Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05303

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05302 and BACOVA_05303 are separated by 33 nucleotidesBACOVA_05303 and BACOVA_05304 are separated by 124 nucleotides BACOVA_05302: BACOVA_05302 - potassium uptake protein, TrkH family, at 790,837 to 792,342 _05302 BACOVA_05303: BACOVA_05303 - hypothetical protein, at 792,376 to 792,627 _05303 BACOVA_05304: BACOVA_05304 - MATE efflux family protein, at 792,752 to 794,125 _05304 Position (kb) 792 793Strain fitness (log2 ratio) -2 -1 0 1 2at 791.385 kb on + strand, within BACOVA_05302at 791.393 kb on + strand, within BACOVA_05302at 791.483 kb on + strand, within BACOVA_05302at 791.483 kb on + strand, within BACOVA_05302at 791.577 kb on - strand, within BACOVA_05302at 791.600 kb on + strand, within BACOVA_05302at 791.601 kb on - strand, within BACOVA_05302at 791.623 kb on - strand, within BACOVA_05302at 791.623 kb on - strand, within BACOVA_05302at 791.687 kb on + strand, within BACOVA_05302at 791.807 kb on + strand, within BACOVA_05302at 791.829 kb on + strand, within BACOVA_05302at 791.830 kb on - strand, within BACOVA_05302at 791.830 kb on - strand, within BACOVA_05302at 791.857 kb on + strand, within BACOVA_05302at 791.860 kb on - strand, within BACOVA_05302at 791.860 kb on - strand, within BACOVA_05302at 791.860 kb on - strand, within BACOVA_05302at 791.860 kb on - strand, within BACOVA_05302at 791.863 kb on - strand, within BACOVA_05302at 791.863 kb on - strand, within BACOVA_05302at 791.885 kb on + strand, within BACOVA_05302at 791.886 kb on - strand, within BACOVA_05302at 791.940 kb on + strand, within BACOVA_05302at 792.030 kb on + strand, within BACOVA_05302at 792.030 kb on + strand, within BACOVA_05302at 792.057 kb on + strand, within BACOVA_05302at 792.057 kb on + strand, within BACOVA_05302at 792.062 kb on + strand, within BACOVA_05302at 792.067 kb on - strand, within BACOVA_05302at 792.101 kb on + strand, within BACOVA_05302at 792.168 kb on + strand, within BACOVA_05302at 792.168 kb on + strand, within BACOVA_05302at 792.179 kb on + strand, within BACOVA_05302at 792.180 kb on - strand, within BACOVA_05302at 792.221 kb on - strandat 792.221 kb on - strandat 792.237 kb on - strandat 792.340 kb on + strandat 792.341 kb on - strandat 792.459 kb on + strand, within BACOVA_05303at 792.460 kb on - strand, within BACOVA_05303at 792.463 kb on + strand, within BACOVA_05303at 792.463 kb on + strand, within BACOVA_05303at 792.463 kb on + strand, within BACOVA_05303at 792.463 kb on + strand, within BACOVA_05303at 792.464 kb on - strand, within BACOVA_05303at 792.464 kb on - strand, within BACOVA_05303at 792.499 kb on + strand, within BACOVA_05303at 792.500 kb on - strand, within BACOVA_05303at 792.500 kb on - strand, within BACOVA_05303at 792.677 kb on - strandat 792.745 kb on + strandat 792.746 kb on - strandat 792.789 kb on + strandat 792.790 kb on - strandat 792.901 kb on - strand, within BACOVA_05304at 793.010 kb on + strand, within BACOVA_05304at 793.010 kb on + strand, within BACOVA_05304at 793.011 kb on - strand, within BACOVA_05304at 793.015 kb on + strand, within BACOVA_05304at 793.091 kb on - strand, within BACOVA_05304at 793.108 kb on - strand, within BACOVA_05304at 793.151 kb on + strand, within BACOVA_05304at 793.168 kb on + strand, within BACOVA_05304at 793.175 kb on - strand, within BACOVA_05304at 793.201 kb on + strand, within BACOVA_05304at 793.202 kb on - strand, within BACOVA_05304at 793.282 kb on + strand, within BACOVA_05304at 793.384 kb on + strand, within BACOVA_05304at 793.384 kb on + strand, within BACOVA_05304at 793.385 kb on - strand, within BACOVA_05304at 793.388 kb on + strand, within BACOVA_05304at 793.388 kb on + strand, within BACOVA_05304at 793.388 kb on + strand, within BACOVA_05304at 793.388 kb on + strand, within BACOVA_05304at 793.388 kb on + strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.390 kb on + strand, within BACOVA_05304at 793.391 kb on - strand, within BACOVA_05304at 793.391 kb on - strand, within BACOVA_05304at 793.391 kb on - strand, within BACOVA_05304at 793.411 kb on - strand, within BACOVA_05304at 793.523 kb on - strand, within BACOVA_05304at 793.540 kb on + strand, within BACOVA_05304at 793.541 kb on - strand, within BACOVA_05304at 793.573 kb on + strand, within BACOVA_05304at 793.603 kb on + strand, within BACOVA_05304at 793.603 kb on + strand, within BACOVA_05304at 793.609 kb on + strand, within BACOVA_05304at 793.609 kb on + strand, within BACOVA_05304at 793.610 kb on - strand, within BACOVA_05304

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
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791,385 + BACOVA_05302 0.36 -0.7
791,393 + BACOVA_05302 0.37 +0.7
791,483 + BACOVA_05302 0.43 +0.3
791,483 + BACOVA_05302 0.43 +0.8
791,577 - BACOVA_05302 0.49 +0.7
791,600 + BACOVA_05302 0.51 +1.2
791,601 - BACOVA_05302 0.51 +0.5
791,623 - BACOVA_05302 0.52 +1.7
791,623 - BACOVA_05302 0.52 -0.1
791,687 + BACOVA_05302 0.56 -1.0
791,807 + BACOVA_05302 0.64 +0.1
791,829 + BACOVA_05302 0.66 +0.6
791,830 - BACOVA_05302 0.66 +0.3
791,830 - BACOVA_05302 0.66 -0.8
791,857 + BACOVA_05302 0.68 -0.6
791,860 - BACOVA_05302 0.68 +0.1
791,860 - BACOVA_05302 0.68 -1.1
791,860 - BACOVA_05302 0.68 +0.1
791,860 - BACOVA_05302 0.68 -1.8
791,863 - BACOVA_05302 0.68 +0.1
791,863 - BACOVA_05302 0.68 -0.8
791,885 + BACOVA_05302 0.70 +0.5
791,886 - BACOVA_05302 0.70 -0.0
791,940 + BACOVA_05302 0.73 +0.1
792,030 + BACOVA_05302 0.79 -1.7
792,030 + BACOVA_05302 0.79 -0.6
792,057 + BACOVA_05302 0.81 +0.7
792,057 + BACOVA_05302 0.81 +0.7
792,062 + BACOVA_05302 0.81 +0.4
792,067 - BACOVA_05302 0.82 +1.6
792,101 + BACOVA_05302 0.84 -0.7
792,168 + BACOVA_05302 0.88 +0.9
792,168 + BACOVA_05302 0.88 +1.5
792,179 + BACOVA_05302 0.89 +0.1
792,180 - BACOVA_05302 0.89 +0.5
792,221 - +0.2
792,221 - -0.6
792,237 - -1.4
792,340 + -0.7
792,341 - +0.5
792,459 + BACOVA_05303 0.33 +0.0
792,460 - BACOVA_05303 0.33 -0.4
792,463 + BACOVA_05303 0.35 -0.9
792,463 + BACOVA_05303 0.35 +0.2
792,463 + BACOVA_05303 0.35 +0.9
792,463 + BACOVA_05303 0.35 +0.6
792,464 - BACOVA_05303 0.35 -2.4
792,464 - BACOVA_05303 0.35 -1.0
792,499 + BACOVA_05303 0.49 +1.1
792,500 - BACOVA_05303 0.49 +0.7
792,500 - BACOVA_05303 0.49 -0.5
792,677 - -0.8
792,745 + +0.1
792,746 - +0.7
792,789 + -1.0
792,790 - +1.4
792,901 - BACOVA_05304 0.11 +2.5
793,010 + BACOVA_05304 0.19 -0.2
793,010 + BACOVA_05304 0.19 +0.9
793,011 - BACOVA_05304 0.19 -0.6
793,015 + BACOVA_05304 0.19 +0.2
793,091 - BACOVA_05304 0.25 +0.1
793,108 - BACOVA_05304 0.26 -0.6
793,151 + BACOVA_05304 0.29 -1.9
793,168 + BACOVA_05304 0.30 +0.6
793,175 - BACOVA_05304 0.31 +0.9
793,201 + BACOVA_05304 0.33 +0.2
793,202 - BACOVA_05304 0.33 -0.1
793,282 + BACOVA_05304 0.39 +0.2
793,384 + BACOVA_05304 0.46 +0.5
793,384 + BACOVA_05304 0.46 -0.4
793,385 - BACOVA_05304 0.46 +0.6
793,388 + BACOVA_05304 0.46 -1.1
793,388 + BACOVA_05304 0.46 -0.1
793,388 + BACOVA_05304 0.46 -1.0
793,388 + BACOVA_05304 0.46 -0.2
793,388 + BACOVA_05304 0.46 +0.9
793,389 - BACOVA_05304 0.46 -1.2
793,389 - BACOVA_05304 0.46 +0.1
793,389 - BACOVA_05304 0.46 -0.1
793,389 - BACOVA_05304 0.46 -0.4
793,389 - BACOVA_05304 0.46 +0.2
793,389 - BACOVA_05304 0.46 +1.0
793,390 + BACOVA_05304 0.46 -1.7
793,391 - BACOVA_05304 0.47 +0.1
793,391 - BACOVA_05304 0.47 -0.5
793,391 - BACOVA_05304 0.47 +0.6
793,411 - BACOVA_05304 0.48 +1.3
793,523 - BACOVA_05304 0.56 +0.2
793,540 + BACOVA_05304 0.57 -1.3
793,541 - BACOVA_05304 0.57 +0.6
793,573 + BACOVA_05304 0.60 -0.7
793,603 + BACOVA_05304 0.62 -0.1
793,603 + BACOVA_05304 0.62 +0.2
793,609 + BACOVA_05304 0.62 -1.7
793,609 + BACOVA_05304 0.62 -1.0
793,610 - BACOVA_05304 0.62 -0.2

Or see this region's nucleotide sequence