Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03837 and BACOVA_03838 are separated by 0 nucleotides BACOVA_03838 and BACOVA_03839 are separated by 26 nucleotides BACOVA_03839 and BACOVA_03840 overlap by 11 nucleotides BACOVA_03840 and BACOVA_03841 are separated by 354 nucleotides BACOVA_03841 and BACOVA_03842 are separated by 29 nucleotides
BACOVA_03837: BACOVA_03837 - hypothetical protein, at 187,067 to 187,666
_03837
BACOVA_03838: BACOVA_03838 - hypothetical protein, at 187,667 to 187,963
_03838
BACOVA_03839: BACOVA_03839 - inner membrane protein CreD, at 187,990 to 189,342
_03839
BACOVA_03840: BACOVA_03840 - hypothetical protein, at 189,332 to 189,445
_03840
BACOVA_03841: BACOVA_03841 - acetyltransferase, GNAT family, at 189,800 to 190,243
_03841
BACOVA_03842: BACOVA_03842 - transcriptional regulator, HxlR family, at 190,273 to 190,623
_03842
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -2
-1
0
1
2 at 187.000 kb on + strand at 187.072 kb on + strand at 187.144 kb on - strand, within BACOVA_03837 at 187.176 kb on - strand, within BACOVA_03837 at 187.193 kb on + strand, within BACOVA_03837 at 187.194 kb on - strand, within BACOVA_03837 at 187.194 kb on - strand, within BACOVA_03837 at 187.194 kb on - strand, within BACOVA_03837 at 187.202 kb on - strand, within BACOVA_03837 at 187.231 kb on - strand, within BACOVA_03837 at 187.231 kb on - strand, within BACOVA_03837 at 187.316 kb on - strand, within BACOVA_03837 at 187.433 kb on + strand, within BACOVA_03837 at 187.433 kb on + strand, within BACOVA_03837 at 187.464 kb on + strand, within BACOVA_03837 at 187.469 kb on + strand, within BACOVA_03837 at 187.477 kb on - strand, within BACOVA_03837 at 187.518 kb on + strand, within BACOVA_03837 at 187.518 kb on + strand, within BACOVA_03837 at 187.519 kb on - strand, within BACOVA_03837 at 187.519 kb on - strand, within BACOVA_03837 at 187.525 kb on - strand, within BACOVA_03837 at 187.525 kb on - strand, within BACOVA_03837 at 187.529 kb on + strand, within BACOVA_03837 at 187.530 kb on - strand, within BACOVA_03837 at 187.672 kb on - strand at 187.672 kb on - strand at 187.672 kb on - strand at 187.690 kb on + strand at 187.691 kb on - strand at 187.693 kb on + strand at 187.693 kb on + strand at 187.840 kb on + strand, within BACOVA_03838 at 187.840 kb on + strand, within BACOVA_03838 at 187.850 kb on - strand, within BACOVA_03838 at 187.927 kb on + strand, within BACOVA_03838 at 187.928 kb on - strand, within BACOVA_03838 at 187.990 kb on - strand at 188.037 kb on + strand at 188.037 kb on + strand at 188.038 kb on - strand at 188.091 kb on - strand at 188.170 kb on - strand, within BACOVA_03839 at 188.180 kb on + strand, within BACOVA_03839 at 188.222 kb on - strand, within BACOVA_03839 at 188.277 kb on + strand, within BACOVA_03839 at 188.278 kb on - strand, within BACOVA_03839 at 188.327 kb on + strand, within BACOVA_03839 at 188.328 kb on - strand, within BACOVA_03839 at 188.352 kb on + strand, within BACOVA_03839 at 188.369 kb on + strand, within BACOVA_03839 at 188.369 kb on + strand, within BACOVA_03839 at 188.570 kb on + strand, within BACOVA_03839 at 188.571 kb on - strand, within BACOVA_03839 at 188.571 kb on - strand, within BACOVA_03839 at 188.574 kb on + strand, within BACOVA_03839 at 188.622 kb on + strand, within BACOVA_03839 at 188.635 kb on + strand, within BACOVA_03839 at 188.635 kb on + strand, within BACOVA_03839 at 188.680 kb on - strand, within BACOVA_03839 at 188.692 kb on - strand, within BACOVA_03839 at 188.706 kb on - strand, within BACOVA_03839 at 188.749 kb on + strand, within BACOVA_03839 at 188.750 kb on - strand, within BACOVA_03839 at 188.757 kb on + strand, within BACOVA_03839 at 188.807 kb on + strand, within BACOVA_03839 at 188.824 kb on + strand, within BACOVA_03839 at 188.846 kb on - strand, within BACOVA_03839 at 188.918 kb on - strand, within BACOVA_03839 at 188.963 kb on + strand, within BACOVA_03839 at 189.029 kb on - strand, within BACOVA_03839 at 189.032 kb on + strand, within BACOVA_03839 at 189.032 kb on + strand, within BACOVA_03839 at 189.039 kb on - strand, within BACOVA_03839 at 189.039 kb on - strand, within BACOVA_03839 at 189.039 kb on - strand, within BACOVA_03839 at 189.061 kb on + strand, within BACOVA_03839 at 189.062 kb on - strand, within BACOVA_03839 at 189.062 kb on - strand, within BACOVA_03839 at 189.117 kb on - strand, within BACOVA_03839 at 189.132 kb on + strand, within BACOVA_03839 at 189.132 kb on + strand, within BACOVA_03839 at 189.133 kb on - strand, within BACOVA_03839 at 189.135 kb on + strand, within BACOVA_03839 at 189.136 kb on - strand, within BACOVA_03839 at 189.138 kb on - strand, within BACOVA_03839 at 189.154 kb on - strand, within BACOVA_03839 at 189.154 kb on - strand, within BACOVA_03839 at 189.154 kb on - strand, within BACOVA_03839 at 189.188 kb on + strand, within BACOVA_03839 at 189.189 kb on - strand, within BACOVA_03839 at 189.210 kb on + strand at 189.211 kb on - strand at 189.219 kb on + strand at 189.220 kb on - strand at 189.223 kb on + strand at 189.223 kb on + strand at 189.275 kb on + strand at 189.276 kb on - strand at 189.300 kb on - strand at 189.300 kb on - strand at 189.307 kb on + strand at 189.323 kb on + strand at 189.324 kb on - strand at 189.411 kb on - strand, within BACOVA_03840 at 189.457 kb on - strand at 189.472 kb on - strand at 189.477 kb on + strand at 189.480 kb on + strand at 189.480 kb on + strand at 189.481 kb on - strand at 189.481 kb on - strand at 189.486 kb on + strand at 189.488 kb on + strand at 189.489 kb on - strand at 189.489 kb on - strand at 189.489 kb on - strand at 189.489 kb on - strand at 189.494 kb on - strand at 189.579 kb on - strand at 189.610 kb on + strand at 189.610 kb on + strand at 189.610 kb on + strand at 189.628 kb on - strand at 189.643 kb on + strand at 189.643 kb on + strand at 189.649 kb on + strand at 189.668 kb on - strand at 189.697 kb on + strand at 189.698 kb on - strand at 189.698 kb on - strand at 189.702 kb on + strand at 189.711 kb on - strand at 189.713 kb on - strand at 189.716 kb on + strand at 189.732 kb on - strand at 189.819 kb on + strand at 189.819 kb on + strand at 189.819 kb on + strand at 189.819 kb on + strand at 189.820 kb on - strand at 189.820 kb on - strand at 189.821 kb on + strand at 189.821 kb on + strand at 189.822 kb on - strand at 189.827 kb on - strand at 189.853 kb on - strand, within BACOVA_03841 at 189.868 kb on - strand, within BACOVA_03841 at 189.868 kb on - strand, within BACOVA_03841 at 189.945 kb on - strand, within BACOVA_03841 at 189.956 kb on - strand, within BACOVA_03841 at 189.988 kb on - strand, within BACOVA_03841 at 189.991 kb on - strand, within BACOVA_03841 at 190.057 kb on + strand, within BACOVA_03841 at 190.057 kb on + strand, within BACOVA_03841 at 190.071 kb on + strand, within BACOVA_03841 at 190.075 kb on + strand, within BACOVA_03841 at 190.097 kb on + strand, within BACOVA_03841 at 190.126 kb on - strand, within BACOVA_03841 at 190.194 kb on - strand, within BACOVA_03841 at 190.235 kb on + strand at 190.244 kb on - strand at 190.305 kb on + strand at 190.312 kb on - strand, within BACOVA_03842
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 187,000 + +0.3 187,072 + +0.8 187,144 - BACOVA_03837 0.13 -0.6 187,176 - BACOVA_03837 0.18 -0.2 187,193 + BACOVA_03837 0.21 +0.5 187,194 - BACOVA_03837 0.21 -0.0 187,194 - BACOVA_03837 0.21 -1.1 187,194 - BACOVA_03837 0.21 -0.6 187,202 - BACOVA_03837 0.23 +0.6 187,231 - BACOVA_03837 0.27 +1.1 187,231 - BACOVA_03837 0.27 +0.4 187,316 - BACOVA_03837 0.41 -0.4 187,433 + BACOVA_03837 0.61 -0.8 187,433 + BACOVA_03837 0.61 -0.6 187,464 + BACOVA_03837 0.66 -0.8 187,469 + BACOVA_03837 0.67 +0.5 187,477 - BACOVA_03837 0.68 +0.6 187,518 + BACOVA_03837 0.75 +1.0 187,518 + BACOVA_03837 0.75 -0.2 187,519 - BACOVA_03837 0.75 +1.2 187,519 - BACOVA_03837 0.75 -0.2 187,525 - BACOVA_03837 0.76 +0.8 187,525 - BACOVA_03837 0.76 +0.1 187,529 + BACOVA_03837 0.77 -0.2 187,530 - BACOVA_03837 0.77 +1.9 187,672 - -0.5 187,672 - +0.2 187,672 - +0.0 187,690 + -0.5 187,691 - -0.2 187,693 + +0.5 187,693 + +0.2 187,840 + BACOVA_03838 0.58 -0.5 187,840 + BACOVA_03838 0.58 -1.0 187,850 - BACOVA_03838 0.62 -1.2 187,927 + BACOVA_03838 0.88 -1.2 187,928 - BACOVA_03838 0.88 -0.3 187,990 - +0.8 188,037 + -0.9 188,037 + +0.8 188,038 - -0.2 188,091 - -2.1 188,170 - BACOVA_03839 0.13 -1.0 188,180 + BACOVA_03839 0.14 -0.6 188,222 - BACOVA_03839 0.17 -0.8 188,277 + BACOVA_03839 0.21 +0.8 188,278 - BACOVA_03839 0.21 -0.3 188,327 + BACOVA_03839 0.25 -0.6 188,328 - BACOVA_03839 0.25 -0.4 188,352 + BACOVA_03839 0.27 +0.1 188,369 + BACOVA_03839 0.28 -1.2 188,369 + BACOVA_03839 0.28 +0.4 188,570 + BACOVA_03839 0.43 +0.8 188,571 - BACOVA_03839 0.43 +0.8 188,571 - BACOVA_03839 0.43 +0.7 188,574 + BACOVA_03839 0.43 +1.0 188,622 + BACOVA_03839 0.47 +1.6 188,635 + BACOVA_03839 0.48 -0.5 188,635 + BACOVA_03839 0.48 -1.1 188,680 - BACOVA_03839 0.51 +2.4 188,692 - BACOVA_03839 0.52 +2.2 188,706 - BACOVA_03839 0.53 -1.2 188,749 + BACOVA_03839 0.56 -0.6 188,750 - BACOVA_03839 0.56 +0.9 188,757 + BACOVA_03839 0.57 -0.6 188,807 + BACOVA_03839 0.60 +1.0 188,824 + BACOVA_03839 0.62 +0.8 188,846 - BACOVA_03839 0.63 +0.2 188,918 - BACOVA_03839 0.69 -2.2 188,963 + BACOVA_03839 0.72 +0.2 189,029 - BACOVA_03839 0.77 -0.6 189,032 + BACOVA_03839 0.77 +0.8 189,032 + BACOVA_03839 0.77 -1.5 189,039 - BACOVA_03839 0.78 -0.2 189,039 - BACOVA_03839 0.78 +0.1 189,039 - BACOVA_03839 0.78 -0.2 189,061 + BACOVA_03839 0.79 +1.1 189,062 - BACOVA_03839 0.79 +2.3 189,062 - BACOVA_03839 0.79 -0.6 189,117 - BACOVA_03839 0.83 +0.8 189,132 + BACOVA_03839 0.84 +0.5 189,132 + BACOVA_03839 0.84 +1.0 189,133 - BACOVA_03839 0.84 +0.8 189,135 + BACOVA_03839 0.85 -0.4 189,136 - BACOVA_03839 0.85 +0.9 189,138 - BACOVA_03839 0.85 -0.1 189,154 - BACOVA_03839 0.86 +2.5 189,154 - BACOVA_03839 0.86 +1.0 189,154 - BACOVA_03839 0.86 -0.8 189,188 + BACOVA_03839 0.89 -0.0 189,189 - BACOVA_03839 0.89 +1.2 189,210 + -0.2 189,211 - +0.8 189,219 + -0.3 189,220 - -1.1 189,223 + +0.8 189,223 + -0.8 189,275 + -1.2 189,276 - +1.2 189,300 - -0.6 189,300 - -0.5 189,307 + -0.1 189,323 + +0.8 189,324 - -0.5 189,411 - BACOVA_03840 0.69 +0.1 189,457 - +0.8 189,472 - -0.6 189,477 + +0.4 189,480 + +1.8 189,480 + +0.3 189,481 - +1.2 189,481 - -0.2 189,486 + +0.8 189,488 + -1.2 189,489 - +0.0 189,489 - +0.2 189,489 - -0.7 189,489 - +0.8 189,494 - -0.0 189,579 - -0.1 189,610 + +0.9 189,610 + +0.8 189,610 + +1.2 189,628 - +0.2 189,643 + +0.8 189,643 + -0.2 189,649 + -0.8 189,668 - +1.3 189,697 + +1.2 189,698 - +0.4 189,698 - -0.3 189,702 + +0.9 189,711 - -2.2 189,713 - -0.1 189,716 + -1.5 189,732 - -0.5 189,819 + -0.8 189,819 + -0.5 189,819 + -0.1 189,819 + +0.8 189,820 - -0.5 189,820 - +0.9 189,821 + -0.6 189,821 + -1.4 189,822 - -1.0 189,827 - -0.2 189,853 - BACOVA_03841 0.12 -0.2 189,868 - BACOVA_03841 0.15 -0.1 189,868 - BACOVA_03841 0.15 +0.8 189,945 - BACOVA_03841 0.33 +0.1 189,956 - BACOVA_03841 0.35 -0.2 189,988 - BACOVA_03841 0.42 +0.8 189,991 - BACOVA_03841 0.43 -0.9 190,057 + BACOVA_03841 0.58 +0.2 190,057 + BACOVA_03841 0.58 -0.5 190,071 + BACOVA_03841 0.61 -2.1 190,075 + BACOVA_03841 0.62 -0.1 190,097 + BACOVA_03841 0.67 -0.2 190,126 - BACOVA_03841 0.73 -0.1 190,194 - BACOVA_03841 0.89 -1.1 190,235 + +0.8 190,244 - -0.3 190,305 + -0.8 190,312 - BACOVA_03842 0.11 +0.8
Or see this region's nucleotide sequence