Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00905

Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00904 and BACOVA_00905 are separated by 115 nucleotidesBACOVA_00905 and BACOVA_00906 are separated by 243 nucleotides BACOVA_00904: BACOVA_00904 - DEAD/DEAH box helicase, at 35,278 to 37,212 _00904 BACOVA_00905: BACOVA_00905 - tyrosine phosphatase family, at 37,328 to 38,317 _00905 BACOVA_00906: BACOVA_00906 - hypothetical protein, at 38,561 to 40,027 _00906 Position (kb) 37 38 39Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 36.360 kb on + strand, within BACOVA_00904at 36.427 kb on + strand, within BACOVA_00904at 36.463 kb on - strand, within BACOVA_00904at 36.477 kb on + strand, within BACOVA_00904at 36.482 kb on + strand, within BACOVA_00904at 36.507 kb on + strand, within BACOVA_00904at 36.508 kb on - strand, within BACOVA_00904at 36.548 kb on + strand, within BACOVA_00904at 36.692 kb on - strand, within BACOVA_00904at 36.777 kb on + strand, within BACOVA_00904at 36.778 kb on - strand, within BACOVA_00904at 36.781 kb on + strand, within BACOVA_00904at 36.781 kb on + strand, within BACOVA_00904at 36.781 kb on + strand, within BACOVA_00904at 36.782 kb on - strand, within BACOVA_00904at 36.788 kb on - strand, within BACOVA_00904at 36.828 kb on + strand, within BACOVA_00904at 36.833 kb on - strand, within BACOVA_00904at 36.833 kb on - strand, within BACOVA_00904at 36.866 kb on - strand, within BACOVA_00904at 36.866 kb on - strand, within BACOVA_00904at 36.866 kb on - strand, within BACOVA_00904at 36.866 kb on - strand, within BACOVA_00904at 36.893 kb on + strand, within BACOVA_00904at 36.893 kb on + strand, within BACOVA_00904at 36.893 kb on + strand, within BACOVA_00904at 36.893 kb on + strand, within BACOVA_00904at 36.895 kb on + strand, within BACOVA_00904at 36.895 kb on + strand, within BACOVA_00904at 36.895 kb on + strand, within BACOVA_00904at 36.896 kb on - strand, within BACOVA_00904at 36.899 kb on - strand, within BACOVA_00904at 36.902 kb on - strand, within BACOVA_00904at 36.904 kb on + strand, within BACOVA_00904at 36.911 kb on - strand, within BACOVA_00904at 36.923 kb on + strand, within BACOVA_00904at 36.952 kb on + strand, within BACOVA_00904at 37.085 kb on - strandat 37.085 kb on - strandat 37.085 kb on - strandat 37.085 kb on - strandat 37.103 kb on - strandat 37.174 kb on + strandat 37.214 kb on - strandat 37.224 kb on - strandat 37.279 kb on + strandat 37.283 kb on - strandat 37.307 kb on + strandat 37.319 kb on + strandat 37.319 kb on + strandat 37.329 kb on + strandat 37.330 kb on - strandat 37.330 kb on - strandat 37.344 kb on - strandat 37.401 kb on + strandat 37.402 kb on - strandat 37.410 kb on - strandat 37.419 kb on + strandat 37.474 kb on - strand, within BACOVA_00905at 37.483 kb on + strand, within BACOVA_00905at 37.484 kb on - strand, within BACOVA_00905at 37.513 kb on + strand, within BACOVA_00905at 37.513 kb on + strand, within BACOVA_00905at 37.514 kb on - strand, within BACOVA_00905at 37.514 kb on - strand, within BACOVA_00905at 37.514 kb on - strand, within BACOVA_00905at 37.515 kb on + strand, within BACOVA_00905at 37.515 kb on + strand, within BACOVA_00905at 37.516 kb on - strand, within BACOVA_00905at 37.521 kb on + strand, within BACOVA_00905at 37.522 kb on - strand, within BACOVA_00905at 37.540 kb on + strand, within BACOVA_00905at 37.543 kb on + strand, within BACOVA_00905at 37.543 kb on + strand, within BACOVA_00905at 37.544 kb on - strand, within BACOVA_00905at 37.555 kb on + strand, within BACOVA_00905at 37.566 kb on + strand, within BACOVA_00905at 37.576 kb on + strand, within BACOVA_00905at 37.614 kb on - strand, within BACOVA_00905at 37.651 kb on + strand, within BACOVA_00905at 37.651 kb on + strand, within BACOVA_00905at 37.652 kb on - strand, within BACOVA_00905at 37.722 kb on + strand, within BACOVA_00905at 37.723 kb on - strand, within BACOVA_00905at 37.728 kb on - strand, within BACOVA_00905at 37.734 kb on - strand, within BACOVA_00905at 37.754 kb on + strand, within BACOVA_00905at 37.754 kb on + strand, within BACOVA_00905at 37.764 kb on + strand, within BACOVA_00905at 37.769 kb on - strand, within BACOVA_00905at 37.781 kb on + strand, within BACOVA_00905at 37.840 kb on + strand, within BACOVA_00905at 37.840 kb on + strand, within BACOVA_00905at 37.840 kb on + strand, within BACOVA_00905at 37.844 kb on + strand, within BACOVA_00905at 37.844 kb on + strand, within BACOVA_00905at 37.844 kb on + strand, within BACOVA_00905at 37.844 kb on + strand, within BACOVA_00905at 37.844 kb on + strand, within BACOVA_00905at 37.845 kb on - strand, within BACOVA_00905at 37.845 kb on - strand, within BACOVA_00905at 37.845 kb on - strand, within BACOVA_00905at 37.845 kb on - strand, within BACOVA_00905at 37.878 kb on + strand, within BACOVA_00905at 37.904 kb on + strand, within BACOVA_00905at 37.904 kb on + strand, within BACOVA_00905at 37.905 kb on - strand, within BACOVA_00905at 37.905 kb on - strand, within BACOVA_00905at 37.910 kb on + strand, within BACOVA_00905at 37.910 kb on + strand, within BACOVA_00905at 37.911 kb on - strand, within BACOVA_00905at 37.936 kb on + strand, within BACOVA_00905at 37.937 kb on - strand, within BACOVA_00905at 37.986 kb on + strand, within BACOVA_00905at 37.986 kb on + strand, within BACOVA_00905at 37.989 kb on - strand, within BACOVA_00905at 38.032 kb on - strand, within BACOVA_00905at 38.071 kb on + strand, within BACOVA_00905at 38.072 kb on - strand, within BACOVA_00905at 38.072 kb on - strand, within BACOVA_00905at 38.108 kb on - strand, within BACOVA_00905at 38.110 kb on + strand, within BACOVA_00905at 38.114 kb on + strand, within BACOVA_00905at 38.124 kb on + strand, within BACOVA_00905at 38.124 kb on + strand, within BACOVA_00905at 38.125 kb on - strand, within BACOVA_00905at 38.128 kb on - strand, within BACOVA_00905at 38.131 kb on - strand, within BACOVA_00905at 38.154 kb on - strand, within BACOVA_00905at 38.167 kb on + strand, within BACOVA_00905at 38.168 kb on - strand, within BACOVA_00905at 38.212 kb on + strand, within BACOVA_00905at 38.235 kb on + strandat 38.256 kb on - strandat 38.281 kb on + strandat 38.285 kb on - strandat 38.294 kb on + strandat 38.295 kb on - strandat 38.321 kb on + strandat 38.322 kb on - strandat 38.323 kb on + strandat 38.323 kb on + strandat 38.324 kb on - strandat 38.324 kb on - strandat 38.324 kb on - strandat 38.357 kb on + strandat 38.378 kb on + strandat 38.390 kb on - strandat 38.391 kb on + strandat 38.395 kb on + strandat 38.451 kb on + strandat 38.466 kb on - strandat 38.466 kb on - strandat 38.486 kb on - strandat 38.547 kb on - strandat 38.560 kb on - strandat 38.562 kb on + strandat 38.563 kb on - strandat 38.630 kb on - strandat 38.630 kb on - strandat 38.696 kb on - strandat 38.724 kb on - strand, within BACOVA_00906at 38.733 kb on - strand, within BACOVA_00906at 38.767 kb on + strand, within BACOVA_00906at 38.767 kb on + strand, within BACOVA_00906at 38.785 kb on + strand, within BACOVA_00906at 38.785 kb on + strand, within BACOVA_00906at 38.799 kb on - strand, within BACOVA_00906at 38.859 kb on + strand, within BACOVA_00906at 38.905 kb on + strand, within BACOVA_00906at 38.917 kb on + strand, within BACOVA_00906at 38.918 kb on - strand, within BACOVA_00906at 38.918 kb on - strand, within BACOVA_00906at 38.922 kb on - strand, within BACOVA_00906at 38.922 kb on - strand, within BACOVA_00906at 38.922 kb on - strand, within BACOVA_00906at 38.935 kb on - strand, within BACOVA_00906at 38.957 kb on + strand, within BACOVA_00906at 39.010 kb on + strand, within BACOVA_00906at 39.025 kb on - strand, within BACOVA_00906at 39.028 kb on + strand, within BACOVA_00906at 39.028 kb on + strand, within BACOVA_00906at 39.028 kb on + strand, within BACOVA_00906at 39.029 kb on - strand, within BACOVA_00906at 39.029 kb on - strand, within BACOVA_00906at 39.039 kb on + strand, within BACOVA_00906at 39.039 kb on + strand, within BACOVA_00906at 39.039 kb on + strand, within BACOVA_00906at 39.069 kb on - strand, within BACOVA_00906at 39.088 kb on + strand, within BACOVA_00906at 39.089 kb on - strand, within BACOVA_00906at 39.172 kb on + strand, within BACOVA_00906at 39.199 kb on + strand, within BACOVA_00906at 39.199 kb on + strand, within BACOVA_00906at 39.234 kb on - strand, within BACOVA_00906at 39.276 kb on - strand, within BACOVA_00906at 39.280 kb on + strand, within BACOVA_00906

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C)
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36,360 + BACOVA_00904 0.56 +1.6
36,427 + BACOVA_00904 0.59 +1.9
36,463 - BACOVA_00904 0.61 -0.3
36,477 + BACOVA_00904 0.62 +0.9
36,482 + BACOVA_00904 0.62 -0.4
36,507 + BACOVA_00904 0.64 -0.2
36,508 - BACOVA_00904 0.64 +0.4
36,548 + BACOVA_00904 0.66 -1.0
36,692 - BACOVA_00904 0.73 -0.6
36,777 + BACOVA_00904 0.77 +0.2
36,778 - BACOVA_00904 0.78 +0.9
36,781 + BACOVA_00904 0.78 -0.4
36,781 + BACOVA_00904 0.78 +1.1
36,781 + BACOVA_00904 0.78 -0.9
36,782 - BACOVA_00904 0.78 -0.4
36,788 - BACOVA_00904 0.78 +0.1
36,828 + BACOVA_00904 0.80 -2.2
36,833 - BACOVA_00904 0.80 -0.9
36,833 - BACOVA_00904 0.80 -1.9
36,866 - BACOVA_00904 0.82 +0.5
36,866 - BACOVA_00904 0.82 -0.4
36,866 - BACOVA_00904 0.82 +0.5
36,866 - BACOVA_00904 0.82 +0.1
36,893 + BACOVA_00904 0.83 +0.2
36,893 + BACOVA_00904 0.83 -1.5
36,893 + BACOVA_00904 0.83 -0.4
36,893 + BACOVA_00904 0.83 +2.1
36,895 + BACOVA_00904 0.84 -0.6
36,895 + BACOVA_00904 0.84 -0.8
36,895 + BACOVA_00904 0.84 +2.7
36,896 - BACOVA_00904 0.84 +0.9
36,899 - BACOVA_00904 0.84 -0.9
36,902 - BACOVA_00904 0.84 +0.9
36,904 + BACOVA_00904 0.84 +0.6
36,911 - BACOVA_00904 0.84 -2.1
36,923 + BACOVA_00904 0.85 -0.6
36,952 + BACOVA_00904 0.87 +0.1
37,085 - -0.9
37,085 - -0.3
37,085 - +0.1
37,085 - -0.5
37,103 - +0.2
37,174 + -1.1
37,214 - +1.3
37,224 - +0.9
37,279 + -1.2
37,283 - +0.2
37,307 + +1.4
37,319 + +0.2
37,319 + +0.1
37,329 + +0.3
37,330 - -0.1
37,330 - -0.5
37,344 - +0.4
37,401 + -0.6
37,402 - +1.3
37,410 - -1.3
37,419 + -0.8
37,474 - BACOVA_00905 0.15 +1.3
37,483 + BACOVA_00905 0.16 -1.3
37,484 - BACOVA_00905 0.16 +0.7
37,513 + BACOVA_00905 0.19 -0.5
37,513 + BACOVA_00905 0.19 -2.1
37,514 - BACOVA_00905 0.19 +1.1
37,514 - BACOVA_00905 0.19 -0.6
37,514 - BACOVA_00905 0.19 +1.2
37,515 + BACOVA_00905 0.19 -0.8
37,515 + BACOVA_00905 0.19 +0.4
37,516 - BACOVA_00905 0.19 -0.0
37,521 + BACOVA_00905 0.19 -0.1
37,522 - BACOVA_00905 0.20 -0.1
37,540 + BACOVA_00905 0.21 -0.6
37,543 + BACOVA_00905 0.22 -0.6
37,543 + BACOVA_00905 0.22 -0.5
37,544 - BACOVA_00905 0.22 +0.7
37,555 + BACOVA_00905 0.23 -0.1
37,566 + BACOVA_00905 0.24 -0.1
37,576 + BACOVA_00905 0.25 -0.9
37,614 - BACOVA_00905 0.29 -0.6
37,651 + BACOVA_00905 0.33 +0.3
37,651 + BACOVA_00905 0.33 -0.3
37,652 - BACOVA_00905 0.33 -0.2
37,722 + BACOVA_00905 0.40 +0.3
37,723 - BACOVA_00905 0.40 -4.4
37,728 - BACOVA_00905 0.40 -1.4
37,734 - BACOVA_00905 0.41 +0.6
37,754 + BACOVA_00905 0.43 -0.2
37,754 + BACOVA_00905 0.43 +0.4
37,764 + BACOVA_00905 0.44 +0.9
37,769 - BACOVA_00905 0.45 -0.4
37,781 + BACOVA_00905 0.46 -0.1
37,840 + BACOVA_00905 0.52 +0.1
37,840 + BACOVA_00905 0.52 -0.6
37,840 + BACOVA_00905 0.52 -0.1
37,844 + BACOVA_00905 0.52 -1.8
37,844 + BACOVA_00905 0.52 +0.4
37,844 + BACOVA_00905 0.52 -1.1
37,844 + BACOVA_00905 0.52 -0.9
37,844 + BACOVA_00905 0.52 -0.3
37,845 - BACOVA_00905 0.52 -0.1
37,845 - BACOVA_00905 0.52 +0.1
37,845 - BACOVA_00905 0.52 -2.1
37,845 - BACOVA_00905 0.52 +1.1
37,878 + BACOVA_00905 0.56 +0.4
37,904 + BACOVA_00905 0.58 +0.4
37,904 + BACOVA_00905 0.58 +0.5
37,905 - BACOVA_00905 0.58 -1.6
37,905 - BACOVA_00905 0.58 -0.6
37,910 + BACOVA_00905 0.59 -0.2
37,910 + BACOVA_00905 0.59 -0.1
37,911 - BACOVA_00905 0.59 -0.2
37,936 + BACOVA_00905 0.61 -0.1
37,937 - BACOVA_00905 0.62 -0.2
37,986 + BACOVA_00905 0.66 +1.9
37,986 + BACOVA_00905 0.66 -2.1
37,989 - BACOVA_00905 0.67 -1.1
38,032 - BACOVA_00905 0.71 -0.1
38,071 + BACOVA_00905 0.75 -0.2
38,072 - BACOVA_00905 0.75 +0.2
38,072 - BACOVA_00905 0.75 +0.4
38,108 - BACOVA_00905 0.79 -0.6
38,110 + BACOVA_00905 0.79 -2.1
38,114 + BACOVA_00905 0.79 -1.1
38,124 + BACOVA_00905 0.80 +0.1
38,124 + BACOVA_00905 0.80 -1.4
38,125 - BACOVA_00905 0.81 +0.1
38,128 - BACOVA_00905 0.81 +0.3
38,131 - BACOVA_00905 0.81 -0.1
38,154 - BACOVA_00905 0.83 -0.6
38,167 + BACOVA_00905 0.85 -1.5
38,168 - BACOVA_00905 0.85 -0.4
38,212 + BACOVA_00905 0.89 +0.6
38,235 + +0.4
38,256 - -0.2
38,281 + -0.3
38,285 - +1.5
38,294 + -1.6
38,295 - +1.5
38,321 + +1.0
38,322 - -0.3
38,323 + +0.1
38,323 + -0.6
38,324 - -1.3
38,324 - -1.6
38,324 - -0.4
38,357 + -0.6
38,378 + +0.4
38,390 - -0.3
38,391 + +1.9
38,395 + -0.3
38,451 + +1.9
38,466 - -0.1
38,466 - -0.1
38,486 - +0.2
38,547 - -0.8
38,560 - +0.2
38,562 + -1.6
38,563 - -1.8
38,630 - -0.3
38,630 - -0.7
38,696 - -0.1
38,724 - BACOVA_00906 0.11 +1.5
38,733 - BACOVA_00906 0.12 -1.5
38,767 + BACOVA_00906 0.14 -0.2
38,767 + BACOVA_00906 0.14 +1.1
38,785 + BACOVA_00906 0.15 -0.5
38,785 + BACOVA_00906 0.15 +1.4
38,799 - BACOVA_00906 0.16 -0.6
38,859 + BACOVA_00906 0.20 +0.1
38,905 + BACOVA_00906 0.23 +0.6
38,917 + BACOVA_00906 0.24 +0.3
38,918 - BACOVA_00906 0.24 +0.8
38,918 - BACOVA_00906 0.24 +0.9
38,922 - BACOVA_00906 0.25 +0.6
38,922 - BACOVA_00906 0.25 +0.6
38,922 - BACOVA_00906 0.25 -1.5
38,935 - BACOVA_00906 0.25 -2.1
38,957 + BACOVA_00906 0.27 -0.9
39,010 + BACOVA_00906 0.31 +0.3
39,025 - BACOVA_00906 0.32 -1.2
39,028 + BACOVA_00906 0.32 +0.2
39,028 + BACOVA_00906 0.32 -0.3
39,028 + BACOVA_00906 0.32 -3.0
39,029 - BACOVA_00906 0.32 +1.2
39,029 - BACOVA_00906 0.32 -0.1
39,039 + BACOVA_00906 0.33 +0.0
39,039 + BACOVA_00906 0.33 -0.5
39,039 + BACOVA_00906 0.33 -0.9
39,069 - BACOVA_00906 0.35 +0.3
39,088 + BACOVA_00906 0.36 -1.4
39,089 - BACOVA_00906 0.36 -1.1
39,172 + BACOVA_00906 0.42 -1.3
39,199 + BACOVA_00906 0.43 -0.6
39,199 + BACOVA_00906 0.43 -0.1
39,234 - BACOVA_00906 0.46 +0.1
39,276 - BACOVA_00906 0.49 -1.1
39,280 + BACOVA_00906 0.49 +0.8

Or see this region's nucleotide sequence