Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03678

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03676 and BACOVA_03677 are separated by 3 nucleotidesBACOVA_03677 and BACOVA_03678 are separated by 9 nucleotidesBACOVA_03678 and BACOVA_03679 are separated by 4 nucleotidesBACOVA_03679 and BACOVA_03680 are separated by 21 nucleotides BACOVA_03676: BACOVA_03676 - hypothetical protein, at 2,732 to 3,841 _03676 BACOVA_03677: BACOVA_03677 - bacterial transferase hexapeptide repeat protein, at 3,845 to 4,369 _03677 BACOVA_03678: BACOVA_03678 - polysaccharide biosynthesis protein, at 4,379 to 5,833 _03678 BACOVA_03679: BACOVA_03679 - branched-chain-amino-acid transaminase, at 5,838 to 6,767 _03679 BACOVA_03680: BACOVA_03680 - Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein, at 6,789 to 8,015 _03680 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 3.387 kb on - strand, within BACOVA_03676at 3.390 kb on + strand, within BACOVA_03676at 3.390 kb on + strand, within BACOVA_03676at 3.403 kb on + strand, within BACOVA_03676at 3.408 kb on - strand, within BACOVA_03676at 3.457 kb on + strand, within BACOVA_03676at 3.459 kb on + strand, within BACOVA_03676at 3.482 kb on - strand, within BACOVA_03676at 3.504 kb on + strand, within BACOVA_03676at 3.537 kb on + strand, within BACOVA_03676at 3.540 kb on + strand, within BACOVA_03676at 3.541 kb on - strand, within BACOVA_03676at 3.542 kb on + strand, within BACOVA_03676at 3.583 kb on + strand, within BACOVA_03676at 3.584 kb on - strand, within BACOVA_03676at 3.584 kb on - strand, within BACOVA_03676at 3.643 kb on + strand, within BACOVA_03676at 3.644 kb on - strand, within BACOVA_03676at 3.653 kb on + strand, within BACOVA_03676at 3.676 kb on + strand, within BACOVA_03676at 3.681 kb on + strand, within BACOVA_03676at 3.682 kb on - strand, within BACOVA_03676at 3.712 kb on - strand, within BACOVA_03676at 3.736 kb on + strandat 3.737 kb on - strandat 3.888 kb on - strandat 3.889 kb on + strandat 3.898 kb on - strand, within BACOVA_03677at 3.925 kb on + strand, within BACOVA_03677at 3.938 kb on + strand, within BACOVA_03677at 3.939 kb on - strand, within BACOVA_03677at 3.939 kb on - strand, within BACOVA_03677at 3.939 kb on - strand, within BACOVA_03677at 3.939 kb on - strand, within BACOVA_03677at 3.941 kb on - strand, within BACOVA_03677at 3.941 kb on - strand, within BACOVA_03677at 3.970 kb on + strand, within BACOVA_03677at 3.978 kb on - strand, within BACOVA_03677at 3.978 kb on - strand, within BACOVA_03677at 3.995 kb on + strand, within BACOVA_03677at 3.996 kb on - strand, within BACOVA_03677at 4.033 kb on - strand, within BACOVA_03677at 4.079 kb on - strand, within BACOVA_03677at 4.091 kb on - strand, within BACOVA_03677at 4.130 kb on + strand, within BACOVA_03677at 4.131 kb on - strand, within BACOVA_03677at 4.131 kb on - strand, within BACOVA_03677at 4.133 kb on - strand, within BACOVA_03677at 4.225 kb on + strand, within BACOVA_03677at 4.225 kb on + strand, within BACOVA_03677at 4.225 kb on + strand, within BACOVA_03677at 4.226 kb on - strand, within BACOVA_03677at 4.226 kb on - strand, within BACOVA_03677at 4.258 kb on + strand, within BACOVA_03677at 4.269 kb on + strand, within BACOVA_03677at 4.269 kb on + strand, within BACOVA_03677at 4.270 kb on - strand, within BACOVA_03677at 4.273 kb on + strand, within BACOVA_03677at 4.274 kb on - strand, within BACOVA_03677at 4.316 kb on + strand, within BACOVA_03677at 4.316 kb on + strand, within BACOVA_03677at 4.318 kb on + strandat 4.339 kb on + strandat 4.345 kb on - strandat 4.346 kb on + strandat 4.347 kb on - strandat 4.369 kb on + strandat 4.372 kb on + strandat 4.385 kb on - strandat 4.389 kb on - strandat 4.439 kb on + strandat 4.439 kb on + strandat 4.441 kb on + strandat 4.443 kb on + strandat 4.443 kb on + strandat 4.473 kb on - strandat 4.475 kb on + strandat 4.498 kb on + strandat 4.540 kb on + strand, within BACOVA_03678at 4.570 kb on + strand, within BACOVA_03678at 4.571 kb on - strand, within BACOVA_03678at 4.620 kb on - strand, within BACOVA_03678at 4.653 kb on + strand, within BACOVA_03678at 4.664 kb on + strand, within BACOVA_03678at 4.722 kb on + strand, within BACOVA_03678at 4.738 kb on + strand, within BACOVA_03678at 4.798 kb on + strand, within BACOVA_03678at 4.798 kb on + strand, within BACOVA_03678at 4.802 kb on - strand, within BACOVA_03678at 4.860 kb on - strand, within BACOVA_03678at 4.878 kb on + strand, within BACOVA_03678at 4.879 kb on - strand, within BACOVA_03678at 4.882 kb on + strand, within BACOVA_03678at 4.883 kb on - strand, within BACOVA_03678at 4.905 kb on - strand, within BACOVA_03678at 4.948 kb on + strand, within BACOVA_03678at 4.980 kb on + strand, within BACOVA_03678at 4.994 kb on - strand, within BACOVA_03678at 5.041 kb on + strand, within BACOVA_03678at 5.045 kb on + strand, within BACOVA_03678at 5.046 kb on - strand, within BACOVA_03678at 5.054 kb on - strand, within BACOVA_03678at 5.074 kb on + strand, within BACOVA_03678at 5.098 kb on + strand, within BACOVA_03678at 5.098 kb on + strand, within BACOVA_03678at 5.193 kb on + strand, within BACOVA_03678at 5.326 kb on + strand, within BACOVA_03678at 5.379 kb on - strand, within BACOVA_03678at 5.399 kb on + strand, within BACOVA_03678at 5.433 kb on - strand, within BACOVA_03678at 5.486 kb on + strand, within BACOVA_03678at 5.496 kb on - strand, within BACOVA_03678at 5.496 kb on - strand, within BACOVA_03678at 5.509 kb on + strand, within BACOVA_03678at 5.520 kb on + strand, within BACOVA_03678at 5.520 kb on + strand, within BACOVA_03678at 5.552 kb on - strand, within BACOVA_03678at 5.569 kb on + strand, within BACOVA_03678at 5.598 kb on - strand, within BACOVA_03678at 5.621 kb on + strand, within BACOVA_03678at 5.642 kb on + strand, within BACOVA_03678at 5.643 kb on - strand, within BACOVA_03678at 5.677 kb on + strand, within BACOVA_03678at 5.677 kb on + strand, within BACOVA_03678at 5.678 kb on - strand, within BACOVA_03678at 5.678 kb on - strand, within BACOVA_03678at 5.708 kb on + strandat 5.729 kb on + strandat 5.781 kb on - strandat 5.814 kb on - strandat 5.844 kb on + strandat 5.844 kb on + strandat 5.845 kb on - strandat 5.867 kb on + strandat 5.900 kb on - strandat 5.900 kb on - strandat 5.906 kb on + strandat 5.979 kb on + strand, within BACOVA_03679at 5.980 kb on - strand, within BACOVA_03679at 6.021 kb on - strand, within BACOVA_03679at 6.022 kb on + strand, within BACOVA_03679at 6.022 kb on + strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.107 kb on + strand, within BACOVA_03679at 6.118 kb on - strand, within BACOVA_03679at 6.118 kb on - strand, within BACOVA_03679at 6.192 kb on + strand, within BACOVA_03679at 6.218 kb on + strand, within BACOVA_03679at 6.218 kb on + strand, within BACOVA_03679at 6.224 kb on + strand, within BACOVA_03679at 6.224 kb on + strand, within BACOVA_03679at 6.225 kb on - strand, within BACOVA_03679at 6.229 kb on + strand, within BACOVA_03679at 6.274 kb on + strand, within BACOVA_03679at 6.274 kb on + strand, within BACOVA_03679at 6.338 kb on + strand, within BACOVA_03679at 6.338 kb on + strand, within BACOVA_03679at 6.339 kb on - strand, within BACOVA_03679at 6.364 kb on + strand, within BACOVA_03679at 6.392 kb on + strand, within BACOVA_03679at 6.485 kb on - strand, within BACOVA_03679at 6.536 kb on + strand, within BACOVA_03679at 6.539 kb on - strand, within BACOVA_03679at 6.611 kb on - strand, within BACOVA_03679at 6.611 kb on - strand, within BACOVA_03679at 6.681 kb on - strandat 6.746 kb on + strandat 6.750 kb on - strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.754 kb on - strandat 6.767 kb on + strandat 6.773 kb on + strandat 6.773 kb on + strandat 6.787 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
remove
3,387 - BACOVA_03676 0.59 +0.3
3,390 + BACOVA_03676 0.59 +1.4
3,390 + BACOVA_03676 0.59 +0.0
3,403 + BACOVA_03676 0.60 +1.5
3,408 - BACOVA_03676 0.61 +0.1
3,457 + BACOVA_03676 0.65 -0.2
3,459 + BACOVA_03676 0.65 +0.9
3,482 - BACOVA_03676 0.68 -0.2
3,504 + BACOVA_03676 0.70 +0.8
3,537 + BACOVA_03676 0.73 -1.1
3,540 + BACOVA_03676 0.73 +0.4
3,541 - BACOVA_03676 0.73 +1.0
3,542 + BACOVA_03676 0.73 -0.2
3,583 + BACOVA_03676 0.77 +0.8
3,584 - BACOVA_03676 0.77 +0.3
3,584 - BACOVA_03676 0.77 -2.1
3,643 + BACOVA_03676 0.82 +0.8
3,644 - BACOVA_03676 0.82 +0.3
3,653 + BACOVA_03676 0.83 +0.3
3,676 + BACOVA_03676 0.85 -0.1
3,681 + BACOVA_03676 0.85 +0.9
3,682 - BACOVA_03676 0.86 +0.2
3,712 - BACOVA_03676 0.88 +0.8
3,736 + -0.4
3,737 - -2.1
3,888 - +1.5
3,889 + +1.3
3,898 - BACOVA_03677 0.10 -0.5
3,925 + BACOVA_03677 0.15 -0.5
3,938 + BACOVA_03677 0.18 +1.0
3,939 - BACOVA_03677 0.18 +0.8
3,939 - BACOVA_03677 0.18 +0.9
3,939 - BACOVA_03677 0.18 +0.2
3,939 - BACOVA_03677 0.18 -1.2
3,941 - BACOVA_03677 0.18 +0.0
3,941 - BACOVA_03677 0.18 +0.0
3,970 + BACOVA_03677 0.24 +0.8
3,978 - BACOVA_03677 0.25 -0.7
3,978 - BACOVA_03677 0.25 -0.1
3,995 + BACOVA_03677 0.29 +0.8
3,996 - BACOVA_03677 0.29 +2.3
4,033 - BACOVA_03677 0.36 -1.2
4,079 - BACOVA_03677 0.45 -0.1
4,091 - BACOVA_03677 0.47 -2.1
4,130 + BACOVA_03677 0.54 +2.6
4,131 - BACOVA_03677 0.54 -0.7
4,131 - BACOVA_03677 0.54 +0.2
4,133 - BACOVA_03677 0.55 -1.2
4,225 + BACOVA_03677 0.72 -0.6
4,225 + BACOVA_03677 0.72 +0.2
4,225 + BACOVA_03677 0.72 +0.5
4,226 - BACOVA_03677 0.73 +1.0
4,226 - BACOVA_03677 0.73 -0.6
4,258 + BACOVA_03677 0.79 -0.2
4,269 + BACOVA_03677 0.81 +0.0
4,269 + BACOVA_03677 0.81 +0.0
4,270 - BACOVA_03677 0.81 -1.2
4,273 + BACOVA_03677 0.82 +0.9
4,274 - BACOVA_03677 0.82 +0.4
4,316 + BACOVA_03677 0.90 -0.5
4,316 + BACOVA_03677 0.90 -0.2
4,318 + -0.2
4,339 + -0.1
4,345 - +1.4
4,346 + +1.4
4,347 - -0.8
4,369 + -1.2
4,372 + +2.1
4,385 - +2.0
4,389 - +1.2
4,439 + +0.4
4,439 + +0.8
4,441 + +1.9
4,443 + +1.2
4,443 + -0.6
4,473 - +1.5
4,475 + -0.0
4,498 + +0.8
4,540 + BACOVA_03678 0.11 +1.2
4,570 + BACOVA_03678 0.13 +0.3
4,571 - BACOVA_03678 0.13 -0.6
4,620 - BACOVA_03678 0.17 +0.8
4,653 + BACOVA_03678 0.19 -1.2
4,664 + BACOVA_03678 0.20 +0.3
4,722 + BACOVA_03678 0.24 -0.2
4,738 + BACOVA_03678 0.25 +0.8
4,798 + BACOVA_03678 0.29 +1.4
4,798 + BACOVA_03678 0.29 +0.8
4,802 - BACOVA_03678 0.29 -0.8
4,860 - BACOVA_03678 0.33 +1.3
4,878 + BACOVA_03678 0.34 +1.3
4,879 - BACOVA_03678 0.34 +1.1
4,882 + BACOVA_03678 0.35 +1.2
4,883 - BACOVA_03678 0.35 +0.3
4,905 - BACOVA_03678 0.36 +0.2
4,948 + BACOVA_03678 0.39 +1.8
4,980 + BACOVA_03678 0.41 -1.6
4,994 - BACOVA_03678 0.42 +0.8
5,041 + BACOVA_03678 0.45 +0.5
5,045 + BACOVA_03678 0.46 +0.3
5,046 - BACOVA_03678 0.46 +0.8
5,054 - BACOVA_03678 0.46 -0.8
5,074 + BACOVA_03678 0.48 +1.1
5,098 + BACOVA_03678 0.49 +1.0
5,098 + BACOVA_03678 0.49 +0.8
5,193 + BACOVA_03678 0.56 -0.8
5,326 + BACOVA_03678 0.65 +0.1
5,379 - BACOVA_03678 0.69 +1.1
5,399 + BACOVA_03678 0.70 +0.1
5,433 - BACOVA_03678 0.72 -0.4
5,486 + BACOVA_03678 0.76 -0.2
5,496 - BACOVA_03678 0.77 -0.8
5,496 - BACOVA_03678 0.77 -0.2
5,509 + BACOVA_03678 0.78 -0.5
5,520 + BACOVA_03678 0.78 -1.2
5,520 + BACOVA_03678 0.78 +1.8
5,552 - BACOVA_03678 0.81 +2.0
5,569 + BACOVA_03678 0.82 -1.2
5,598 - BACOVA_03678 0.84 -0.4
5,621 + BACOVA_03678 0.85 +0.4
5,642 + BACOVA_03678 0.87 +0.6
5,643 - BACOVA_03678 0.87 -1.1
5,677 + BACOVA_03678 0.89 -1.8
5,677 + BACOVA_03678 0.89 +0.3
5,678 - BACOVA_03678 0.89 +0.5
5,678 - BACOVA_03678 0.89 +0.6
5,708 + +1.4
5,729 + +0.8
5,781 - +0.0
5,814 - +0.7
5,844 + +1.3
5,844 + +1.3
5,845 - -1.1
5,867 + -0.2
5,900 - +1.1
5,900 - +1.2
5,906 + +1.8
5,979 + BACOVA_03679 0.15 +0.1
5,980 - BACOVA_03679 0.15 +0.6
6,021 - BACOVA_03679 0.20 -0.5
6,022 + BACOVA_03679 0.20 -0.8
6,022 + BACOVA_03679 0.20 -0.5
6,023 - BACOVA_03679 0.20 +0.8
6,023 - BACOVA_03679 0.20 +1.0
6,023 - BACOVA_03679 0.20 -0.8
6,023 - BACOVA_03679 0.20 +2.4
6,023 - BACOVA_03679 0.20 -0.2
6,023 - BACOVA_03679 0.20 -0.2
6,023 - BACOVA_03679 0.20 -0.2
6,107 + BACOVA_03679 0.29 +0.3
6,118 - BACOVA_03679 0.30 +1.5
6,118 - BACOVA_03679 0.30 -0.8
6,192 + BACOVA_03679 0.38 -1.2
6,218 + BACOVA_03679 0.41 +1.4
6,218 + BACOVA_03679 0.41 -0.2
6,224 + BACOVA_03679 0.42 +0.8
6,224 + BACOVA_03679 0.42 +1.2
6,225 - BACOVA_03679 0.42 +0.0
6,229 + BACOVA_03679 0.42 +0.2
6,274 + BACOVA_03679 0.47 -0.6
6,274 + BACOVA_03679 0.47 -0.6
6,338 + BACOVA_03679 0.54 +0.2
6,338 + BACOVA_03679 0.54 +1.5
6,339 - BACOVA_03679 0.54 +0.3
6,364 + BACOVA_03679 0.57 -0.6
6,392 + BACOVA_03679 0.60 +0.1
6,485 - BACOVA_03679 0.70 +1.4
6,536 + BACOVA_03679 0.75 -0.8
6,539 - BACOVA_03679 0.75 +0.8
6,611 - BACOVA_03679 0.83 +0.8
6,611 - BACOVA_03679 0.83 -1.2
6,681 - -1.2
6,746 + +0.3
6,750 - +0.9
6,753 + +0.8
6,753 + -0.7
6,754 - -0.5
6,767 + +0.4
6,773 + +0.3
6,773 + +0.2
6,787 + -0.5

Or see this region's nucleotide sequence