Experiment: Tara gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04192 and BACOVA_04193 are separated by 218 nucleotides BACOVA_04193 and BACOVA_04194 are separated by 303 nucleotides BACOVA_04194 and BACOVA_04195 overlap by 4 nucleotides BACOVA_04195 and BACOVA_04196 are separated by 12 nucleotides
BACOVA_04192: BACOVA_04192 - YbaK/proline--tRNA ligase associated domain protein, at 69,228 to 69,791
_04192
BACOVA_04193: BACOVA_04193 - hypothetical protein, at 70,010 to 70,114
_04193
BACOVA_04194: BACOVA_04194 - efflux ABC transporter, permease protein, at 70,418 to 72,838
_04194
BACOVA_04195: BACOVA_04195 - ABC transporter, ATP-binding protein, at 72,835 to 73,551
_04195
BACOVA_04196: BACOVA_04196 - efflux transporter, RND family, MFP subunit, at 73,564 to 74,811
_04196
Position (kb) 70
71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 69.422 kb on + strand, within BACOVA_04192 at 69.423 kb on - strand, within BACOVA_04192 at 69.423 kb on - strand, within BACOVA_04192 at 69.452 kb on + strand, within BACOVA_04192 at 69.453 kb on - strand, within BACOVA_04192 at 69.478 kb on + strand, within BACOVA_04192 at 69.526 kb on + strand, within BACOVA_04192 at 69.527 kb on - strand, within BACOVA_04192 at 69.527 kb on - strand, within BACOVA_04192 at 69.527 kb on - strand, within BACOVA_04192 at 69.530 kb on + strand, within BACOVA_04192 at 69.531 kb on - strand, within BACOVA_04192 at 69.582 kb on - strand, within BACOVA_04192 at 69.607 kb on + strand, within BACOVA_04192 at 69.608 kb on - strand, within BACOVA_04192 at 69.614 kb on + strand, within BACOVA_04192 at 69.614 kb on + strand, within BACOVA_04192 at 69.615 kb on - strand, within BACOVA_04192 at 69.623 kb on + strand, within BACOVA_04192 at 69.637 kb on + strand, within BACOVA_04192 at 69.638 kb on - strand, within BACOVA_04192 at 69.654 kb on - strand, within BACOVA_04192 at 69.675 kb on + strand, within BACOVA_04192 at 69.675 kb on + strand, within BACOVA_04192 at 69.675 kb on + strand, within BACOVA_04192 at 69.676 kb on - strand, within BACOVA_04192 at 69.676 kb on - strand, within BACOVA_04192 at 69.676 kb on - strand, within BACOVA_04192 at 69.677 kb on + strand, within BACOVA_04192 at 69.678 kb on - strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.680 kb on - strand, within BACOVA_04192 at 69.697 kb on + strand, within BACOVA_04192 at 69.698 kb on - strand, within BACOVA_04192 at 69.698 kb on - strand, within BACOVA_04192 at 69.743 kb on - strand at 69.743 kb on - strand at 69.746 kb on - strand at 69.746 kb on - strand at 69.746 kb on - strand at 69.789 kb on + strand at 69.836 kb on + strand at 69.837 kb on - strand at 69.858 kb on + strand at 69.859 kb on - strand at 69.863 kb on + strand at 69.863 kb on + strand at 69.863 kb on + strand at 69.864 kb on - strand at 70.002 kb on + strand at 70.012 kb on - strand at 70.047 kb on + strand, within BACOVA_04193 at 70.116 kb on + strand at 70.116 kb on + strand at 70.116 kb on + strand at 70.131 kb on - strand at 70.199 kb on - strand at 70.210 kb on - strand at 70.214 kb on - strand at 70.293 kb on - strand at 70.293 kb on - strand at 70.317 kb on - strand at 70.321 kb on + strand at 70.326 kb on + strand at 70.327 kb on - strand at 70.329 kb on - strand at 70.341 kb on + strand at 70.341 kb on + strand at 70.406 kb on + strand at 70.455 kb on - strand at 70.511 kb on + strand at 70.517 kb on + strand at 70.517 kb on + strand at 70.517 kb on + strand at 70.517 kb on + strand at 70.521 kb on - strand at 70.521 kb on - strand at 70.523 kb on - strand at 70.523 kb on - strand at 70.565 kb on + strand at 70.579 kb on + strand at 70.579 kb on + strand at 70.604 kb on + strand at 70.605 kb on - strand at 70.605 kb on - strand at 70.606 kb on + strand at 70.606 kb on + strand at 70.688 kb on - strand, within BACOVA_04194 at 70.691 kb on + strand, within BACOVA_04194 at 70.692 kb on - strand, within BACOVA_04194 at 70.692 kb on - strand, within BACOVA_04194 at 70.733 kb on + strand, within BACOVA_04194 at 70.759 kb on + strand, within BACOVA_04194 at 70.946 kb on - strand, within BACOVA_04194 at 70.947 kb on + strand, within BACOVA_04194 at 70.947 kb on + strand, within BACOVA_04194 at 70.947 kb on + strand, within BACOVA_04194 at 70.948 kb on - strand, within BACOVA_04194 at 70.993 kb on + strand, within BACOVA_04194 at 70.993 kb on + strand, within BACOVA_04194 at 71.000 kb on - strand, within BACOVA_04194 at 71.000 kb on - strand, within BACOVA_04194 at 71.001 kb on + strand, within BACOVA_04194 at 71.068 kb on + strand, within BACOVA_04194 at 71.069 kb on - strand, within BACOVA_04194 at 71.069 kb on - strand, within BACOVA_04194 at 71.081 kb on + strand, within BACOVA_04194 at 71.082 kb on - strand, within BACOVA_04194 at 71.125 kb on + strand, within BACOVA_04194 at 71.125 kb on + strand, within BACOVA_04194 at 71.126 kb on - strand, within BACOVA_04194 at 71.143 kb on + strand, within BACOVA_04194 at 71.144 kb on - strand, within BACOVA_04194 at 71.144 kb on - strand, within BACOVA_04194 at 71.172 kb on + strand, within BACOVA_04194 at 71.214 kb on + strand, within BACOVA_04194 at 71.215 kb on - strand, within BACOVA_04194 at 71.341 kb on + strand, within BACOVA_04194 at 71.414 kb on - strand, within BACOVA_04194 at 71.506 kb on + strand, within BACOVA_04194 at 71.533 kb on + strand, within BACOVA_04194 at 71.533 kb on + strand, within BACOVA_04194 at 71.533 kb on + strand, within BACOVA_04194 at 71.533 kb on + strand, within BACOVA_04194 at 71.582 kb on - strand, within BACOVA_04194 at 71.644 kb on - strand, within BACOVA_04194 at 71.660 kb on + strand, within BACOVA_04194 at 71.701 kb on - strand, within BACOVA_04194 at 71.726 kb on - strand, within BACOVA_04194 at 71.732 kb on - strand, within BACOVA_04194 at 71.732 kb on - strand, within BACOVA_04194 at 71.738 kb on + strand, within BACOVA_04194 at 71.771 kb on + strand, within BACOVA_04194 at 71.789 kb on + strand, within BACOVA_04194 at 71.790 kb on - strand, within BACOVA_04194 at 71.790 kb on - strand, within BACOVA_04194 at 71.865 kb on - strand, within BACOVA_04194 at 71.910 kb on - strand, within BACOVA_04194 at 71.925 kb on + strand, within BACOVA_04194 at 71.929 kb on + strand, within BACOVA_04194 at 71.951 kb on - strand, within BACOVA_04194 at 71.951 kb on - strand, within BACOVA_04194 at 72.013 kb on - strand, within BACOVA_04194 at 72.018 kb on - strand, within BACOVA_04194 at 72.018 kb on - strand, within BACOVA_04194 at 72.035 kb on + strand, within BACOVA_04194 at 72.035 kb on + strand, within BACOVA_04194 at 72.035 kb on + strand, within BACOVA_04194 at 72.036 kb on - strand, within BACOVA_04194 at 72.036 kb on - strand, within BACOVA_04194 at 72.036 kb on - strand, within BACOVA_04194 at 72.053 kb on + strand, within BACOVA_04194 at 72.168 kb on + strand, within BACOVA_04194 at 72.169 kb on - strand, within BACOVA_04194 at 72.173 kb on - strand, within BACOVA_04194 at 72.173 kb on - strand, within BACOVA_04194 at 72.174 kb on + strand, within BACOVA_04194 at 72.175 kb on - strand, within BACOVA_04194 at 72.187 kb on + strand, within BACOVA_04194 at 72.188 kb on - strand, within BACOVA_04194 at 72.188 kb on - strand, within BACOVA_04194 at 72.188 kb on - strand, within BACOVA_04194 at 72.189 kb on + strand, within BACOVA_04194 at 72.205 kb on + strand, within BACOVA_04194 at 72.206 kb on - strand, within BACOVA_04194 at 72.208 kb on - strand, within BACOVA_04194 at 72.226 kb on - strand, within BACOVA_04194 at 72.304 kb on + strand, within BACOVA_04194 at 72.305 kb on - strand, within BACOVA_04194 at 72.310 kb on - strand, within BACOVA_04194 at 72.310 kb on - strand, within BACOVA_04194 at 72.374 kb on - strand, within BACOVA_04194 at 72.386 kb on + strand, within BACOVA_04194 at 72.475 kb on - strand, within BACOVA_04194 at 72.479 kb on + strand, within BACOVA_04194 at 72.479 kb on + strand, within BACOVA_04194 at 72.480 kb on - strand, within BACOVA_04194 at 72.510 kb on + strand, within BACOVA_04194 at 72.555 kb on + strand, within BACOVA_04194 at 72.555 kb on + strand, within BACOVA_04194 at 72.555 kb on + strand, within BACOVA_04194 at 72.556 kb on - strand, within BACOVA_04194 at 72.667 kb on - strand at 72.670 kb on + strand at 72.671 kb on - strand at 72.671 kb on - strand at 72.671 kb on - strand at 72.679 kb on - strand at 72.720 kb on + strand at 72.720 kb on + strand at 72.721 kb on - strand at 72.721 kb on - strand at 72.725 kb on + strand at 72.726 kb on - strand at 72.769 kb on + strand at 72.913 kb on + strand, within BACOVA_04195 at 72.935 kb on + strand, within BACOVA_04195 at 72.935 kb on + strand, within BACOVA_04195 at 72.936 kb on - strand, within BACOVA_04195 at 72.967 kb on - strand, within BACOVA_04195 at 73.071 kb on + strand, within BACOVA_04195 at 73.071 kb on + strand, within BACOVA_04195 at 73.071 kb on + strand, within BACOVA_04195 at 73.072 kb on - strand, within BACOVA_04195 at 73.157 kb on - strand, within BACOVA_04195 at 73.182 kb on + strand, within BACOVA_04195 at 73.223 kb on + strand, within BACOVA_04195 at 73.224 kb on - strand, within BACOVA_04195 at 73.291 kb on - strand, within BACOVA_04195 at 73.303 kb on - strand, within BACOVA_04195 at 73.395 kb on + strand, within BACOVA_04195 at 73.405 kb on - strand, within BACOVA_04195 at 73.475 kb on - strand, within BACOVA_04195 at 73.475 kb on - strand, within BACOVA_04195 at 73.475 kb on - strand, within BACOVA_04195 at 73.531 kb on + strand at 73.546 kb on - strand at 73.551 kb on + strand at 73.552 kb on - strand at 73.554 kb on + strand at 73.555 kb on - strand at 73.558 kb on + strand at 73.571 kb on - strand at 73.576 kb on + strand at 73.679 kb on - strand at 73.727 kb on + strand, within BACOVA_04196 at 73.728 kb on - strand, within BACOVA_04196 at 73.728 kb on - strand, within BACOVA_04196 at 73.779 kb on + strand, within BACOVA_04196 at 73.780 kb on - strand, within BACOVA_04196 at 73.810 kb on + strand, within BACOVA_04196 at 73.817 kb on + strand, within BACOVA_04196 at 73.818 kb on - strand, within BACOVA_04196
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C) remove 69,422 + BACOVA_04192 0.34 +0.3 69,423 - BACOVA_04192 0.35 -0.9 69,423 - BACOVA_04192 0.35 -0.7 69,452 + BACOVA_04192 0.40 +0.1 69,453 - BACOVA_04192 0.40 -1.1 69,478 + BACOVA_04192 0.44 -0.4 69,526 + BACOVA_04192 0.53 -0.7 69,527 - BACOVA_04192 0.53 -0.0 69,527 - BACOVA_04192 0.53 -1.0 69,527 - BACOVA_04192 0.53 -0.6 69,530 + BACOVA_04192 0.54 -0.4 69,531 - BACOVA_04192 0.54 +1.3 69,582 - BACOVA_04192 0.63 -1.1 69,607 + BACOVA_04192 0.67 +1.7 69,608 - BACOVA_04192 0.67 +0.4 69,614 + BACOVA_04192 0.68 +1.3 69,614 + BACOVA_04192 0.68 -0.6 69,615 - BACOVA_04192 0.69 +0.3 69,623 + BACOVA_04192 0.70 -0.8 69,637 + BACOVA_04192 0.73 -1.1 69,638 - BACOVA_04192 0.73 -0.7 69,654 - BACOVA_04192 0.76 -0.4 69,675 + BACOVA_04192 0.79 -0.7 69,675 + BACOVA_04192 0.79 -2.5 69,675 + BACOVA_04192 0.79 -0.7 69,676 - BACOVA_04192 0.79 -2.0 69,676 - BACOVA_04192 0.79 -1.3 69,676 - BACOVA_04192 0.79 -0.5 69,677 + BACOVA_04192 0.80 -1.3 69,678 - BACOVA_04192 0.80 +0.7 69,679 + BACOVA_04192 0.80 -0.5 69,679 + BACOVA_04192 0.80 -0.9 69,679 + BACOVA_04192 0.80 +1.1 69,679 + BACOVA_04192 0.80 +0.2 69,680 - BACOVA_04192 0.80 +1.1 69,697 + BACOVA_04192 0.83 -0.1 69,698 - BACOVA_04192 0.83 -2.3 69,698 - BACOVA_04192 0.83 +0.1 69,743 - -0.1 69,743 - -1.0 69,746 - -0.2 69,746 - -0.1 69,746 - -0.1 69,789 + -0.1 69,836 + -0.7 69,837 - +0.1 69,858 + +1.7 69,859 - -0.1 69,863 + +0.2 69,863 + +0.6 69,863 + -1.9 69,864 - -1.8 70,002 + +1.7 70,012 - +0.7 70,047 + BACOVA_04193 0.35 -1.9 70,116 + -1.0 70,116 + +0.2 70,116 + -0.3 70,131 - +0.3 70,199 - -1.0 70,210 - +0.3 70,214 - -0.1 70,293 - -0.7 70,293 - -0.9 70,317 - +0.3 70,321 + +0.1 70,326 + -0.1 70,327 - -1.7 70,329 - -0.1 70,341 + -0.9 70,341 + -1.5 70,406 + +0.2 70,455 - +1.6 70,511 + -1.5 70,517 + -0.3 70,517 + -0.6 70,517 + +0.4 70,517 + -0.2 70,521 - +0.2 70,521 - +0.9 70,523 - -0.1 70,523 - -0.4 70,565 + -0.3 70,579 + -1.6 70,579 + +0.4 70,604 + +0.5 70,605 - +0.2 70,605 - -2.5 70,606 + -1.0 70,606 + -1.0 70,688 - BACOVA_04194 0.11 +0.7 70,691 + BACOVA_04194 0.11 +1.7 70,692 - BACOVA_04194 0.11 -1.0 70,692 - BACOVA_04194 0.11 -1.5 70,733 + BACOVA_04194 0.13 -0.2 70,759 + BACOVA_04194 0.14 -1.0 70,946 - BACOVA_04194 0.22 -1.1 70,947 + BACOVA_04194 0.22 -0.9 70,947 + BACOVA_04194 0.22 -0.0 70,947 + BACOVA_04194 0.22 +1.3 70,948 - BACOVA_04194 0.22 -0.4 70,993 + BACOVA_04194 0.24 +0.4 70,993 + BACOVA_04194 0.24 -1.4 71,000 - BACOVA_04194 0.24 -0.4 71,000 - BACOVA_04194 0.24 -1.4 71,001 + BACOVA_04194 0.24 +0.6 71,068 + BACOVA_04194 0.27 -0.3 71,069 - BACOVA_04194 0.27 -0.5 71,069 - BACOVA_04194 0.27 +0.1 71,081 + BACOVA_04194 0.27 -0.5 71,082 - BACOVA_04194 0.27 +0.0 71,125 + BACOVA_04194 0.29 -1.1 71,125 + BACOVA_04194 0.29 -0.4 71,126 - BACOVA_04194 0.29 +0.4 71,143 + BACOVA_04194 0.30 -0.3 71,144 - BACOVA_04194 0.30 -0.3 71,144 - BACOVA_04194 0.30 +0.6 71,172 + BACOVA_04194 0.31 -0.9 71,214 + BACOVA_04194 0.33 +0.7 71,215 - BACOVA_04194 0.33 -1.2 71,341 + BACOVA_04194 0.38 +0.3 71,414 - BACOVA_04194 0.41 -0.8 71,506 + BACOVA_04194 0.45 -1.0 71,533 + BACOVA_04194 0.46 +1.0 71,533 + BACOVA_04194 0.46 +0.2 71,533 + BACOVA_04194 0.46 +0.3 71,533 + BACOVA_04194 0.46 -0.6 71,582 - BACOVA_04194 0.48 -0.0 71,644 - BACOVA_04194 0.51 -0.1 71,660 + BACOVA_04194 0.51 +0.1 71,701 - BACOVA_04194 0.53 -1.9 71,726 - BACOVA_04194 0.54 -0.1 71,732 - BACOVA_04194 0.54 +2.3 71,732 - BACOVA_04194 0.54 -0.7 71,738 + BACOVA_04194 0.55 +0.9 71,771 + BACOVA_04194 0.56 -0.1 71,789 + BACOVA_04194 0.57 +1.7 71,790 - BACOVA_04194 0.57 +0.2 71,790 - BACOVA_04194 0.57 -1.3 71,865 - BACOVA_04194 0.60 -1.3 71,910 - BACOVA_04194 0.62 +0.1 71,925 + BACOVA_04194 0.62 +1.3 71,929 + BACOVA_04194 0.62 +0.6 71,951 - BACOVA_04194 0.63 -0.7 71,951 - BACOVA_04194 0.63 -1.9 72,013 - BACOVA_04194 0.66 -0.0 72,018 - BACOVA_04194 0.66 -0.1 72,018 - BACOVA_04194 0.66 +0.9 72,035 + BACOVA_04194 0.67 -0.0 72,035 + BACOVA_04194 0.67 +0.8 72,035 + BACOVA_04194 0.67 +1.3 72,036 - BACOVA_04194 0.67 +1.1 72,036 - BACOVA_04194 0.67 +1.8 72,036 - BACOVA_04194 0.67 -0.1 72,053 + BACOVA_04194 0.68 +1.1 72,168 + BACOVA_04194 0.72 -3.1 72,169 - BACOVA_04194 0.72 +0.2 72,173 - BACOVA_04194 0.72 -1.1 72,173 - BACOVA_04194 0.72 -2.0 72,174 + BACOVA_04194 0.73 +1.5 72,175 - BACOVA_04194 0.73 -0.3 72,187 + BACOVA_04194 0.73 -1.9 72,188 - BACOVA_04194 0.73 -0.0 72,188 - BACOVA_04194 0.73 -0.5 72,188 - BACOVA_04194 0.73 +1.3 72,189 + BACOVA_04194 0.73 -1.9 72,205 + BACOVA_04194 0.74 -0.3 72,206 - BACOVA_04194 0.74 -0.2 72,208 - BACOVA_04194 0.74 -0.1 72,226 - BACOVA_04194 0.75 +0.5 72,304 + BACOVA_04194 0.78 -0.5 72,305 - BACOVA_04194 0.78 -0.0 72,310 - BACOVA_04194 0.78 -0.7 72,310 - BACOVA_04194 0.78 -0.7 72,374 - BACOVA_04194 0.81 +0.1 72,386 + BACOVA_04194 0.81 +1.1 72,475 - BACOVA_04194 0.85 +0.4 72,479 + BACOVA_04194 0.85 +0.4 72,479 + BACOVA_04194 0.85 -1.1 72,480 - BACOVA_04194 0.85 -1.3 72,510 + BACOVA_04194 0.86 -0.3 72,555 + BACOVA_04194 0.88 +0.9 72,555 + BACOVA_04194 0.88 +1.6 72,555 + BACOVA_04194 0.88 +0.0 72,556 - BACOVA_04194 0.88 -1.3 72,667 - -0.7 72,670 + +0.6 72,671 - -0.8 72,671 - -0.3 72,671 - -1.0 72,679 - +0.8 72,720 + +1.3 72,720 + -1.5 72,721 - +0.1 72,721 - +0.2 72,725 + +0.2 72,726 - +0.3 72,769 + -0.7 72,913 + BACOVA_04195 0.11 +0.9 72,935 + BACOVA_04195 0.14 -1.6 72,935 + BACOVA_04195 0.14 -0.4 72,936 - BACOVA_04195 0.14 +0.2 72,967 - BACOVA_04195 0.18 -0.7 73,071 + BACOVA_04195 0.33 +0.6 73,071 + BACOVA_04195 0.33 +0.5 73,071 + BACOVA_04195 0.33 -0.0 73,072 - BACOVA_04195 0.33 +1.8 73,157 - BACOVA_04195 0.45 -0.8 73,182 + BACOVA_04195 0.48 +0.2 73,223 + BACOVA_04195 0.54 -1.0 73,224 - BACOVA_04195 0.54 -0.0 73,291 - BACOVA_04195 0.64 +0.2 73,303 - BACOVA_04195 0.65 -0.3 73,395 + BACOVA_04195 0.78 -0.5 73,405 - BACOVA_04195 0.79 -0.0 73,475 - BACOVA_04195 0.89 +0.2 73,475 - BACOVA_04195 0.89 +0.1 73,475 - BACOVA_04195 0.89 +0.3 73,531 + -0.4 73,546 - -0.5 73,551 + -0.5 73,552 - +0.6 73,554 + -0.3 73,555 - +1.3 73,558 + +0.1 73,571 - -1.1 73,576 + +1.0 73,679 - -1.1 73,727 + BACOVA_04196 0.13 -0.7 73,728 - BACOVA_04196 0.13 -1.3 73,728 - BACOVA_04196 0.13 +0.9 73,779 + BACOVA_04196 0.17 +0.1 73,780 - BACOVA_04196 0.17 +0.0 73,810 + BACOVA_04196 0.20 +0.8 73,817 + BACOVA_04196 0.20 +0.3 73,818 - BACOVA_04196 0.20 -1.0
Or see this region's nucleotide sequence