Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01383

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01382 and BACOVA_01383 are separated by 3 nucleotidesBACOVA_01383 and BACOVA_01384 are separated by 63 nucleotides BACOVA_01382: BACOVA_01382 - hypothetical protein, at 44,163 to 45,599 _01382 BACOVA_01383: BACOVA_01383 - hypothetical protein, at 45,603 to 46,166 _01383 BACOVA_01384: BACOVA_01384 - hypothetical protein, at 46,230 to 47,708 _01384 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1at 44.664 kb on + strand, within BACOVA_01382at 44.665 kb on - strand, within BACOVA_01382at 44.671 kb on + strand, within BACOVA_01382at 44.671 kb on + strand, within BACOVA_01382at 44.727 kb on + strand, within BACOVA_01382at 44.735 kb on + strand, within BACOVA_01382at 44.788 kb on + strand, within BACOVA_01382at 44.794 kb on - strand, within BACOVA_01382at 44.880 kb on + strand, within BACOVA_01382at 44.881 kb on - strand, within BACOVA_01382at 44.911 kb on + strand, within BACOVA_01382at 44.935 kb on + strand, within BACOVA_01382at 44.936 kb on - strand, within BACOVA_01382at 44.939 kb on - strand, within BACOVA_01382at 44.984 kb on + strand, within BACOVA_01382at 44.984 kb on + strand, within BACOVA_01382at 45.074 kb on - strand, within BACOVA_01382at 45.280 kb on + strand, within BACOVA_01382at 45.311 kb on - strand, within BACOVA_01382at 45.316 kb on + strand, within BACOVA_01382at 45.317 kb on - strand, within BACOVA_01382at 45.355 kb on + strand, within BACOVA_01382at 45.487 kb on + strandat 45.488 kb on + strandat 45.489 kb on - strandat 45.489 kb on - strandat 45.503 kb on + strandat 45.615 kb on + strandat 45.641 kb on + strandat 45.695 kb on + strand, within BACOVA_01383at 45.731 kb on + strand, within BACOVA_01383at 45.731 kb on + strand, within BACOVA_01383at 45.750 kb on - strand, within BACOVA_01383at 45.791 kb on + strand, within BACOVA_01383at 45.792 kb on - strand, within BACOVA_01383at 45.796 kb on + strand, within BACOVA_01383at 45.796 kb on + strand, within BACOVA_01383at 45.800 kb on + strand, within BACOVA_01383at 45.827 kb on + strand, within BACOVA_01383at 45.861 kb on - strand, within BACOVA_01383at 45.873 kb on + strand, within BACOVA_01383at 45.873 kb on + strand, within BACOVA_01383at 45.874 kb on - strand, within BACOVA_01383at 45.874 kb on - strand, within BACOVA_01383at 45.880 kb on + strand, within BACOVA_01383at 45.891 kb on - strand, within BACOVA_01383at 45.908 kb on + strand, within BACOVA_01383at 45.941 kb on - strand, within BACOVA_01383at 45.999 kb on - strand, within BACOVA_01383at 46.032 kb on - strand, within BACOVA_01383at 46.073 kb on + strand, within BACOVA_01383at 46.073 kb on + strand, within BACOVA_01383at 46.073 kb on + strand, within BACOVA_01383at 46.074 kb on - strand, within BACOVA_01383at 46.122 kb on + strandat 46.125 kb on - strandat 46.129 kb on - strandat 46.142 kb on + strandat 46.143 kb on - strandat 46.149 kb on + strandat 46.149 kb on + strandat 46.197 kb on + strandat 46.197 kb on + strandat 46.197 kb on + strandat 46.198 kb on - strandat 46.231 kb on + strandat 46.232 kb on - strandat 46.307 kb on + strandat 46.330 kb on + strandat 46.331 kb on - strandat 46.335 kb on - strandat 46.359 kb on - strandat 46.387 kb on - strand, within BACOVA_01384at 46.409 kb on + strand, within BACOVA_01384at 46.513 kb on + strand, within BACOVA_01384at 46.590 kb on - strand, within BACOVA_01384at 46.590 kb on - strand, within BACOVA_01384at 46.673 kb on + strand, within BACOVA_01384at 46.673 kb on + strand, within BACOVA_01384at 46.674 kb on - strand, within BACOVA_01384at 46.754 kb on - strand, within BACOVA_01384at 46.792 kb on + strand, within BACOVA_01384at 46.792 kb on + strand, within BACOVA_01384at 46.792 kb on + strand, within BACOVA_01384at 46.792 kb on + strand, within BACOVA_01384at 46.792 kb on + strand, within BACOVA_01384at 46.858 kb on + strand, within BACOVA_01384at 46.958 kb on - strand, within BACOVA_01384at 46.982 kb on + strand, within BACOVA_01384at 47.107 kb on + strand, within BACOVA_01384at 47.132 kb on - strand, within BACOVA_01384

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
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44,664 + BACOVA_01382 0.35 +0.8
44,665 - BACOVA_01382 0.35 -0.9
44,671 + BACOVA_01382 0.35 -0.3
44,671 + BACOVA_01382 0.35 +1.1
44,727 + BACOVA_01382 0.39 -0.0
44,735 + BACOVA_01382 0.40 -0.1
44,788 + BACOVA_01382 0.43 -0.7
44,794 - BACOVA_01382 0.44 +0.1
44,880 + BACOVA_01382 0.50 +0.5
44,881 - BACOVA_01382 0.50 -0.4
44,911 + BACOVA_01382 0.52 +0.0
44,935 + BACOVA_01382 0.54 -1.7
44,936 - BACOVA_01382 0.54 -1.2
44,939 - BACOVA_01382 0.54 +1.5
44,984 + BACOVA_01382 0.57 +0.8
44,984 + BACOVA_01382 0.57 -0.5
45,074 - BACOVA_01382 0.63 -1.9
45,280 + BACOVA_01382 0.78 -1.3
45,311 - BACOVA_01382 0.80 -0.0
45,316 + BACOVA_01382 0.80 -0.4
45,317 - BACOVA_01382 0.80 -1.2
45,355 + BACOVA_01382 0.83 +0.1
45,487 + -0.7
45,488 + -0.4
45,489 - +0.3
45,489 - +0.5
45,503 + -0.0
45,615 + -1.7
45,641 + +0.5
45,695 + BACOVA_01383 0.16 -0.2
45,731 + BACOVA_01383 0.23 +0.3
45,731 + BACOVA_01383 0.23 -0.2
45,750 - BACOVA_01383 0.26 -0.2
45,791 + BACOVA_01383 0.33 -0.4
45,792 - BACOVA_01383 0.34 -1.7
45,796 + BACOVA_01383 0.34 -0.3
45,796 + BACOVA_01383 0.34 -1.0
45,800 + BACOVA_01383 0.35 -0.5
45,827 + BACOVA_01383 0.40 +0.3
45,861 - BACOVA_01383 0.46 +1.0
45,873 + BACOVA_01383 0.48 +0.3
45,873 + BACOVA_01383 0.48 +0.2
45,874 - BACOVA_01383 0.48 -0.5
45,874 - BACOVA_01383 0.48 -2.4
45,880 + BACOVA_01383 0.49 +0.3
45,891 - BACOVA_01383 0.51 -0.7
45,908 + BACOVA_01383 0.54 -0.5
45,941 - BACOVA_01383 0.60 +0.4
45,999 - BACOVA_01383 0.70 +0.7
46,032 - BACOVA_01383 0.76 +1.4
46,073 + BACOVA_01383 0.83 -0.7
46,073 + BACOVA_01383 0.83 -0.3
46,073 + BACOVA_01383 0.83 -0.7
46,074 - BACOVA_01383 0.84 +1.1
46,122 + +0.3
46,125 - +0.3
46,129 - -0.2
46,142 + -0.1
46,143 - -0.7
46,149 + -0.4
46,149 + +0.6
46,197 + +0.4
46,197 + +0.4
46,197 + +0.8
46,198 - -0.2
46,231 + -0.5
46,232 - -0.4
46,307 + -0.7
46,330 + -0.2
46,331 - -0.1
46,335 - -0.2
46,359 - +0.4
46,387 - BACOVA_01384 0.11 -2.1
46,409 + BACOVA_01384 0.12 -0.1
46,513 + BACOVA_01384 0.19 -0.2
46,590 - BACOVA_01384 0.24 -0.3
46,590 - BACOVA_01384 0.24 +0.1
46,673 + BACOVA_01384 0.30 +0.2
46,673 + BACOVA_01384 0.30 +0.1
46,674 - BACOVA_01384 0.30 -0.2
46,754 - BACOVA_01384 0.35 -0.1
46,792 + BACOVA_01384 0.38 +0.6
46,792 + BACOVA_01384 0.38 -1.4
46,792 + BACOVA_01384 0.38 -1.8
46,792 + BACOVA_01384 0.38 -0.6
46,792 + BACOVA_01384 0.38 +0.3
46,858 + BACOVA_01384 0.42 -0.7
46,958 - BACOVA_01384 0.49 +0.4
46,982 + BACOVA_01384 0.51 -2.2
47,107 + BACOVA_01384 0.59 -0.7
47,132 - BACOVA_01384 0.61 -1.0

Or see this region's nucleotide sequence