Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05131

Experiment: Tara gum 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05129 and BACOVA_05130 are separated by 21 nucleotidesBACOVA_05130 and BACOVA_05131 are separated by 8 nucleotidesBACOVA_05131 and BACOVA_05132 are separated by 13 nucleotides BACOVA_05129: BACOVA_05129 - hypothetical protein, at 604,151 to 605,728 _05129 BACOVA_05130: BACOVA_05130 - RNA methyltransferase, RsmE family, at 605,750 to 606,448 _05130 BACOVA_05131: BACOVA_05131 - hypothetical protein, at 606,457 to 607,050 _05131 BACOVA_05132: BACOVA_05132 - nucleoside transporter, at 607,064 to 608,314 _05132 Position (kb) 606 607 608Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 605.504 kb on + strand, within BACOVA_05129at 605.567 kb on - strand, within BACOVA_05129at 605.567 kb on - strand, within BACOVA_05129at 605.586 kb on - strandat 605.698 kb on + strandat 605.698 kb on + strandat 605.698 kb on + strandat 605.699 kb on - strandat 605.702 kb on + strandat 605.702 kb on + strandat 605.702 kb on + strandat 605.703 kb on - strandat 605.703 kb on - strandat 605.703 kb on - strandat 605.708 kb on - strandat 605.722 kb on + strandat 605.723 kb on - strandat 605.742 kb on + strandat 605.742 kb on + strandat 605.742 kb on + strandat 605.743 kb on - strandat 605.743 kb on - strandat 605.894 kb on + strand, within BACOVA_05130at 605.894 kb on + strand, within BACOVA_05130at 605.939 kb on + strand, within BACOVA_05130at 605.940 kb on - strand, within BACOVA_05130at 605.958 kb on + strand, within BACOVA_05130at 605.971 kb on + strand, within BACOVA_05130at 605.986 kb on + strand, within BACOVA_05130at 606.109 kb on + strand, within BACOVA_05130at 606.315 kb on + strand, within BACOVA_05130at 606.338 kb on - strand, within BACOVA_05130at 606.358 kb on + strand, within BACOVA_05130at 606.359 kb on - strand, within BACOVA_05130at 606.363 kb on - strand, within BACOVA_05130at 606.422 kb on + strandat 606.425 kb on - strandat 606.436 kb on - strandat 606.436 kb on - strandat 606.440 kb on + strandat 606.449 kb on - strandat 606.459 kb on - strandat 606.469 kb on - strandat 606.525 kb on + strand, within BACOVA_05131at 606.526 kb on - strand, within BACOVA_05131at 606.529 kb on - strand, within BACOVA_05131at 606.681 kb on + strand, within BACOVA_05131at 606.681 kb on + strand, within BACOVA_05131at 606.748 kb on - strand, within BACOVA_05131at 606.771 kb on - strand, within BACOVA_05131at 606.776 kb on + strand, within BACOVA_05131at 606.820 kb on + strand, within BACOVA_05131at 606.841 kb on - strand, within BACOVA_05131at 606.853 kb on + strand, within BACOVA_05131at 606.902 kb on + strand, within BACOVA_05131at 606.943 kb on - strand, within BACOVA_05131at 606.977 kb on - strand, within BACOVA_05131at 606.981 kb on + strand, within BACOVA_05131at 607.021 kb on + strandat 607.031 kb on - strandat 607.031 kb on - strandat 607.095 kb on + strandat 607.104 kb on - strandat 607.137 kb on + strandat 607.138 kb on - strandat 607.200 kb on - strand, within BACOVA_05132at 607.200 kb on - strand, within BACOVA_05132at 607.233 kb on + strand, within BACOVA_05132at 607.234 kb on - strand, within BACOVA_05132at 607.261 kb on + strand, within BACOVA_05132at 607.270 kb on + strand, within BACOVA_05132at 607.271 kb on - strand, within BACOVA_05132at 607.271 kb on - strand, within BACOVA_05132at 607.334 kb on - strand, within BACOVA_05132at 607.397 kb on + strand, within BACOVA_05132at 607.398 kb on - strand, within BACOVA_05132at 607.456 kb on + strand, within BACOVA_05132at 607.456 kb on + strand, within BACOVA_05132at 607.463 kb on + strand, within BACOVA_05132at 607.464 kb on - strand, within BACOVA_05132at 607.464 kb on - strand, within BACOVA_05132at 607.464 kb on - strand, within BACOVA_05132at 607.506 kb on - strand, within BACOVA_05132at 607.506 kb on - strand, within BACOVA_05132at 607.516 kb on + strand, within BACOVA_05132at 607.517 kb on - strand, within BACOVA_05132at 607.548 kb on - strand, within BACOVA_05132at 607.587 kb on + strand, within BACOVA_05132at 607.629 kb on + strand, within BACOVA_05132at 607.633 kb on + strand, within BACOVA_05132at 607.659 kb on - strand, within BACOVA_05132at 607.759 kb on + strand, within BACOVA_05132at 607.784 kb on - strand, within BACOVA_05132at 607.784 kb on - strand, within BACOVA_05132at 607.802 kb on + strand, within BACOVA_05132at 607.823 kb on + strand, within BACOVA_05132at 607.827 kb on + strand, within BACOVA_05132at 607.827 kb on + strand, within BACOVA_05132at 607.828 kb on - strand, within BACOVA_05132at 607.885 kb on + strand, within BACOVA_05132at 607.945 kb on - strand, within BACOVA_05132at 607.945 kb on - strand, within BACOVA_05132at 607.962 kb on + strand, within BACOVA_05132at 607.963 kb on - strand, within BACOVA_05132at 607.963 kb on - strand, within BACOVA_05132at 607.986 kb on - strand, within BACOVA_05132at 607.996 kb on + strand, within BACOVA_05132at 607.996 kb on + strand, within BACOVA_05132at 607.996 kb on + strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.998 kb on + strand, within BACOVA_05132at 607.998 kb on + strand, within BACOVA_05132at 607.998 kb on + strand, within BACOVA_05132at 607.999 kb on - strand, within BACOVA_05132at 607.999 kb on - strand, within BACOVA_05132at 607.999 kb on - strand, within BACOVA_05132at 608.015 kb on + strand, within BACOVA_05132at 608.015 kb on + strand, within BACOVA_05132at 608.028 kb on + strand, within BACOVA_05132at 608.029 kb on - strand, within BACOVA_05132

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Per-strain Table

Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C)
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605,504 + BACOVA_05129 0.86 -0.6
605,567 - BACOVA_05129 0.90 -0.4
605,567 - BACOVA_05129 0.90 -1.0
605,586 - -1.7
605,698 + -0.3
605,698 + +0.2
605,698 + -1.2
605,699 - +0.9
605,702 + -1.8
605,702 + -0.1
605,702 + -1.2
605,703 - -2.9
605,703 - -2.3
605,703 - -0.3
605,708 - +0.4
605,722 + +0.1
605,723 - +0.7
605,742 + +0.9
605,742 + -1.7
605,742 + +0.6
605,743 - -0.4
605,743 - -0.3
605,894 + BACOVA_05130 0.21 +0.1
605,894 + BACOVA_05130 0.21 -0.6
605,939 + BACOVA_05130 0.27 +0.2
605,940 - BACOVA_05130 0.27 +0.2
605,958 + BACOVA_05130 0.30 +1.8
605,971 + BACOVA_05130 0.32 -0.1
605,986 + BACOVA_05130 0.34 -0.2
606,109 + BACOVA_05130 0.51 -1.1
606,315 + BACOVA_05130 0.81 -0.1
606,338 - BACOVA_05130 0.84 -0.4
606,358 + BACOVA_05130 0.87 -0.0
606,359 - BACOVA_05130 0.87 +0.2
606,363 - BACOVA_05130 0.88 +0.9
606,422 + +1.0
606,425 - +0.3
606,436 - +0.1
606,436 - -0.8
606,440 + +0.1
606,449 - -1.2
606,459 - +0.7
606,469 - -0.1
606,525 + BACOVA_05131 0.11 -0.9
606,526 - BACOVA_05131 0.12 -0.4
606,529 - BACOVA_05131 0.12 -0.6
606,681 + BACOVA_05131 0.38 -0.1
606,681 + BACOVA_05131 0.38 -1.1
606,748 - BACOVA_05131 0.49 -1.2
606,771 - BACOVA_05131 0.53 -0.6
606,776 + BACOVA_05131 0.54 +1.1
606,820 + BACOVA_05131 0.61 +1.6
606,841 - BACOVA_05131 0.65 -0.6
606,853 + BACOVA_05131 0.67 -0.0
606,902 + BACOVA_05131 0.75 -1.0
606,943 - BACOVA_05131 0.82 +0.6
606,977 - BACOVA_05131 0.88 +1.1
606,981 + BACOVA_05131 0.88 -1.2
607,021 + +0.9
607,031 - -0.9
607,031 - -0.3
607,095 + -3.5
607,104 - -1.4
607,137 + -3.4
607,138 - -4.5
607,200 - BACOVA_05132 0.11 -1.8
607,200 - BACOVA_05132 0.11 -2.2
607,233 + BACOVA_05132 0.14 -2.7
607,234 - BACOVA_05132 0.14 -5.7
607,261 + BACOVA_05132 0.16 -3.2
607,270 + BACOVA_05132 0.16 -2.8
607,271 - BACOVA_05132 0.17 -3.1
607,271 - BACOVA_05132 0.17 -2.7
607,334 - BACOVA_05132 0.22 -2.2
607,397 + BACOVA_05132 0.27 -2.6
607,398 - BACOVA_05132 0.27 -3.3
607,456 + BACOVA_05132 0.31 -3.3
607,456 + BACOVA_05132 0.31 -4.3
607,463 + BACOVA_05132 0.32 -4.2
607,464 - BACOVA_05132 0.32 -3.1
607,464 - BACOVA_05132 0.32 -2.7
607,464 - BACOVA_05132 0.32 -4.0
607,506 - BACOVA_05132 0.35 -3.9
607,506 - BACOVA_05132 0.35 -2.5
607,516 + BACOVA_05132 0.36 -6.4
607,517 - BACOVA_05132 0.36 -1.9
607,548 - BACOVA_05132 0.39 -3.4
607,587 + BACOVA_05132 0.42 -3.7
607,629 + BACOVA_05132 0.45 -2.5
607,633 + BACOVA_05132 0.45 -2.0
607,659 - BACOVA_05132 0.48 -3.4
607,759 + BACOVA_05132 0.56 -2.6
607,784 - BACOVA_05132 0.58 -3.1
607,784 - BACOVA_05132 0.58 -1.8
607,802 + BACOVA_05132 0.59 -3.4
607,823 + BACOVA_05132 0.61 -3.0
607,827 + BACOVA_05132 0.61 -2.5
607,827 + BACOVA_05132 0.61 -2.6
607,828 - BACOVA_05132 0.61 -2.7
607,885 + BACOVA_05132 0.66 -2.4
607,945 - BACOVA_05132 0.70 -3.6
607,945 - BACOVA_05132 0.70 -4.1
607,962 + BACOVA_05132 0.72 +0.6
607,963 - BACOVA_05132 0.72 -3.5
607,963 - BACOVA_05132 0.72 -3.7
607,986 - BACOVA_05132 0.74 -3.7
607,996 + BACOVA_05132 0.75 -2.3
607,996 + BACOVA_05132 0.75 -1.1
607,996 + BACOVA_05132 0.75 -3.5
607,997 - BACOVA_05132 0.75 -3.5
607,997 - BACOVA_05132 0.75 -2.7
607,997 - BACOVA_05132 0.75 -3.5
607,997 - BACOVA_05132 0.75 -1.8
607,997 - BACOVA_05132 0.75 -4.8
607,997 - BACOVA_05132 0.75 -3.4
607,997 - BACOVA_05132 0.75 -2.7
607,998 + BACOVA_05132 0.75 -5.3
607,998 + BACOVA_05132 0.75 -3.7
607,998 + BACOVA_05132 0.75 -3.2
607,999 - BACOVA_05132 0.75 -3.2
607,999 - BACOVA_05132 0.75 -3.6
607,999 - BACOVA_05132 0.75 -3.6
608,015 + BACOVA_05132 0.76 -3.8
608,015 + BACOVA_05132 0.76 -3.4
608,028 + BACOVA_05132 0.77 -4.1
608,029 - BACOVA_05132 0.77 -3.9

Or see this region's nucleotide sequence