Experiment: Pectin from citrus peel; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00201 and BACOVA_00202 overlap by 1 nucleotides BACOVA_00202 and BACOVA_00203 are separated by 101 nucleotides BACOVA_00203 and BACOVA_00204 are separated by 8 nucleotides BACOVA_00204 and BACOVA_00205 are separated by 28 nucleotides BACOVA_00205 and BACOVA_00206 are separated by 102 nucleotides
BACOVA_00201: BACOVA_00201 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, at 17,955 to 19,163
_00201
BACOVA_00202: BACOVA_00202 - exonuclease, at 19,163 to 19,942
_00202
BACOVA_00203: BACOVA_00203 - DNA polymerase III, beta subunit, at 20,044 to 21,168
_00203
BACOVA_00204: BACOVA_00204 - hypothetical protein, at 21,177 to 21,293
_00204
BACOVA_00205: BACOVA_00205 - hypothetical protein, at 21,322 to 21,696
_00205
BACOVA_00206: BACOVA_00206 - hypothetical protein, at 21,799 to 23,373
_00206
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 19.220 kb on - strand at 19.345 kb on - strand, within BACOVA_00202 at 19.368 kb on - strand, within BACOVA_00202 at 19.572 kb on - strand, within BACOVA_00202 at 19.572 kb on - strand, within BACOVA_00202 at 19.572 kb on - strand, within BACOVA_00202 at 19.753 kb on - strand, within BACOVA_00202 at 19.947 kb on - strand at 19.947 kb on - strand at 19.993 kb on - strand at 20.001 kb on - strand at 20.001 kb on - strand at 20.001 kb on - strand at 20.040 kb on - strand at 20.043 kb on - strand at 21.694 kb on + strand at 21.695 kb on - strand at 21.721 kb on + strand at 21.743 kb on - strand at 21.771 kb on + strand at 21.783 kb on - strand at 21.786 kb on + strand at 21.786 kb on + strand at 21.786 kb on + strand at 21.787 kb on - strand at 21.810 kb on + strand at 21.835 kb on + strand at 21.835 kb on + strand at 21.836 kb on - strand at 21.836 kb on - strand at 21.839 kb on - strand at 21.849 kb on + strand at 21.984 kb on - strand, within BACOVA_00206 at 22.033 kb on - strand, within BACOVA_00206 at 22.064 kb on + strand, within BACOVA_00206 at 22.064 kb on + strand, within BACOVA_00206 at 22.077 kb on + strand, within BACOVA_00206 at 22.096 kb on + strand, within BACOVA_00206 at 22.125 kb on - strand, within BACOVA_00206 at 22.164 kb on + strand, within BACOVA_00206 at 22.168 kb on + strand, within BACOVA_00206
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; filtered 1 mg/ml (C) remove 19,220 - +2.8 19,345 - BACOVA_00202 0.23 +0.9 19,368 - BACOVA_00202 0.26 +1.1 19,572 - BACOVA_00202 0.52 +1.8 19,572 - BACOVA_00202 0.52 -0.1 19,572 - BACOVA_00202 0.52 +2.5 19,753 - BACOVA_00202 0.76 +0.9 19,947 - +1.1 19,947 - +0.8 19,993 - -1.1 20,001 - -0.5 20,001 - +0.9 20,001 - -0.3 20,040 - +0.9 20,043 - +0.7 21,694 + -1.9 21,695 - -0.6 21,721 + +0.7 21,743 - +1.4 21,771 + +0.7 21,783 - -0.4 21,786 + +0.5 21,786 + +0.2 21,786 + -1.6 21,787 - +0.3 21,810 + +0.9 21,835 + +0.4 21,835 + -0.1 21,836 - +1.0 21,836 - +2.8 21,839 - +0.6 21,849 + -1.4 21,984 - BACOVA_00206 0.12 -0.6 22,033 - BACOVA_00206 0.15 -1.5 22,064 + BACOVA_00206 0.17 -0.5 22,064 + BACOVA_00206 0.17 +1.7 22,077 + BACOVA_00206 0.18 +0.8 22,096 + BACOVA_00206 0.19 -0.2 22,125 - BACOVA_00206 0.21 +0.5 22,164 + BACOVA_00206 0.23 -0.6 22,168 + BACOVA_00206 0.23 +0.4
Or see this region's nucleotide sequence