 -2.1
128,507 + BACOVA_01471 0.21 -0.3
128,640 + BACOVA_01471 0.43 +0.4
128,683 - BACOVA_01471 0.50 +5.2
128,683 - BACOVA_01471 0.50 +0.3
128,685 - BACOVA_01471 0.50 -0.1
128,783 + BACOVA_01471 0.67 -0.6
128,844 + BACOVA_01471 0.77 -0.0
128,844 + BACOVA_01471 0.77 +0.4
128,844 + BACOVA_01471 0.77 -0.2
128,876 - BACOVA_01471 0.82 +0.6
128,967 + +2.2
128,967 + +0.3
128,968 - -0.2
128,971 - -0.4
128,971 - -0.6
128,986 - +1.3
129,067 - BACOVA_01472 0.67 +0.3
129,083 + BACOVA_01472 0.80 +0.9
129,083 + BACOVA_01472 0.80 +0.2
129,083 + BACOVA_01472 0.80 +1.1
129,084 - BACOVA_01472 0.81 -0.9
129,104 - -1.1
129,106 + +0.7
129,107 - +0.1
129,107 - +0.3
129,107 - -1.8
129,107 - +1.5
129,227 + BACOVA_01473 0.13 +0.2
129,227 + BACOVA_01473 0.13 -2.0
129,284 + BACOVA_01473 0.21 -0.8
129,285 - BACOVA_01473 0.21 -1.3
129,285 - BACOVA_01473 0.21 -1.8
129,287 + BACOVA_01473 0.21 -0.4
129,291 + BACOVA_01473 0.22 +1.7
129,291 + BACOVA_01473 0.22 +0.4
129,292 - BACOVA_01473 0.22 -0.2
129,327 - BACOVA_01473 0.26 +0.1
129,331 - BACOVA_01473 0.27 +0.1

Or see this region's nucleotide sequence