Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04603

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04601 and BACOVA_04602 overlap by 19 nucleotidesBACOVA_04602 and BACOVA_04603 are separated by 36 nucleotidesBACOVA_04603 and BACOVA_04604 are separated by 81 nucleotides BACOVA_04601: BACOVA_04601 - LeuA allosteric (dimerization) domain protein, at 549,343 to 550,890 _04601 BACOVA_04602: BACOVA_04602 - 3-isopropylmalate dehydratase, small subunit, at 550,872 to 551,468 _04602 BACOVA_04603: BACOVA_04603 - 3-isopropylmalate dehydratase, large subunit, at 551,505 to 552,899 _04603 BACOVA_04604: BACOVA_04604 - 2-isopropylmalate synthase, at 552,981 to 554,477 _04604 Position (kb) 551 552 553Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 550.507 kb on + strand, within BACOVA_04601at 550.508 kb on - strand, within BACOVA_04601at 550.508 kb on - strand, within BACOVA_04601at 550.508 kb on - strand, within BACOVA_04601at 550.508 kb on - strand, within BACOVA_04601at 550.508 kb on - strand, within BACOVA_04601at 550.508 kb on - strand, within BACOVA_04601at 550.508 kb on - strand, within BACOVA_04601at 550.555 kb on - strand, within BACOVA_04601at 550.576 kb on - strand, within BACOVA_04601at 550.630 kb on - strand, within BACOVA_04601at 550.630 kb on - strand, within BACOVA_04601at 550.630 kb on - strand, within BACOVA_04601at 550.674 kb on + strand, within BACOVA_04601at 550.759 kb on + strandat 550.759 kb on + strandat 550.780 kb on + strandat 550.781 kb on - strandat 550.796 kb on - strandat 550.796 kb on - strandat 550.819 kb on + strandat 550.901 kb on + strandat 550.991 kb on + strand, within BACOVA_04602at 551.138 kb on + strand, within BACOVA_04602at 551.138 kb on + strand, within BACOVA_04602at 551.139 kb on - strand, within BACOVA_04602at 551.250 kb on + strand, within BACOVA_04602at 551.261 kb on + strand, within BACOVA_04602at 551.263 kb on + strand, within BACOVA_04602at 551.312 kb on + strand, within BACOVA_04602at 551.313 kb on - strand, within BACOVA_04602at 551.314 kb on + strand, within BACOVA_04602at 551.315 kb on - strand, within BACOVA_04602at 551.391 kb on - strand, within BACOVA_04602at 551.407 kb on - strand, within BACOVA_04602at 551.428 kb on - strandat 551.436 kb on - strandat 551.436 kb on - strandat 551.436 kb on - strandat 551.442 kb on + strandat 551.442 kb on + strandat 551.446 kb on - strandat 551.446 kb on - strandat 551.447 kb on + strandat 551.462 kb on + strandat 551.628 kb on - strandat 551.632 kb on - strandat 551.657 kb on + strand, within BACOVA_04603at 551.657 kb on + strand, within BACOVA_04603at 551.724 kb on + strand, within BACOVA_04603at 551.852 kb on + strand, within BACOVA_04603at 551.864 kb on + strand, within BACOVA_04603at 551.865 kb on - strand, within BACOVA_04603at 551.881 kb on - strand, within BACOVA_04603at 551.884 kb on + strand, within BACOVA_04603at 551.930 kb on + strand, within BACOVA_04603at 551.932 kb on + strand, within BACOVA_04603at 551.932 kb on + strand, within BACOVA_04603at 551.932 kb on + strand, within BACOVA_04603at 551.933 kb on - strand, within BACOVA_04603at 551.933 kb on - strand, within BACOVA_04603at 551.985 kb on - strand, within BACOVA_04603at 551.988 kb on - strand, within BACOVA_04603at 551.988 kb on - strand, within BACOVA_04603at 551.994 kb on - strand, within BACOVA_04603at 551.994 kb on - strand, within BACOVA_04603at 552.034 kb on + strand, within BACOVA_04603at 552.039 kb on - strand, within BACOVA_04603at 552.177 kb on - strand, within BACOVA_04603at 552.178 kb on + strand, within BACOVA_04603at 552.209 kb on + strand, within BACOVA_04603at 552.210 kb on - strand, within BACOVA_04603at 552.295 kb on + strand, within BACOVA_04603at 552.307 kb on + strand, within BACOVA_04603at 552.308 kb on - strand, within BACOVA_04603at 552.335 kb on + strand, within BACOVA_04603at 552.335 kb on + strand, within BACOVA_04603at 552.336 kb on - strand, within BACOVA_04603at 552.344 kb on + strand, within BACOVA_04603at 552.344 kb on + strand, within BACOVA_04603at 552.344 kb on + strand, within BACOVA_04603at 552.344 kb on + strand, within BACOVA_04603at 552.345 kb on - strand, within BACOVA_04603at 552.345 kb on - strand, within BACOVA_04603at 552.346 kb on + strand, within BACOVA_04603at 552.347 kb on - strand, within BACOVA_04603at 552.402 kb on - strand, within BACOVA_04603at 552.431 kb on + strand, within BACOVA_04603at 552.432 kb on - strand, within BACOVA_04603at 552.432 kb on - strand, within BACOVA_04603at 552.432 kb on - strand, within BACOVA_04603at 552.512 kb on + strand, within BACOVA_04603at 552.513 kb on - strand, within BACOVA_04603at 552.584 kb on + strand, within BACOVA_04603at 552.711 kb on - strand, within BACOVA_04603at 552.713 kb on + strand, within BACOVA_04603at 552.713 kb on + strand, within BACOVA_04603at 552.750 kb on + strand, within BACOVA_04603at 552.794 kb on + strandat 552.813 kb on + strandat 552.814 kb on - strandat 552.826 kb on + strandat 552.855 kb on - strandat 552.882 kb on - strandat 552.893 kb on + strandat 552.893 kb on + strandat 552.910 kb on - strandat 552.924 kb on + strandat 552.953 kb on - strandat 552.953 kb on - strandat 553.001 kb on + strandat 553.020 kb on + strandat 553.034 kb on + strandat 553.034 kb on + strandat 553.035 kb on - strandat 553.038 kb on - strandat 553.063 kb on + strandat 553.079 kb on - strandat 553.083 kb on + strandat 553.101 kb on - strandat 553.127 kb on + strandat 553.168 kb on - strand, within BACOVA_04604at 553.190 kb on + strand, within BACOVA_04604at 553.191 kb on - strand, within BACOVA_04604at 553.247 kb on + strand, within BACOVA_04604at 553.248 kb on - strand, within BACOVA_04604at 553.251 kb on - strand, within BACOVA_04604at 553.263 kb on - strand, within BACOVA_04604at 553.358 kb on + strand, within BACOVA_04604at 553.358 kb on + strand, within BACOVA_04604at 553.359 kb on - strand, within BACOVA_04604at 553.370 kb on + strand, within BACOVA_04604at 553.370 kb on + strand, within BACOVA_04604at 553.371 kb on - strand, within BACOVA_04604at 553.411 kb on + strand, within BACOVA_04604at 553.411 kb on + strand, within BACOVA_04604at 553.412 kb on - strand, within BACOVA_04604at 553.412 kb on - strand, within BACOVA_04604at 553.414 kb on - strand, within BACOVA_04604at 553.419 kb on - strand, within BACOVA_04604at 553.454 kb on + strand, within BACOVA_04604at 553.454 kb on + strand, within BACOVA_04604at 553.455 kb on - strand, within BACOVA_04604at 553.455 kb on - strand, within BACOVA_04604at 553.511 kb on + strand, within BACOVA_04604at 553.511 kb on + strand, within BACOVA_04604at 553.611 kb on - strand, within BACOVA_04604at 553.639 kb on - strand, within BACOVA_04604at 553.663 kb on - strand, within BACOVA_04604at 553.694 kb on + strand, within BACOVA_04604at 553.700 kb on + strand, within BACOVA_04604at 553.713 kb on - strand, within BACOVA_04604at 553.716 kb on + strand, within BACOVA_04604at 553.717 kb on - strand, within BACOVA_04604at 553.733 kb on + strand, within BACOVA_04604at 553.764 kb on - strand, within BACOVA_04604at 553.764 kb on - strand, within BACOVA_04604at 553.796 kb on + strand, within BACOVA_04604at 553.796 kb on + strand, within BACOVA_04604at 553.797 kb on - strand, within BACOVA_04604at 553.838 kb on + strand, within BACOVA_04604at 553.838 kb on + strand, within BACOVA_04604at 553.854 kb on - strand, within BACOVA_04604

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
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550,507 + BACOVA_04601 0.75 -2.8
550,508 - BACOVA_04601 0.75 -1.1
550,508 - BACOVA_04601 0.75 -1.4
550,508 - BACOVA_04601 0.75 -2.7
550,508 - BACOVA_04601 0.75 -4.3
550,508 - BACOVA_04601 0.75 -1.6
550,508 - BACOVA_04601 0.75 -2.8
550,508 - BACOVA_04601 0.75 -2.7
550,555 - BACOVA_04601 0.78 -0.7
550,576 - BACOVA_04601 0.80 -2.3
550,630 - BACOVA_04601 0.83 -3.3
550,630 - BACOVA_04601 0.83 -2.6
550,630 - BACOVA_04601 0.83 -3.7
550,674 + BACOVA_04601 0.86 -3.9
550,759 + -2.6
550,759 + -3.1
550,780 + -2.8
550,781 - -2.1
550,796 - -1.4
550,796 - -2.3
550,819 + -3.8
550,901 + -3.3
550,991 + BACOVA_04602 0.20 -1.7
551,138 + BACOVA_04602 0.45 -3.1
551,138 + BACOVA_04602 0.45 -2.8
551,139 - BACOVA_04602 0.45 -1.4
551,250 + BACOVA_04602 0.63 -3.0
551,261 + BACOVA_04602 0.65 -3.0
551,263 + BACOVA_04602 0.65 -1.4
551,312 + BACOVA_04602 0.74 -4.3
551,313 - BACOVA_04602 0.74 -2.8
551,314 + BACOVA_04602 0.74 -3.0
551,315 - BACOVA_04602 0.74 -0.7
551,391 - BACOVA_04602 0.87 -3.9
551,407 - BACOVA_04602 0.90 -1.9
551,428 - -1.7
551,436 - -4.4
551,436 - -2.4
551,436 - -4.0
551,442 + -4.0
551,442 + -4.0
551,446 - -2.5
551,446 - -4.0
551,447 + -2.3
551,462 + -1.3
551,628 - -3.9
551,632 - -2.3
551,657 + BACOVA_04603 0.11 +0.9
551,657 + BACOVA_04603 0.11 -5.4
551,724 + BACOVA_04603 0.16 -2.7
551,852 + BACOVA_04603 0.25 -2.9
551,864 + BACOVA_04603 0.26 -3.8
551,865 - BACOVA_04603 0.26 -2.1
551,881 - BACOVA_04603 0.27 -2.6
551,884 + BACOVA_04603 0.27 -4.1
551,930 + BACOVA_04603 0.30 -3.3
551,932 + BACOVA_04603 0.31 -2.8
551,932 + BACOVA_04603 0.31 -1.9
551,932 + BACOVA_04603 0.31 -1.4
551,933 - BACOVA_04603 0.31 +0.9
551,933 - BACOVA_04603 0.31 -3.3
551,985 - BACOVA_04603 0.34 -3.9
551,988 - BACOVA_04603 0.35 -4.3
551,988 - BACOVA_04603 0.35 -3.0
551,994 - BACOVA_04603 0.35 -3.9
551,994 - BACOVA_04603 0.35 -1.4
552,034 + BACOVA_04603 0.38 -2.6
552,039 - BACOVA_04603 0.38 -4.0
552,177 - BACOVA_04603 0.48 -4.7
552,178 + BACOVA_04603 0.48 -2.3
552,209 + BACOVA_04603 0.50 -3.6
552,210 - BACOVA_04603 0.51 -1.9
552,295 + BACOVA_04603 0.57 -0.7
552,307 + BACOVA_04603 0.57 -2.1
552,308 - BACOVA_04603 0.58 -5.3
552,335 + BACOVA_04603 0.59 -1.1
552,335 + BACOVA_04603 0.59 -2.4
552,336 - BACOVA_04603 0.60 -3.9
552,344 + BACOVA_04603 0.60 -3.5
552,344 + BACOVA_04603 0.60 -3.5
552,344 + BACOVA_04603 0.60 -3.0
552,344 + BACOVA_04603 0.60 -3.2
552,345 - BACOVA_04603 0.60 -3.0
552,345 - BACOVA_04603 0.60 -2.1
552,346 + BACOVA_04603 0.60 -1.1
552,347 - BACOVA_04603 0.60 -4.4
552,402 - BACOVA_04603 0.64 -2.8
552,431 + BACOVA_04603 0.66 -4.4
552,432 - BACOVA_04603 0.66 -1.4
552,432 - BACOVA_04603 0.66 -1.4
552,432 - BACOVA_04603 0.66 -1.4
552,512 + BACOVA_04603 0.72 -4.3
552,513 - BACOVA_04603 0.72 -1.9
552,584 + BACOVA_04603 0.77 -4.1
552,711 - BACOVA_04603 0.86 -3.3
552,713 + BACOVA_04603 0.87 -2.1
552,713 + BACOVA_04603 0.87 -4.1
552,750 + BACOVA_04603 0.89 -3.9
552,794 + -2.8
552,813 + -3.3
552,814 - -3.1
552,826 + -4.5
552,855 - -4.5
552,882 - -1.1
552,893 + -3.4
552,893 + -0.1
552,910 - -2.0
552,924 + -1.9
552,953 - -0.1
552,953 - +0.3
553,001 + -3.8
553,020 + -0.1
553,034 + -1.4
553,034 + -1.7
553,035 - -3.2
553,038 - -2.7
553,063 + -5.1
553,079 - -0.5
553,083 + -3.0
553,101 - -3.1
553,127 + -1.9
553,168 - BACOVA_04604 0.12 -3.6
553,190 + BACOVA_04604 0.14 -2.1
553,191 - BACOVA_04604 0.14 -1.9
553,247 + BACOVA_04604 0.18 -1.1
553,248 - BACOVA_04604 0.18 -2.2
553,251 - BACOVA_04604 0.18 +0.2
553,263 - BACOVA_04604 0.19 -0.2
553,358 + BACOVA_04604 0.25 -3.5
553,358 + BACOVA_04604 0.25 +0.9
553,359 - BACOVA_04604 0.25 -1.9
553,370 + BACOVA_04604 0.26 -3.7
553,370 + BACOVA_04604 0.26 -3.6
553,371 - BACOVA_04604 0.26 -2.8
553,411 + BACOVA_04604 0.29 -0.7
553,411 + BACOVA_04604 0.29 -2.6
553,412 - BACOVA_04604 0.29 -2.6
553,412 - BACOVA_04604 0.29 -3.3
553,414 - BACOVA_04604 0.29 -3.6
553,419 - BACOVA_04604 0.29 -4.0
553,454 + BACOVA_04604 0.32 -1.4
553,454 + BACOVA_04604 0.32 -3.5
553,455 - BACOVA_04604 0.32 -3.3
553,455 - BACOVA_04604 0.32 -2.7
553,511 + BACOVA_04604 0.35 -3.9
553,511 + BACOVA_04604 0.35 -1.4
553,611 - BACOVA_04604 0.42 -4.2
553,639 - BACOVA_04604 0.44 -4.0
553,663 - BACOVA_04604 0.46 -1.7
553,694 + BACOVA_04604 0.48 -3.7
553,700 + BACOVA_04604 0.48 -4.9
553,713 - BACOVA_04604 0.49 -1.9
553,716 + BACOVA_04604 0.49 -3.1
553,717 - BACOVA_04604 0.49 -3.9
553,733 + BACOVA_04604 0.50 -3.7
553,764 - BACOVA_04604 0.52 -1.7
553,764 - BACOVA_04604 0.52 -1.9
553,796 + BACOVA_04604 0.54 -2.6
553,796 + BACOVA_04604 0.54 -2.8
553,797 - BACOVA_04604 0.55 -4.8
553,838 + BACOVA_04604 0.57 -3.0
553,838 + BACOVA_04604 0.57 -3.6
553,854 - BACOVA_04604 0.58 -3.1

Or see this region's nucleotide sequence