Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05310 and BACOVA_05311 are separated by 31 nucleotides BACOVA_05311 and BACOVA_05312 are separated by 21 nucleotides BACOVA_05312 and BACOVA_05313 are separated by 71 nucleotides
BACOVA_05310: BACOVA_05310 - MarC family integral membrane protein, at 799,407 to 800,039
_05310
BACOVA_05311: BACOVA_05311 - hypothetical protein, at 800,071 to 800,595
_05311
BACOVA_05312: BACOVA_05312 - acetyltransferase, GNAT family, at 800,617 to 802,029
_05312
BACOVA_05313: BACOVA_05313 - putative beta-lactamase, at 802,101 to 802,982
_05313
Position (kb) 800
801
802
803 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 799.626 kb on - strand, within BACOVA_05310 at 799.667 kb on + strand, within BACOVA_05310 at 799.749 kb on - strand, within BACOVA_05310 at 799.770 kb on - strand, within BACOVA_05310 at 799.778 kb on + strand, within BACOVA_05310 at 799.860 kb on - strand, within BACOVA_05310 at 799.862 kb on + strand, within BACOVA_05310 at 799.869 kb on - strand, within BACOVA_05310 at 799.888 kb on + strand, within BACOVA_05310 at 799.953 kb on - strand, within BACOVA_05310 at 800.006 kb on + strand at 800.006 kb on + strand at 800.006 kb on + strand at 800.006 kb on + strand at 800.006 kb on + strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.008 kb on + strand at 800.018 kb on - strand at 800.033 kb on - strand at 800.038 kb on - strand at 800.278 kb on + strand, within BACOVA_05311 at 800.327 kb on - strand, within BACOVA_05311 at 800.439 kb on + strand, within BACOVA_05311 at 800.440 kb on - strand, within BACOVA_05311 at 800.444 kb on - strand, within BACOVA_05311 at 800.444 kb on - strand, within BACOVA_05311 at 800.459 kb on + strand, within BACOVA_05311 at 800.469 kb on + strand, within BACOVA_05311 at 800.528 kb on - strand, within BACOVA_05311 at 800.528 kb on - strand, within BACOVA_05311 at 800.540 kb on - strand, within BACOVA_05311 at 800.540 kb on - strand, within BACOVA_05311 at 800.550 kb on + strand at 800.587 kb on + strand at 800.588 kb on - strand at 800.597 kb on + strand at 800.598 kb on - strand at 800.618 kb on + strand at 800.618 kb on + strand at 800.618 kb on + strand at 800.618 kb on + strand at 800.619 kb on - strand at 800.619 kb on - strand at 800.730 kb on - strand at 800.762 kb on - strand, within BACOVA_05312 at 800.772 kb on + strand, within BACOVA_05312 at 800.778 kb on + strand, within BACOVA_05312 at 800.779 kb on - strand, within BACOVA_05312 at 800.803 kb on + strand, within BACOVA_05312 at 800.803 kb on + strand, within BACOVA_05312 at 800.804 kb on - strand, within BACOVA_05312 at 800.845 kb on + strand, within BACOVA_05312 at 800.845 kb on + strand, within BACOVA_05312 at 800.938 kb on + strand, within BACOVA_05312 at 800.939 kb on - strand, within BACOVA_05312 at 800.942 kb on + strand, within BACOVA_05312 at 800.976 kb on + strand, within BACOVA_05312 at 801.057 kb on + strand, within BACOVA_05312 at 801.080 kb on + strand, within BACOVA_05312 at 801.099 kb on - strand, within BACOVA_05312 at 801.099 kb on - strand, within BACOVA_05312 at 801.139 kb on - strand, within BACOVA_05312 at 801.147 kb on - strand, within BACOVA_05312 at 801.204 kb on + strand, within BACOVA_05312 at 801.275 kb on + strand, within BACOVA_05312 at 801.275 kb on + strand, within BACOVA_05312 at 801.276 kb on - strand, within BACOVA_05312 at 801.385 kb on - strand, within BACOVA_05312 at 801.385 kb on - strand, within BACOVA_05312 at 801.392 kb on - strand, within BACOVA_05312 at 801.392 kb on - strand, within BACOVA_05312 at 801.406 kb on + strand, within BACOVA_05312 at 801.407 kb on - strand, within BACOVA_05312 at 801.423 kb on + strand, within BACOVA_05312 at 801.423 kb on + strand, within BACOVA_05312 at 801.424 kb on - strand, within BACOVA_05312 at 801.424 kb on - strand, within BACOVA_05312 at 801.462 kb on + strand, within BACOVA_05312 at 801.591 kb on + strand, within BACOVA_05312 at 801.591 kb on + strand, within BACOVA_05312 at 801.592 kb on - strand, within BACOVA_05312 at 801.594 kb on + strand, within BACOVA_05312 at 801.598 kb on + strand, within BACOVA_05312 at 801.689 kb on - strand, within BACOVA_05312 at 801.702 kb on - strand, within BACOVA_05312 at 801.717 kb on + strand, within BACOVA_05312 at 801.738 kb on + strand, within BACOVA_05312 at 801.738 kb on + strand, within BACOVA_05312 at 801.739 kb on - strand, within BACOVA_05312 at 801.850 kb on + strand, within BACOVA_05312 at 801.851 kb on - strand, within BACOVA_05312 at 801.856 kb on + strand, within BACOVA_05312 at 801.856 kb on + strand, within BACOVA_05312 at 801.856 kb on + strand, within BACOVA_05312 at 801.857 kb on - strand, within BACOVA_05312 at 801.858 kb on + strand, within BACOVA_05312 at 801.858 kb on + strand, within BACOVA_05312 at 801.901 kb on - strand at 801.905 kb on + strand at 801.906 kb on - strand at 801.971 kb on + strand at 801.971 kb on + strand at 801.971 kb on + strand at 801.971 kb on + strand at 801.972 kb on - strand at 802.044 kb on + strand at 802.052 kb on - strand at 802.097 kb on + strand at 802.102 kb on + strand at 802.113 kb on + strand at 802.114 kb on - strand at 802.114 kb on - strand at 802.114 kb on - strand at 802.148 kb on + strand at 802.154 kb on + strand at 802.155 kb on - strand at 802.169 kb on + strand at 802.170 kb on - strand at 802.200 kb on + strand, within BACOVA_05313 at 802.200 kb on + strand, within BACOVA_05313 at 802.202 kb on + strand, within BACOVA_05313 at 802.203 kb on - strand, within BACOVA_05313 at 802.205 kb on + strand, within BACOVA_05313 at 802.205 kb on + strand, within BACOVA_05313 at 802.205 kb on + strand, within BACOVA_05313 at 802.206 kb on - strand, within BACOVA_05313 at 802.206 kb on - strand, within BACOVA_05313 at 802.207 kb on + strand, within BACOVA_05313 at 802.208 kb on - strand, within BACOVA_05313 at 802.212 kb on - strand, within BACOVA_05313 at 802.248 kb on - strand, within BACOVA_05313 at 802.248 kb on - strand, within BACOVA_05313 at 802.275 kb on - strand, within BACOVA_05313 at 802.302 kb on + strand, within BACOVA_05313 at 802.377 kb on + strand, within BACOVA_05313 at 802.390 kb on + strand, within BACOVA_05313 at 802.473 kb on + strand, within BACOVA_05313 at 802.534 kb on - strand, within BACOVA_05313 at 802.544 kb on + strand, within BACOVA_05313 at 802.546 kb on + strand, within BACOVA_05313 at 802.547 kb on - strand, within BACOVA_05313 at 802.555 kb on - strand, within BACOVA_05313 at 802.673 kb on + strand, within BACOVA_05313 at 802.674 kb on - strand, within BACOVA_05313 at 802.691 kb on - strand, within BACOVA_05313 at 802.691 kb on - strand, within BACOVA_05313 at 802.694 kb on + strand, within BACOVA_05313 at 802.760 kb on + strand, within BACOVA_05313 at 802.762 kb on + strand, within BACOVA_05313 at 802.798 kb on - strand, within BACOVA_05313 at 802.821 kb on - strand, within BACOVA_05313 at 802.826 kb on + strand, within BACOVA_05313 at 802.837 kb on - strand, within BACOVA_05313 at 802.841 kb on + strand, within BACOVA_05313 at 802.866 kb on + strand, within BACOVA_05313 at 802.867 kb on - strand, within BACOVA_05313 at 802.872 kb on + strand, within BACOVA_05313 at 802.872 kb on + strand, within BACOVA_05313 at 802.873 kb on - strand, within BACOVA_05313 at 802.954 kb on - strand at 802.966 kb on - strand at 802.968 kb on + strand at 803.028 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 799,626 - BACOVA_05310 0.35 -1.0 799,667 + BACOVA_05310 0.41 +0.2 799,749 - BACOVA_05310 0.54 +0.2 799,770 - BACOVA_05310 0.57 -0.0 799,778 + BACOVA_05310 0.59 -0.4 799,860 - BACOVA_05310 0.72 -0.1 799,862 + BACOVA_05310 0.72 +1.3 799,869 - BACOVA_05310 0.73 +0.7 799,888 + BACOVA_05310 0.76 +0.2 799,953 - BACOVA_05310 0.86 -0.9 800,006 + +1.5 800,006 + +0.3 800,006 + +0.2 800,006 + -1.4 800,006 + -0.8 800,007 - -1.1 800,007 - +1.0 800,007 - +2.7 800,007 - +0.4 800,007 - -0.1 800,007 - +0.5 800,007 - +1.5 800,008 + -0.1 800,018 - +0.2 800,033 - -0.2 800,038 - +0.3 800,278 + BACOVA_05311 0.39 +1.3 800,327 - BACOVA_05311 0.49 +0.0 800,439 + BACOVA_05311 0.70 +0.7 800,440 - BACOVA_05311 0.70 +0.7 800,444 - BACOVA_05311 0.71 +0.1 800,444 - BACOVA_05311 0.71 +0.9 800,459 + BACOVA_05311 0.74 +1.2 800,469 + BACOVA_05311 0.76 +0.4 800,528 - BACOVA_05311 0.87 +0.2 800,528 - BACOVA_05311 0.87 -0.4 800,540 - BACOVA_05311 0.89 +0.1 800,540 - BACOVA_05311 0.89 -0.4 800,550 + -0.8 800,587 + +1.2 800,588 - +0.9 800,597 + +0.2 800,598 - +1.4 800,618 + +0.7 800,618 + -0.2 800,618 + -2.1 800,618 + -1.7 800,619 - +0.9 800,619 - +0.1 800,730 - +0.9 800,762 - BACOVA_05312 0.10 +0.9 800,772 + BACOVA_05312 0.11 +1.5 800,778 + BACOVA_05312 0.11 +1.1 800,779 - BACOVA_05312 0.11 +1.4 800,803 + BACOVA_05312 0.13 -0.9 800,803 + BACOVA_05312 0.13 +0.5 800,804 - BACOVA_05312 0.13 -0.6 800,845 + BACOVA_05312 0.16 -0.2 800,845 + BACOVA_05312 0.16 -0.6 800,938 + BACOVA_05312 0.23 -0.4 800,939 - BACOVA_05312 0.23 -0.4 800,942 + BACOVA_05312 0.23 -1.0 800,976 + BACOVA_05312 0.25 +0.2 801,057 + BACOVA_05312 0.31 +0.4 801,080 + BACOVA_05312 0.33 +0.9 801,099 - BACOVA_05312 0.34 -0.1 801,099 - BACOVA_05312 0.34 -0.7 801,139 - BACOVA_05312 0.37 -0.2 801,147 - BACOVA_05312 0.38 +0.1 801,204 + BACOVA_05312 0.42 -0.1 801,275 + BACOVA_05312 0.47 -1.6 801,275 + BACOVA_05312 0.47 +1.1 801,276 - BACOVA_05312 0.47 +1.4 801,385 - BACOVA_05312 0.54 -0.4 801,385 - BACOVA_05312 0.54 +1.5 801,392 - BACOVA_05312 0.55 +0.9 801,392 - BACOVA_05312 0.55 -0.1 801,406 + BACOVA_05312 0.56 +1.2 801,407 - BACOVA_05312 0.56 +0.9 801,423 + BACOVA_05312 0.57 +0.5 801,423 + BACOVA_05312 0.57 +0.3 801,424 - BACOVA_05312 0.57 +0.5 801,424 - BACOVA_05312 0.57 +0.2 801,462 + BACOVA_05312 0.60 -0.4 801,591 + BACOVA_05312 0.69 +0.0 801,591 + BACOVA_05312 0.69 -0.5 801,592 - BACOVA_05312 0.69 +1.3 801,594 + BACOVA_05312 0.69 +0.7 801,598 + BACOVA_05312 0.69 +0.5 801,689 - BACOVA_05312 0.76 +0.8 801,702 - BACOVA_05312 0.77 -0.2 801,717 + BACOVA_05312 0.78 +0.8 801,738 + BACOVA_05312 0.79 +0.3 801,738 + BACOVA_05312 0.79 +0.5 801,739 - BACOVA_05312 0.79 +0.5 801,850 + BACOVA_05312 0.87 +0.4 801,851 - BACOVA_05312 0.87 +0.2 801,856 + BACOVA_05312 0.88 -0.3 801,856 + BACOVA_05312 0.88 -0.3 801,856 + BACOVA_05312 0.88 -0.5 801,857 - BACOVA_05312 0.88 -0.4 801,858 + BACOVA_05312 0.88 +0.4 801,858 + BACOVA_05312 0.88 -0.2 801,901 - +0.3 801,905 + -0.7 801,906 - -1.1 801,971 + -0.4 801,971 + -1.4 801,971 + +3.5 801,971 + -1.0 801,972 - -0.1 802,044 + -0.1 802,052 - -2.0 802,097 + -0.7 802,102 + +0.9 802,113 + -0.6 802,114 - -0.7 802,114 - +0.9 802,114 - +0.7 802,148 + -0.5 802,154 + +0.2 802,155 - -0.3 802,169 + +0.7 802,170 - -0.5 802,200 + BACOVA_05313 0.11 +0.3 802,200 + BACOVA_05313 0.11 +0.2 802,202 + BACOVA_05313 0.11 -1.0 802,203 - BACOVA_05313 0.12 +0.6 802,205 + BACOVA_05313 0.12 -0.3 802,205 + BACOVA_05313 0.12 -1.1 802,205 + BACOVA_05313 0.12 -2.8 802,206 - BACOVA_05313 0.12 -1.1 802,206 - BACOVA_05313 0.12 +0.5 802,207 + BACOVA_05313 0.12 -0.4 802,208 - BACOVA_05313 0.12 +0.6 802,212 - BACOVA_05313 0.13 +0.1 802,248 - BACOVA_05313 0.17 -0.5 802,248 - BACOVA_05313 0.17 -1.1 802,275 - BACOVA_05313 0.20 +1.9 802,302 + BACOVA_05313 0.23 -0.4 802,377 + BACOVA_05313 0.31 +1.1 802,390 + BACOVA_05313 0.33 +0.6 802,473 + BACOVA_05313 0.42 -0.1 802,534 - BACOVA_05313 0.49 +0.6 802,544 + BACOVA_05313 0.50 +0.8 802,546 + BACOVA_05313 0.50 -1.7 802,547 - BACOVA_05313 0.51 +1.7 802,555 - BACOVA_05313 0.51 -0.8 802,673 + BACOVA_05313 0.65 -0.4 802,674 - BACOVA_05313 0.65 +0.4 802,691 - BACOVA_05313 0.67 -0.3 802,691 - BACOVA_05313 0.67 -1.0 802,694 + BACOVA_05313 0.67 -1.4 802,760 + BACOVA_05313 0.75 -0.2 802,762 + BACOVA_05313 0.75 -0.7 802,798 - BACOVA_05313 0.79 -0.6 802,821 - BACOVA_05313 0.82 +0.9 802,826 + BACOVA_05313 0.82 -0.4 802,837 - BACOVA_05313 0.83 -0.1 802,841 + BACOVA_05313 0.84 +0.3 802,866 + BACOVA_05313 0.87 -0.8 802,867 - BACOVA_05313 0.87 -0.2 802,872 + BACOVA_05313 0.87 +0.4 802,872 + BACOVA_05313 0.87 -1.8 802,873 - BACOVA_05313 0.88 -2.1 802,954 - +0.4 802,966 - -0.4 802,968 + +0.7 803,028 + -0.1
Or see this region's nucleotide sequence