Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04070 and BACOVA_04071 are separated by 573 nucleotides BACOVA_04071 and BACOVA_04072 are separated by 188 nucleotides BACOVA_04072 and BACOVA_04073 are separated by 21 nucleotides
BACOVA_04070: BACOVA_04070 - ParB-like protein, at 399,743 to 400,285
_04070
BACOVA_04071: BACOVA_04071 - hypothetical protein, at 400,859 to 401,008
_04071
BACOVA_04072: BACOVA_04072 - hypothetical protein, at 401,197 to 401,562
_04072
BACOVA_04073: BACOVA_04073 - hypothetical protein, at 401,584 to 402,156
_04073
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 399.894 kb on + strand, within BACOVA_04070 at 399.894 kb on + strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.903 kb on - strand, within BACOVA_04070 at 399.903 kb on - strand, within BACOVA_04070 at 399.907 kb on + strand, within BACOVA_04070 at 399.924 kb on - strand, within BACOVA_04070 at 399.942 kb on - strand, within BACOVA_04070 at 399.951 kb on - strand, within BACOVA_04070 at 399.953 kb on - strand, within BACOVA_04070 at 399.953 kb on - strand, within BACOVA_04070 at 399.980 kb on + strand, within BACOVA_04070 at 399.983 kb on - strand, within BACOVA_04070 at 400.081 kb on + strand, within BACOVA_04070 at 400.130 kb on - strand, within BACOVA_04070 at 400.283 kb on + strand at 400.296 kb on - strand at 400.296 kb on - strand at 400.298 kb on - strand at 400.298 kb on - strand at 400.299 kb on + strand at 400.299 kb on + strand at 400.299 kb on + strand at 400.301 kb on + strand at 400.302 kb on - strand at 400.342 kb on - strand at 400.391 kb on - strand at 400.401 kb on + strand at 400.443 kb on - strand at 400.561 kb on + strand at 400.561 kb on + strand at 400.562 kb on - strand at 400.566 kb on - strand at 400.566 kb on - strand at 400.574 kb on + strand at 400.580 kb on - strand at 400.618 kb on - strand at 400.698 kb on - strand at 400.707 kb on - strand at 400.709 kb on - strand at 400.727 kb on - strand at 400.752 kb on + strand at 400.763 kb on - strand at 400.876 kb on + strand, within BACOVA_04071 at 400.879 kb on - strand, within BACOVA_04071 at 400.879 kb on - strand, within BACOVA_04071 at 400.879 kb on - strand, within BACOVA_04071 at 400.880 kb on + strand, within BACOVA_04071 at 400.936 kb on + strand, within BACOVA_04071 at 400.937 kb on - strand, within BACOVA_04071 at 400.954 kb on + strand, within BACOVA_04071 at 400.969 kb on + strand, within BACOVA_04071 at 400.969 kb on + strand, within BACOVA_04071 at 400.972 kb on + strand, within BACOVA_04071 at 400.973 kb on - strand, within BACOVA_04071 at 400.973 kb on - strand, within BACOVA_04071 at 400.976 kb on + strand, within BACOVA_04071 at 400.976 kb on + strand, within BACOVA_04071 at 400.977 kb on - strand, within BACOVA_04071 at 401.023 kb on + strand at 401.023 kb on + strand at 401.081 kb on + strand at 401.081 kb on + strand at 401.081 kb on + strand at 401.082 kb on - strand at 401.086 kb on + strand at 401.087 kb on - strand at 401.087 kb on - strand at 401.091 kb on - strand at 401.100 kb on + strand at 401.100 kb on + strand at 401.100 kb on + strand at 401.172 kb on - strand at 401.172 kb on - strand at 401.215 kb on - strand at 401.215 kb on - strand at 401.251 kb on - strand, within BACOVA_04072 at 401.291 kb on + strand, within BACOVA_04072 at 401.294 kb on - strand, within BACOVA_04072 at 401.360 kb on - strand, within BACOVA_04072 at 401.386 kb on - strand, within BACOVA_04072 at 401.386 kb on - strand, within BACOVA_04072 at 401.386 kb on - strand, within BACOVA_04072 at 401.419 kb on - strand, within BACOVA_04072 at 401.423 kb on + strand, within BACOVA_04072 at 401.424 kb on - strand, within BACOVA_04072 at 401.425 kb on + strand, within BACOVA_04072 at 401.425 kb on + strand, within BACOVA_04072 at 401.426 kb on - strand, within BACOVA_04072 at 401.426 kb on - strand, within BACOVA_04072 at 401.427 kb on + strand, within BACOVA_04072 at 401.428 kb on - strand, within BACOVA_04072 at 401.428 kb on - strand, within BACOVA_04072 at 401.431 kb on - strand, within BACOVA_04072 at 401.447 kb on + strand, within BACOVA_04072 at 401.474 kb on + strand, within BACOVA_04072 at 401.474 kb on + strand, within BACOVA_04072 at 401.475 kb on - strand, within BACOVA_04072 at 401.475 kb on - strand, within BACOVA_04072 at 401.517 kb on + strand, within BACOVA_04072 at 401.565 kb on - strand at 401.582 kb on - strand at 401.582 kb on - strand at 401.598 kb on + strand at 401.601 kb on - strand at 401.609 kb on + strand at 401.609 kb on + strand at 401.677 kb on + strand, within BACOVA_04073 at 401.678 kb on - strand, within BACOVA_04073 at 401.728 kb on - strand, within BACOVA_04073 at 401.758 kb on - strand, within BACOVA_04073 at 401.804 kb on + strand, within BACOVA_04073 at 401.888 kb on + strand, within BACOVA_04073 at 401.889 kb on - strand, within BACOVA_04073 at 401.889 kb on - strand, within BACOVA_04073 at 401.926 kb on - strand, within BACOVA_04073 at 401.926 kb on - strand, within BACOVA_04073 at 401.934 kb on + strand, within BACOVA_04073 at 401.935 kb on - strand, within BACOVA_04073 at 401.951 kb on - strand, within BACOVA_04073 at 401.976 kb on - strand, within BACOVA_04073
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 399,894 + BACOVA_04070 0.28 +0.9 399,894 + BACOVA_04070 0.28 +0.1 399,895 - BACOVA_04070 0.28 +0.8 399,895 - BACOVA_04070 0.28 +0.3 399,895 - BACOVA_04070 0.28 +0.9 399,899 + BACOVA_04070 0.29 -0.2 399,899 + BACOVA_04070 0.29 +0.5 399,899 + BACOVA_04070 0.29 -0.1 399,903 - BACOVA_04070 0.29 +0.3 399,903 - BACOVA_04070 0.29 +1.7 399,907 + BACOVA_04070 0.30 -0.4 399,924 - BACOVA_04070 0.33 +1.0 399,942 - BACOVA_04070 0.37 +0.5 399,951 - BACOVA_04070 0.38 +0.2 399,953 - BACOVA_04070 0.39 +1.0 399,953 - BACOVA_04070 0.39 -0.4 399,980 + BACOVA_04070 0.44 -0.3 399,983 - BACOVA_04070 0.44 -0.7 400,081 + BACOVA_04070 0.62 +0.7 400,130 - BACOVA_04070 0.71 -0.9 400,283 + +0.6 400,296 - +0.7 400,296 - +0.4 400,298 - -0.9 400,298 - -0.4 400,299 + +0.1 400,299 + -0.7 400,299 + -0.7 400,301 + +0.6 400,302 - -0.1 400,342 - -0.9 400,391 - -0.3 400,401 + -0.2 400,443 - -0.5 400,561 + +0.0 400,561 + -1.0 400,562 - +0.3 400,566 - +0.4 400,566 - +0.3 400,574 + -1.9 400,580 - +1.5 400,618 - -1.6 400,698 - +0.7 400,707 - +0.5 400,709 - +1.7 400,727 - +0.3 400,752 + -0.4 400,763 - +0.4 400,876 + BACOVA_04071 0.11 +0.2 400,879 - BACOVA_04071 0.13 -1.9 400,879 - BACOVA_04071 0.13 +0.7 400,879 - BACOVA_04071 0.13 -0.1 400,880 + BACOVA_04071 0.14 -0.0 400,936 + BACOVA_04071 0.51 -1.6 400,937 - BACOVA_04071 0.52 +0.1 400,954 + BACOVA_04071 0.63 +0.7 400,969 + BACOVA_04071 0.73 -2.0 400,969 + BACOVA_04071 0.73 +0.2 400,972 + BACOVA_04071 0.75 -0.6 400,973 - BACOVA_04071 0.76 -0.6 400,973 - BACOVA_04071 0.76 +1.1 400,976 + BACOVA_04071 0.78 +0.7 400,976 + BACOVA_04071 0.78 -0.9 400,977 - BACOVA_04071 0.79 +0.4 401,023 + -0.9 401,023 + -0.5 401,081 + -0.5 401,081 + +0.5 401,081 + -1.4 401,082 - +0.4 401,086 + -1.0 401,087 - +0.5 401,087 - -0.1 401,091 - +0.3 401,100 + -0.9 401,100 + -1.1 401,100 + -1.3 401,172 - +0.2 401,172 - +0.6 401,215 - -1.1 401,215 - -0.8 401,251 - BACOVA_04072 0.15 -0.7 401,291 + BACOVA_04072 0.26 -0.4 401,294 - BACOVA_04072 0.27 +0.5 401,360 - BACOVA_04072 0.45 +0.7 401,386 - BACOVA_04072 0.52 -0.0 401,386 - BACOVA_04072 0.52 -0.0 401,386 - BACOVA_04072 0.52 +1.7 401,419 - BACOVA_04072 0.61 -1.3 401,423 + BACOVA_04072 0.62 -2.6 401,424 - BACOVA_04072 0.62 +0.0 401,425 + BACOVA_04072 0.62 +0.7 401,425 + BACOVA_04072 0.62 -1.1 401,426 - BACOVA_04072 0.63 +2.3 401,426 - BACOVA_04072 0.63 -0.1 401,427 + BACOVA_04072 0.63 +1.7 401,428 - BACOVA_04072 0.63 +0.3 401,428 - BACOVA_04072 0.63 +0.1 401,431 - BACOVA_04072 0.64 -0.9 401,447 + BACOVA_04072 0.68 -1.6 401,474 + BACOVA_04072 0.76 -0.5 401,474 + BACOVA_04072 0.76 +1.5 401,475 - BACOVA_04072 0.76 -0.9 401,475 - BACOVA_04072 0.76 +0.7 401,517 + BACOVA_04072 0.87 +0.3 401,565 - -2.1 401,582 - +2.7 401,582 - +1.4 401,598 + +0.3 401,601 - +0.5 401,609 + +2.7 401,609 + +0.3 401,677 + BACOVA_04073 0.16 -1.0 401,678 - BACOVA_04073 0.16 +0.5 401,728 - BACOVA_04073 0.25 -0.9 401,758 - BACOVA_04073 0.30 +0.1 401,804 + BACOVA_04073 0.38 -1.3 401,888 + BACOVA_04073 0.53 +0.0 401,889 - BACOVA_04073 0.53 -0.3 401,889 - BACOVA_04073 0.53 -0.3 401,926 - BACOVA_04073 0.60 -0.4 401,926 - BACOVA_04073 0.60 -1.2 401,934 + BACOVA_04073 0.61 +0.1 401,935 - BACOVA_04073 0.61 -0.2 401,951 - BACOVA_04073 0.64 -1.2 401,976 - BACOVA_04073 0.68 +0.7
Or see this region's nucleotide sequence