Experiment: Tara gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05080 and BACOVA_05081 are separated by 10 nucleotides BACOVA_05081 and BACOVA_05082 overlap by 19 nucleotides
BACOVA_05080: BACOVA_05080 - hypothetical protein, at 555,647 to 556,537
_05080
BACOVA_05081: BACOVA_05081 - hypothetical protein, at 556,548 to 556,670
_05081
BACOVA_05082: BACOVA_05082 - oxidoreductase, NAD-binding domain protein, at 556,652 to 558,064
_05082
Position (kb) 556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 555.566 kb on + strand at 555.591 kb on - strand at 555.682 kb on - strand at 555.682 kb on - strand at 555.734 kb on + strand at 555.735 kb on - strand at 555.777 kb on - strand, within BACOVA_05080 at 555.777 kb on - strand, within BACOVA_05080 at 555.791 kb on + strand, within BACOVA_05080 at 555.860 kb on - strand, within BACOVA_05080 at 555.879 kb on + strand, within BACOVA_05080 at 555.886 kb on + strand, within BACOVA_05080 at 555.887 kb on - strand, within BACOVA_05080 at 555.887 kb on - strand, within BACOVA_05080 at 555.891 kb on - strand, within BACOVA_05080 at 555.891 kb on - strand, within BACOVA_05080 at 555.923 kb on - strand, within BACOVA_05080 at 555.949 kb on + strand, within BACOVA_05080 at 555.949 kb on + strand, within BACOVA_05080 at 555.956 kb on - strand, within BACOVA_05080 at 555.976 kb on - strand, within BACOVA_05080 at 555.976 kb on - strand, within BACOVA_05080 at 556.009 kb on - strand, within BACOVA_05080 at 556.096 kb on + strand, within BACOVA_05080 at 556.097 kb on - strand, within BACOVA_05080 at 556.097 kb on - strand, within BACOVA_05080 at 556.102 kb on + strand, within BACOVA_05080 at 556.139 kb on + strand, within BACOVA_05080 at 556.139 kb on + strand, within BACOVA_05080 at 556.257 kb on - strand, within BACOVA_05080 at 556.338 kb on + strand, within BACOVA_05080 at 556.338 kb on + strand, within BACOVA_05080 at 556.343 kb on - strand, within BACOVA_05080 at 556.344 kb on + strand, within BACOVA_05080 at 556.344 kb on + strand, within BACOVA_05080 at 556.345 kb on - strand, within BACOVA_05080 at 556.345 kb on - strand, within BACOVA_05080 at 556.373 kb on + strand, within BACOVA_05080 at 556.374 kb on - strand, within BACOVA_05080 at 556.374 kb on - strand, within BACOVA_05080 at 556.378 kb on + strand, within BACOVA_05080 at 556.379 kb on - strand, within BACOVA_05080 at 556.450 kb on - strand at 556.476 kb on - strand at 556.476 kb on - strand at 556.476 kb on - strand at 556.476 kb on - strand at 556.479 kb on + strand at 556.480 kb on - strand at 556.480 kb on - strand at 556.510 kb on + strand at 556.510 kb on + strand at 556.511 kb on - strand at 556.548 kb on - strand at 556.553 kb on - strand at 556.557 kb on + strand at 556.586 kb on + strand, within BACOVA_05081 at 556.622 kb on + strand, within BACOVA_05081 at 556.623 kb on - strand, within BACOVA_05081 at 556.634 kb on - strand, within BACOVA_05081 at 556.643 kb on + strand, within BACOVA_05081 at 556.644 kb on - strand, within BACOVA_05081 at 556.653 kb on + strand at 556.830 kb on + strand, within BACOVA_05082 at 556.831 kb on - strand, within BACOVA_05082 at 556.861 kb on + strand, within BACOVA_05082 at 556.862 kb on - strand, within BACOVA_05082 at 556.904 kb on + strand, within BACOVA_05082 at 556.904 kb on + strand, within BACOVA_05082 at 556.905 kb on - strand, within BACOVA_05082 at 556.912 kb on + strand, within BACOVA_05082 at 556.912 kb on + strand, within BACOVA_05082 at 556.913 kb on - strand, within BACOVA_05082 at 556.913 kb on - strand, within BACOVA_05082 at 556.913 kb on - strand, within BACOVA_05082 at 556.921 kb on + strand, within BACOVA_05082 at 556.928 kb on - strand, within BACOVA_05082 at 557.075 kb on + strand, within BACOVA_05082 at 557.082 kb on + strand, within BACOVA_05082 at 557.082 kb on + strand, within BACOVA_05082 at 557.083 kb on - strand, within BACOVA_05082 at 557.086 kb on + strand, within BACOVA_05082 at 557.086 kb on + strand, within BACOVA_05082 at 557.086 kb on + strand, within BACOVA_05082 at 557.087 kb on - strand, within BACOVA_05082 at 557.111 kb on + strand, within BACOVA_05082 at 557.112 kb on - strand, within BACOVA_05082 at 557.216 kb on - strand, within BACOVA_05082 at 557.255 kb on + strand, within BACOVA_05082 at 557.256 kb on - strand, within BACOVA_05082 at 557.291 kb on - strand, within BACOVA_05082 at 557.291 kb on - strand, within BACOVA_05082 at 557.328 kb on + strand, within BACOVA_05082 at 557.328 kb on + strand, within BACOVA_05082 at 557.328 kb on + strand, within BACOVA_05082 at 557.329 kb on - strand, within BACOVA_05082 at 557.329 kb on - strand, within BACOVA_05082 at 557.330 kb on + strand, within BACOVA_05082 at 557.330 kb on + strand, within BACOVA_05082 at 557.331 kb on - strand, within BACOVA_05082 at 557.346 kb on - strand, within BACOVA_05082 at 557.353 kb on + strand, within BACOVA_05082 at 557.353 kb on + strand, within BACOVA_05082 at 557.354 kb on - strand, within BACOVA_05082 at 557.356 kb on - strand, within BACOVA_05082 at 557.412 kb on + strand, within BACOVA_05082 at 557.413 kb on - strand, within BACOVA_05082 at 557.413 kb on - strand, within BACOVA_05082 at 557.413 kb on - strand, within BACOVA_05082 at 557.413 kb on - strand, within BACOVA_05082 at 557.423 kb on + strand, within BACOVA_05082 at 557.432 kb on + strand, within BACOVA_05082 at 557.444 kb on + strand, within BACOVA_05082 at 557.465 kb on + strand, within BACOVA_05082 at 557.481 kb on + strand, within BACOVA_05082 at 557.490 kb on + strand, within BACOVA_05082 at 557.491 kb on - strand, within BACOVA_05082 at 557.491 kb on - strand, within BACOVA_05082 at 557.512 kb on + strand, within BACOVA_05082 at 557.512 kb on + strand, within BACOVA_05082 at 557.513 kb on - strand, within BACOVA_05082 at 557.522 kb on - strand, within BACOVA_05082 at 557.522 kb on - strand, within BACOVA_05082 at 557.547 kb on - strand, within BACOVA_05082 at 557.547 kb on - strand, within BACOVA_05082 at 557.619 kb on + strand, within BACOVA_05082 at 557.657 kb on + strand, within BACOVA_05082 at 557.661 kb on + strand, within BACOVA_05082 at 557.661 kb on + strand, within BACOVA_05082 at 557.662 kb on - strand, within BACOVA_05082 at 557.664 kb on - strand, within BACOVA_05082
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C) remove 555,566 + +0.2 555,591 - +0.1 555,682 - +0.9 555,682 - +0.7 555,734 + -2.5 555,735 - -1.0 555,777 - BACOVA_05080 0.15 -1.3 555,777 - BACOVA_05080 0.15 -0.1 555,791 + BACOVA_05080 0.16 -0.2 555,860 - BACOVA_05080 0.24 +1.4 555,879 + BACOVA_05080 0.26 +1.0 555,886 + BACOVA_05080 0.27 +0.4 555,887 - BACOVA_05080 0.27 +1.1 555,887 - BACOVA_05080 0.27 +1.4 555,891 - BACOVA_05080 0.27 +1.4 555,891 - BACOVA_05080 0.27 -0.7 555,923 - BACOVA_05080 0.31 +0.7 555,949 + BACOVA_05080 0.34 +0.4 555,949 + BACOVA_05080 0.34 +1.6 555,956 - BACOVA_05080 0.35 -0.6 555,976 - BACOVA_05080 0.37 +1.1 555,976 - BACOVA_05080 0.37 +1.3 556,009 - BACOVA_05080 0.41 -1.3 556,096 + BACOVA_05080 0.50 -0.2 556,097 - BACOVA_05080 0.51 -2.2 556,097 - BACOVA_05080 0.51 +0.0 556,102 + BACOVA_05080 0.51 -0.9 556,139 + BACOVA_05080 0.55 -0.2 556,139 + BACOVA_05080 0.55 -1.2 556,257 - BACOVA_05080 0.68 -2.3 556,338 + BACOVA_05080 0.78 -1.0 556,338 + BACOVA_05080 0.78 +1.0 556,343 - BACOVA_05080 0.78 -3.0 556,344 + BACOVA_05080 0.78 +0.9 556,344 + BACOVA_05080 0.78 -1.2 556,345 - BACOVA_05080 0.78 +1.8 556,345 - BACOVA_05080 0.78 +0.7 556,373 + BACOVA_05080 0.81 +0.1 556,374 - BACOVA_05080 0.82 -0.2 556,374 - BACOVA_05080 0.82 +1.0 556,378 + BACOVA_05080 0.82 -1.0 556,379 - BACOVA_05080 0.82 +0.2 556,450 - -1.0 556,476 - +0.3 556,476 - +0.6 556,476 - -0.2 556,476 - -0.2 556,479 + -1.0 556,480 - +1.0 556,480 - -0.3 556,510 + -0.2 556,510 + -0.7 556,511 - -1.4 556,548 - +0.1 556,553 - -0.6 556,557 + +0.0 556,586 + BACOVA_05081 0.31 +0.1 556,622 + BACOVA_05081 0.60 -0.5 556,623 - BACOVA_05081 0.61 -1.3 556,634 - BACOVA_05081 0.70 +0.0 556,643 + BACOVA_05081 0.77 -0.6 556,644 - BACOVA_05081 0.78 -1.0 556,653 + +1.6 556,830 + BACOVA_05082 0.13 +0.6 556,831 - BACOVA_05082 0.13 -0.8 556,861 + BACOVA_05082 0.15 -0.4 556,862 - BACOVA_05082 0.15 -2.1 556,904 + BACOVA_05082 0.18 +1.1 556,904 + BACOVA_05082 0.18 -2.2 556,905 - BACOVA_05082 0.18 -0.5 556,912 + BACOVA_05082 0.18 -0.0 556,912 + BACOVA_05082 0.18 -0.5 556,913 - BACOVA_05082 0.18 -0.6 556,913 - BACOVA_05082 0.18 -1.1 556,913 - BACOVA_05082 0.18 +0.5 556,921 + BACOVA_05082 0.19 -0.6 556,928 - BACOVA_05082 0.20 -1.6 557,075 + BACOVA_05082 0.30 -1.0 557,082 + BACOVA_05082 0.30 +1.4 557,082 + BACOVA_05082 0.30 -1.4 557,083 - BACOVA_05082 0.31 -0.0 557,086 + BACOVA_05082 0.31 -0.0 557,086 + BACOVA_05082 0.31 +0.1 557,086 + BACOVA_05082 0.31 -0.6 557,087 - BACOVA_05082 0.31 -0.2 557,111 + BACOVA_05082 0.32 -0.9 557,112 - BACOVA_05082 0.33 +0.1 557,216 - BACOVA_05082 0.40 -2.0 557,255 + BACOVA_05082 0.43 -1.1 557,256 - BACOVA_05082 0.43 -0.3 557,291 - BACOVA_05082 0.45 -1.4 557,291 - BACOVA_05082 0.45 -1.0 557,328 + BACOVA_05082 0.48 -0.5 557,328 + BACOVA_05082 0.48 +1.7 557,328 + BACOVA_05082 0.48 -0.4 557,329 - BACOVA_05082 0.48 -0.5 557,329 - BACOVA_05082 0.48 +0.4 557,330 + BACOVA_05082 0.48 +1.0 557,330 + BACOVA_05082 0.48 +1.0 557,331 - BACOVA_05082 0.48 +1.1 557,346 - BACOVA_05082 0.49 -1.2 557,353 + BACOVA_05082 0.50 +0.6 557,353 + BACOVA_05082 0.50 -1.1 557,354 - BACOVA_05082 0.50 -0.6 557,356 - BACOVA_05082 0.50 +0.0 557,412 + BACOVA_05082 0.54 +0.0 557,413 - BACOVA_05082 0.54 +1.4 557,413 - BACOVA_05082 0.54 -1.0 557,413 - BACOVA_05082 0.54 +0.5 557,413 - BACOVA_05082 0.54 +2.4 557,423 + BACOVA_05082 0.55 +0.4 557,432 + BACOVA_05082 0.55 +1.2 557,444 + BACOVA_05082 0.56 +0.1 557,465 + BACOVA_05082 0.58 -0.4 557,481 + BACOVA_05082 0.59 +0.4 557,490 + BACOVA_05082 0.59 -0.1 557,491 - BACOVA_05082 0.59 +0.5 557,491 - BACOVA_05082 0.59 +0.4 557,512 + BACOVA_05082 0.61 +1.4 557,512 + BACOVA_05082 0.61 +0.1 557,513 - BACOVA_05082 0.61 -0.0 557,522 - BACOVA_05082 0.62 +0.7 557,522 - BACOVA_05082 0.62 -0.0 557,547 - BACOVA_05082 0.63 -0.2 557,547 - BACOVA_05082 0.63 +0.8 557,619 + BACOVA_05082 0.68 +1.4 557,657 + BACOVA_05082 0.71 -0.4 557,661 + BACOVA_05082 0.71 -0.3 557,661 + BACOVA_05082 0.71 -0.8 557,662 - BACOVA_05082 0.71 -0.5 557,664 - BACOVA_05082 0.72 +3.4
Or see this region's nucleotide sequence