Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05349

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05348 and BACOVA_05349 are separated by 36 nucleotidesBACOVA_05349 and BACOVA_05350 are separated by 21 nucleotides BACOVA_05348: BACOVA_05348 - RND transporter, HAE1/HME family, permease protein, at 835,565 to 838,615 _05348 BACOVA_05349: BACOVA_05349 - efflux transporter, RND family, MFP subunit, at 838,652 to 839,731 _05349 BACOVA_05350: BACOVA_05350 - outer membrane efflux protein, at 839,753 to 841,237 _05350 Position (kb) 838 839 840Strain fitness (log2 ratio) -2 -1 0 1 2at 837.691 kb on + strand, within BACOVA_05348at 837.733 kb on + strand, within BACOVA_05348at 837.766 kb on + strand, within BACOVA_05348at 837.766 kb on + strand, within BACOVA_05348at 837.767 kb on - strand, within BACOVA_05348at 837.767 kb on - strand, within BACOVA_05348at 837.771 kb on - strand, within BACOVA_05348at 837.812 kb on + strand, within BACOVA_05348at 837.812 kb on + strand, within BACOVA_05348at 837.828 kb on + strand, within BACOVA_05348at 837.832 kb on + strand, within BACOVA_05348at 837.852 kb on + strand, within BACOVA_05348at 837.852 kb on + strand, within BACOVA_05348at 837.855 kb on - strand, within BACOVA_05348at 837.856 kb on + strand, within BACOVA_05348at 837.856 kb on + strand, within BACOVA_05348at 837.959 kb on - strand, within BACOVA_05348at 837.985 kb on + strand, within BACOVA_05348at 837.997 kb on + strand, within BACOVA_05348at 837.997 kb on + strand, within BACOVA_05348at 837.998 kb on - strand, within BACOVA_05348at 838.015 kb on - strand, within BACOVA_05348at 838.024 kb on + strand, within BACOVA_05348at 838.025 kb on - strand, within BACOVA_05348at 838.025 kb on - strand, within BACOVA_05348at 838.032 kb on - strand, within BACOVA_05348at 838.198 kb on + strand, within BACOVA_05348at 838.203 kb on + strand, within BACOVA_05348at 838.243 kb on + strand, within BACOVA_05348at 838.306 kb on + strand, within BACOVA_05348at 838.316 kb on - strandat 838.320 kb on - strandat 838.320 kb on - strandat 838.322 kb on - strandat 838.322 kb on - strandat 838.322 kb on - strandat 838.348 kb on - strandat 838.351 kb on + strandat 838.352 kb on - strandat 838.359 kb on - strandat 838.441 kb on + strandat 838.441 kb on + strandat 838.441 kb on + strandat 838.441 kb on + strandat 838.441 kb on + strandat 838.442 kb on - strandat 838.445 kb on + strandat 838.445 kb on + strandat 838.497 kb on - strandat 838.514 kb on - strandat 838.587 kb on - strandat 838.601 kb on + strandat 838.601 kb on + strandat 838.602 kb on - strandat 838.700 kb on + strandat 838.700 kb on + strandat 838.701 kb on - strandat 838.771 kb on + strand, within BACOVA_05349at 838.774 kb on + strand, within BACOVA_05349at 838.774 kb on + strand, within BACOVA_05349at 838.781 kb on - strand, within BACOVA_05349at 838.781 kb on - strand, within BACOVA_05349at 838.819 kb on + strand, within BACOVA_05349at 838.822 kb on - strand, within BACOVA_05349at 838.932 kb on - strand, within BACOVA_05349at 838.932 kb on - strand, within BACOVA_05349at 838.940 kb on - strand, within BACOVA_05349at 838.943 kb on - strand, within BACOVA_05349at 838.945 kb on - strand, within BACOVA_05349at 838.948 kb on + strand, within BACOVA_05349at 838.949 kb on - strand, within BACOVA_05349at 838.952 kb on + strand, within BACOVA_05349at 838.953 kb on - strand, within BACOVA_05349at 839.096 kb on + strand, within BACOVA_05349at 839.099 kb on + strand, within BACOVA_05349at 839.099 kb on + strand, within BACOVA_05349at 839.144 kb on + strand, within BACOVA_05349at 839.166 kb on + strand, within BACOVA_05349at 839.167 kb on - strand, within BACOVA_05349at 839.168 kb on + strand, within BACOVA_05349at 839.169 kb on - strand, within BACOVA_05349at 839.169 kb on - strand, within BACOVA_05349at 839.217 kb on + strand, within BACOVA_05349at 839.224 kb on + strand, within BACOVA_05349at 839.225 kb on - strand, within BACOVA_05349at 839.250 kb on - strand, within BACOVA_05349at 839.290 kb on + strand, within BACOVA_05349at 839.353 kb on + strand, within BACOVA_05349at 839.353 kb on + strand, within BACOVA_05349at 839.461 kb on + strand, within BACOVA_05349at 839.462 kb on - strand, within BACOVA_05349at 839.475 kb on - strand, within BACOVA_05349at 839.475 kb on - strand, within BACOVA_05349at 839.476 kb on + strand, within BACOVA_05349at 839.491 kb on + strand, within BACOVA_05349at 839.514 kb on - strand, within BACOVA_05349at 839.548 kb on + strand, within BACOVA_05349at 839.548 kb on + strand, within BACOVA_05349at 839.553 kb on - strand, within BACOVA_05349at 839.585 kb on + strand, within BACOVA_05349at 839.586 kb on - strand, within BACOVA_05349at 839.602 kb on + strand, within BACOVA_05349at 839.603 kb on - strand, within BACOVA_05349at 839.713 kb on - strandat 839.731 kb on + strandat 839.755 kb on - strandat 839.788 kb on + strandat 839.812 kb on - strandat 839.814 kb on - strandat 839.868 kb on - strandat 839.869 kb on + strandat 839.869 kb on + strandat 839.870 kb on - strandat 839.870 kb on - strandat 839.870 kb on - strandat 839.870 kb on - strandat 839.872 kb on - strandat 839.959 kb on + strand, within BACOVA_05350at 839.960 kb on - strand, within BACOVA_05350at 839.960 kb on - strand, within BACOVA_05350at 839.964 kb on + strand, within BACOVA_05350at 839.999 kb on + strand, within BACOVA_05350at 840.040 kb on + strand, within BACOVA_05350at 840.041 kb on - strand, within BACOVA_05350at 840.050 kb on - strand, within BACOVA_05350at 840.197 kb on + strand, within BACOVA_05350at 840.205 kb on - strand, within BACOVA_05350at 840.205 kb on - strand, within BACOVA_05350at 840.293 kb on + strand, within BACOVA_05350at 840.354 kb on - strand, within BACOVA_05350at 840.362 kb on - strand, within BACOVA_05350at 840.368 kb on + strand, within BACOVA_05350at 840.369 kb on - strand, within BACOVA_05350at 840.402 kb on - strand, within BACOVA_05350at 840.416 kb on + strand, within BACOVA_05350at 840.416 kb on + strand, within BACOVA_05350at 840.497 kb on - strand, within BACOVA_05350at 840.507 kb on - strand, within BACOVA_05350at 840.539 kb on + strand, within BACOVA_05350at 840.543 kb on - strand, within BACOVA_05350at 840.590 kb on - strand, within BACOVA_05350at 840.594 kb on + strand, within BACOVA_05350at 840.595 kb on - strand, within BACOVA_05350at 840.676 kb on + strand, within BACOVA_05350at 840.677 kb on - strand, within BACOVA_05350at 840.689 kb on + strand, within BACOVA_05350at 840.691 kb on + strand, within BACOVA_05350at 840.691 kb on + strand, within BACOVA_05350at 840.711 kb on + strand, within BACOVA_05350at 840.714 kb on - strand, within BACOVA_05350

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
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837,691 + BACOVA_05348 0.70 +1.1
837,733 + BACOVA_05348 0.71 -0.4
837,766 + BACOVA_05348 0.72 +0.1
837,766 + BACOVA_05348 0.72 +1.1
837,767 - BACOVA_05348 0.72 +0.1
837,767 - BACOVA_05348 0.72 -0.7
837,771 - BACOVA_05348 0.72 -1.7
837,812 + BACOVA_05348 0.74 +0.2
837,812 + BACOVA_05348 0.74 +0.1
837,828 + BACOVA_05348 0.74 -0.0
837,832 + BACOVA_05348 0.74 -0.4
837,852 + BACOVA_05348 0.75 +2.5
837,852 + BACOVA_05348 0.75 +0.7
837,855 - BACOVA_05348 0.75 -0.1
837,856 + BACOVA_05348 0.75 +0.2
837,856 + BACOVA_05348 0.75 +0.8
837,959 - BACOVA_05348 0.78 +0.9
837,985 + BACOVA_05348 0.79 -0.7
837,997 + BACOVA_05348 0.80 +0.9
837,997 + BACOVA_05348 0.80 +0.5
837,998 - BACOVA_05348 0.80 -1.0
838,015 - BACOVA_05348 0.80 -0.0
838,024 + BACOVA_05348 0.81 -0.3
838,025 - BACOVA_05348 0.81 -0.6
838,025 - BACOVA_05348 0.81 -1.2
838,032 - BACOVA_05348 0.81 +1.6
838,198 + BACOVA_05348 0.86 -0.1
838,203 + BACOVA_05348 0.86 +1.5
838,243 + BACOVA_05348 0.88 -0.2
838,306 + BACOVA_05348 0.90 -0.3
838,316 - -0.7
838,320 - +0.7
838,320 - -1.6
838,322 - -1.4
838,322 - -1.1
838,322 - +0.9
838,348 - -1.2
838,351 + -0.3
838,352 - -0.1
838,359 - +0.4
838,441 + -2.2
838,441 + +1.9
838,441 + +0.4
838,441 + +0.5
838,441 + +1.3
838,442 - -0.7
838,445 + -0.3
838,445 + +0.5
838,497 - +1.4
838,514 - -0.4
838,587 - +0.4
838,601 + +0.2
838,601 + -0.6
838,602 - -0.5
838,700 + -0.7
838,700 + +0.3
838,701 - +0.3
838,771 + BACOVA_05349 0.11 +0.6
838,774 + BACOVA_05349 0.11 +0.1
838,774 + BACOVA_05349 0.11 -0.4
838,781 - BACOVA_05349 0.12 +0.4
838,781 - BACOVA_05349 0.12 +1.9
838,819 + BACOVA_05349 0.15 -0.7
838,822 - BACOVA_05349 0.16 -1.3
838,932 - BACOVA_05349 0.26 +1.0
838,932 - BACOVA_05349 0.26 -0.4
838,940 - BACOVA_05349 0.27 -0.4
838,943 - BACOVA_05349 0.27 +0.5
838,945 - BACOVA_05349 0.27 -0.1
838,948 + BACOVA_05349 0.27 +0.9
838,949 - BACOVA_05349 0.28 -0.1
838,952 + BACOVA_05349 0.28 +0.6
838,953 - BACOVA_05349 0.28 +0.7
839,096 + BACOVA_05349 0.41 -1.0
839,099 + BACOVA_05349 0.41 -1.3
839,099 + BACOVA_05349 0.41 +0.8
839,144 + BACOVA_05349 0.46 +0.0
839,166 + BACOVA_05349 0.48 -0.1
839,167 - BACOVA_05349 0.48 -1.1
839,168 + BACOVA_05349 0.48 +0.1
839,169 - BACOVA_05349 0.48 -0.4
839,169 - BACOVA_05349 0.48 -0.3
839,217 + BACOVA_05349 0.52 -1.1
839,224 + BACOVA_05349 0.53 +0.4
839,225 - BACOVA_05349 0.53 -1.0
839,250 - BACOVA_05349 0.55 +0.9
839,290 + BACOVA_05349 0.59 -0.7
839,353 + BACOVA_05349 0.65 +0.0
839,353 + BACOVA_05349 0.65 -0.2
839,461 + BACOVA_05349 0.75 +0.5
839,462 - BACOVA_05349 0.75 -0.0
839,475 - BACOVA_05349 0.76 -0.7
839,475 - BACOVA_05349 0.76 +0.3
839,476 + BACOVA_05349 0.76 -0.1
839,491 + BACOVA_05349 0.78 -0.2
839,514 - BACOVA_05349 0.80 -1.4
839,548 + BACOVA_05349 0.83 +2.1
839,548 + BACOVA_05349 0.83 +0.2
839,553 - BACOVA_05349 0.83 +0.5
839,585 + BACOVA_05349 0.86 -1.4
839,586 - BACOVA_05349 0.86 -1.6
839,602 + BACOVA_05349 0.88 +1.1
839,603 - BACOVA_05349 0.88 -0.9
839,713 - +0.2
839,731 + -1.7
839,755 - -0.3
839,788 + +0.0
839,812 - -0.1
839,814 - -0.7
839,868 - +0.9
839,869 + +1.2
839,869 + +0.6
839,870 - -0.8
839,870 - -0.7
839,870 - +0.6
839,870 - +0.3
839,872 - -1.5
839,959 + BACOVA_05350 0.14 -0.2
839,960 - BACOVA_05350 0.14 -2.3
839,960 - BACOVA_05350 0.14 -0.1
839,964 + BACOVA_05350 0.14 -0.9
839,999 + BACOVA_05350 0.17 +0.3
840,040 + BACOVA_05350 0.19 +0.1
840,041 - BACOVA_05350 0.19 +0.9
840,050 - BACOVA_05350 0.20 +0.8
840,197 + BACOVA_05350 0.30 -0.3
840,205 - BACOVA_05350 0.30 -0.6
840,205 - BACOVA_05350 0.30 -1.4
840,293 + BACOVA_05350 0.36 +0.5
840,354 - BACOVA_05350 0.40 -0.3
840,362 - BACOVA_05350 0.41 +0.3
840,368 + BACOVA_05350 0.41 -0.5
840,369 - BACOVA_05350 0.41 +0.5
840,402 - BACOVA_05350 0.44 -0.1
840,416 + BACOVA_05350 0.45 +0.5
840,416 + BACOVA_05350 0.45 +0.9
840,497 - BACOVA_05350 0.50 +0.7
840,507 - BACOVA_05350 0.51 +0.1
840,539 + BACOVA_05350 0.53 -1.2
840,543 - BACOVA_05350 0.53 -0.1
840,590 - BACOVA_05350 0.56 -0.6
840,594 + BACOVA_05350 0.57 +0.4
840,595 - BACOVA_05350 0.57 -0.5
840,676 + BACOVA_05350 0.62 -0.4
840,677 - BACOVA_05350 0.62 -1.1
840,689 + BACOVA_05350 0.63 +0.5
840,691 + BACOVA_05350 0.63 +0.0
840,691 + BACOVA_05350 0.63 +0.3
840,711 + BACOVA_05350 0.65 +0.9
840,714 - BACOVA_05350 0.65 -0.4

Or see this region's nucleotide sequence