Experiment: Tara gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04067 and BACOVA_04068 are separated by 112 nucleotides BACOVA_04068 and BACOVA_04069 are separated by 3 nucleotides BACOVA_04069 and BACOVA_04070 overlap by 4 nucleotides
BACOVA_04067: BACOVA_04067 - hypothetical protein, at 397,511 to 397,918
_04067
BACOVA_04068: BACOVA_04068 - hypothetical protein, at 398,031 to 398,438
_04068
BACOVA_04069: BACOVA_04069 - phosphoadenosine phosphosulfate reductase family protein, at 398,442 to 399,746
_04069
BACOVA_04070: BACOVA_04070 - ParB-like protein, at 399,743 to 400,285
_04070
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 397.447 kb on + strand at 397.478 kb on + strand at 397.479 kb on - strand at 397.479 kb on - strand at 397.479 kb on - strand at 397.490 kb on + strand at 397.490 kb on + strand at 397.490 kb on + strand at 397.491 kb on - strand at 397.492 kb on + strand at 397.493 kb on - strand at 397.495 kb on - strand at 397.495 kb on - strand at 397.495 kb on - strand at 397.510 kb on - strand at 397.524 kb on + strand at 397.524 kb on + strand at 397.525 kb on - strand at 397.565 kb on + strand, within BACOVA_04067 at 397.566 kb on - strand, within BACOVA_04067 at 397.588 kb on - strand, within BACOVA_04067 at 397.643 kb on + strand, within BACOVA_04067 at 397.669 kb on - strand, within BACOVA_04067 at 397.678 kb on - strand, within BACOVA_04067 at 397.709 kb on - strand, within BACOVA_04067 at 397.731 kb on - strand, within BACOVA_04067 at 397.787 kb on - strand, within BACOVA_04067 at 397.857 kb on - strand, within BACOVA_04067 at 397.860 kb on + strand, within BACOVA_04067 at 397.876 kb on - strand, within BACOVA_04067 at 397.947 kb on + strand at 397.948 kb on - strand at 397.969 kb on - strand at 398.030 kb on + strand at 398.031 kb on - strand at 398.044 kb on + strand at 398.051 kb on - strand at 398.072 kb on - strand, within BACOVA_04068 at 398.130 kb on + strand, within BACOVA_04068 at 398.154 kb on + strand, within BACOVA_04068 at 398.155 kb on - strand, within BACOVA_04068 at 398.181 kb on - strand, within BACOVA_04068 at 398.248 kb on - strand, within BACOVA_04068 at 398.319 kb on - strand, within BACOVA_04068 at 398.356 kb on + strand, within BACOVA_04068 at 398.357 kb on - strand, within BACOVA_04068 at 398.363 kb on + strand, within BACOVA_04068 at 398.431 kb on - strand at 398.436 kb on + strand at 398.476 kb on + strand at 398.476 kb on + strand at 398.477 kb on - strand at 398.477 kb on - strand at 398.478 kb on + strand at 398.507 kb on + strand at 398.513 kb on + strand at 398.526 kb on - strand at 398.528 kb on + strand at 398.528 kb on + strand at 398.530 kb on + strand at 398.530 kb on + strand at 398.530 kb on + strand at 398.530 kb on + strand at 398.530 kb on + strand at 398.531 kb on - strand at 398.531 kb on - strand at 398.531 kb on - strand at 398.532 kb on + strand at 398.533 kb on - strand at 398.533 kb on - strand at 398.552 kb on + strand at 398.577 kb on - strand, within BACOVA_04069 at 398.577 kb on - strand, within BACOVA_04069 at 398.589 kb on + strand, within BACOVA_04069 at 398.590 kb on - strand, within BACOVA_04069 at 398.590 kb on - strand, within BACOVA_04069 at 398.615 kb on - strand, within BACOVA_04069 at 398.641 kb on - strand, within BACOVA_04069 at 398.654 kb on + strand, within BACOVA_04069 at 398.670 kb on + strand, within BACOVA_04069 at 398.671 kb on - strand, within BACOVA_04069 at 398.671 kb on - strand, within BACOVA_04069 at 398.674 kb on + strand, within BACOVA_04069 at 398.696 kb on + strand, within BACOVA_04069 at 398.696 kb on + strand, within BACOVA_04069 at 398.696 kb on + strand, within BACOVA_04069 at 398.713 kb on + strand, within BACOVA_04069 at 398.761 kb on - strand, within BACOVA_04069 at 398.801 kb on + strand, within BACOVA_04069 at 398.803 kb on + strand, within BACOVA_04069 at 398.803 kb on + strand, within BACOVA_04069 at 398.804 kb on - strand, within BACOVA_04069 at 398.858 kb on + strand, within BACOVA_04069 at 398.862 kb on - strand, within BACOVA_04069 at 398.908 kb on + strand, within BACOVA_04069 at 398.908 kb on + strand, within BACOVA_04069 at 398.908 kb on + strand, within BACOVA_04069 at 398.908 kb on + strand, within BACOVA_04069 at 398.912 kb on + strand, within BACOVA_04069 at 398.912 kb on + strand, within BACOVA_04069 at 398.913 kb on - strand, within BACOVA_04069 at 398.957 kb on + strand, within BACOVA_04069 at 398.987 kb on + strand, within BACOVA_04069 at 398.987 kb on + strand, within BACOVA_04069 at 398.987 kb on + strand, within BACOVA_04069 at 398.987 kb on + strand, within BACOVA_04069 at 398.988 kb on - strand, within BACOVA_04069 at 398.988 kb on - strand, within BACOVA_04069 at 398.991 kb on + strand, within BACOVA_04069 at 398.992 kb on - strand, within BACOVA_04069 at 398.993 kb on + strand, within BACOVA_04069 at 398.994 kb on - strand, within BACOVA_04069 at 399.016 kb on - strand, within BACOVA_04069 at 399.021 kb on - strand, within BACOVA_04069 at 399.025 kb on - strand, within BACOVA_04069 at 399.025 kb on - strand, within BACOVA_04069 at 399.027 kb on - strand, within BACOVA_04069 at 399.060 kb on - strand, within BACOVA_04069 at 399.060 kb on - strand, within BACOVA_04069 at 399.071 kb on + strand, within BACOVA_04069 at 399.075 kb on + strand, within BACOVA_04069 at 399.097 kb on + strand, within BACOVA_04069 at 399.129 kb on + strand, within BACOVA_04069 at 399.129 kb on + strand, within BACOVA_04069 at 399.129 kb on + strand, within BACOVA_04069 at 399.130 kb on - strand, within BACOVA_04069 at 399.140 kb on - strand, within BACOVA_04069 at 399.150 kb on + strand, within BACOVA_04069 at 399.151 kb on - strand, within BACOVA_04069 at 399.151 kb on - strand, within BACOVA_04069 at 399.153 kb on + strand, within BACOVA_04069 at 399.251 kb on + strand, within BACOVA_04069 at 399.300 kb on - strand, within BACOVA_04069 at 399.300 kb on - strand, within BACOVA_04069 at 399.300 kb on - strand, within BACOVA_04069 at 399.303 kb on + strand, within BACOVA_04069 at 399.303 kb on + strand, within BACOVA_04069 at 399.303 kb on + strand, within BACOVA_04069 at 399.304 kb on - strand, within BACOVA_04069 at 399.304 kb on - strand, within BACOVA_04069 at 399.311 kb on + strand, within BACOVA_04069 at 399.312 kb on - strand, within BACOVA_04069 at 399.356 kb on + strand, within BACOVA_04069 at 399.356 kb on + strand, within BACOVA_04069 at 399.357 kb on - strand, within BACOVA_04069 at 399.357 kb on - strand, within BACOVA_04069 at 399.537 kb on - strand, within BACOVA_04069 at 399.540 kb on + strand, within BACOVA_04069 at 399.573 kb on + strand, within BACOVA_04069 at 399.618 kb on + strand at 399.620 kb on + strand at 399.639 kb on - strand at 399.644 kb on + strand at 399.644 kb on + strand at 399.701 kb on + strand at 399.701 kb on + strand at 399.716 kb on + strand at 399.726 kb on + strand at 399.736 kb on + strand at 399.755 kb on - strand at 399.755 kb on - strand at 399.767 kb on + strand at 399.800 kb on + strand, within BACOVA_04070 at 399.801 kb on - strand, within BACOVA_04070 at 399.813 kb on - strand, within BACOVA_04070 at 399.813 kb on - strand, within BACOVA_04070 at 399.894 kb on + strand, within BACOVA_04070 at 399.894 kb on + strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.895 kb on - strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.899 kb on + strand, within BACOVA_04070 at 399.903 kb on - strand, within BACOVA_04070 at 399.903 kb on - strand, within BACOVA_04070 at 399.907 kb on + strand, within BACOVA_04070 at 399.924 kb on - strand, within BACOVA_04070 at 399.942 kb on - strand, within BACOVA_04070 at 399.951 kb on - strand, within BACOVA_04070 at 399.953 kb on - strand, within BACOVA_04070 at 399.953 kb on - strand, within BACOVA_04070 at 399.980 kb on + strand, within BACOVA_04070 at 399.983 kb on - strand, within BACOVA_04070 at 400.081 kb on + strand, within BACOVA_04070 at 400.130 kb on - strand, within BACOVA_04070 at 400.283 kb on + strand at 400.296 kb on - strand at 400.296 kb on - strand at 400.298 kb on - strand at 400.298 kb on - strand at 400.299 kb on + strand at 400.299 kb on + strand at 400.299 kb on + strand at 400.301 kb on + strand at 400.302 kb on - strand at 400.342 kb on - strand at 400.391 kb on - strand at 400.401 kb on + strand at 400.443 kb on - strand at 400.561 kb on + strand at 400.561 kb on + strand at 400.562 kb on - strand at 400.566 kb on - strand at 400.566 kb on - strand at 400.574 kb on + strand at 400.580 kb on - strand at 400.618 kb on - strand at 400.698 kb on - strand at 400.707 kb on - strand at 400.709 kb on - strand at 400.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C) remove 397,447 + -0.3 397,478 + +1.3 397,479 - -0.9 397,479 - -0.9 397,479 - -0.1 397,490 + -0.3 397,490 + +0.0 397,490 + +0.5 397,491 - -0.1 397,492 + -0.3 397,493 - +1.0 397,495 - +0.3 397,495 - +0.3 397,495 - -1.8 397,510 - -0.1 397,524 + +0.9 397,524 + -0.7 397,525 - -1.1 397,565 + BACOVA_04067 0.13 -0.6 397,566 - BACOVA_04067 0.13 -1.0 397,588 - BACOVA_04067 0.19 +0.7 397,643 + BACOVA_04067 0.32 -0.6 397,669 - BACOVA_04067 0.39 -1.5 397,678 - BACOVA_04067 0.41 -0.7 397,709 - BACOVA_04067 0.49 -1.8 397,731 - BACOVA_04067 0.54 -0.6 397,787 - BACOVA_04067 0.68 +0.9 397,857 - BACOVA_04067 0.85 -1.7 397,860 + BACOVA_04067 0.86 +0.3 397,876 - BACOVA_04067 0.89 -0.2 397,947 + +1.3 397,948 - +1.6 397,969 - +1.3 398,030 + -0.7 398,031 - +0.7 398,044 + -0.6 398,051 - -0.3 398,072 - BACOVA_04068 0.10 +1.3 398,130 + BACOVA_04068 0.24 -0.9 398,154 + BACOVA_04068 0.30 +1.3 398,155 - BACOVA_04068 0.30 -0.7 398,181 - BACOVA_04068 0.37 +0.3 398,248 - BACOVA_04068 0.53 +0.5 398,319 - BACOVA_04068 0.71 -0.1 398,356 + BACOVA_04068 0.80 -0.9 398,357 - BACOVA_04068 0.80 +0.0 398,363 + BACOVA_04068 0.81 -0.7 398,431 - +0.4 398,436 + -0.2 398,476 + -0.3 398,476 + -0.8 398,477 - -0.3 398,477 - -0.7 398,478 + +0.1 398,507 + +0.3 398,513 + +2.3 398,526 - +1.1 398,528 + -0.2 398,528 + -2.2 398,530 + +2.1 398,530 + -0.6 398,530 + +0.3 398,530 + -0.5 398,530 + +0.1 398,531 - +2.3 398,531 - -2.7 398,531 - +1.3 398,532 + -0.2 398,533 - -0.2 398,533 - -1.0 398,552 + +2.6 398,577 - BACOVA_04069 0.10 +0.9 398,577 - BACOVA_04069 0.10 +1.4 398,589 + BACOVA_04069 0.11 +0.8 398,590 - BACOVA_04069 0.11 +0.3 398,590 - BACOVA_04069 0.11 -1.6 398,615 - BACOVA_04069 0.13 +1.3 398,641 - BACOVA_04069 0.15 +0.0 398,654 + BACOVA_04069 0.16 +0.0 398,670 + BACOVA_04069 0.17 +0.1 398,671 - BACOVA_04069 0.18 -0.1 398,671 - BACOVA_04069 0.18 +0.3 398,674 + BACOVA_04069 0.18 -0.3 398,696 + BACOVA_04069 0.19 +0.5 398,696 + BACOVA_04069 0.19 +0.5 398,696 + BACOVA_04069 0.19 +0.7 398,713 + BACOVA_04069 0.21 +1.0 398,761 - BACOVA_04069 0.24 +0.1 398,801 + BACOVA_04069 0.28 -0.2 398,803 + BACOVA_04069 0.28 +0.3 398,803 + BACOVA_04069 0.28 +1.0 398,804 - BACOVA_04069 0.28 +0.8 398,858 + BACOVA_04069 0.32 -0.0 398,862 - BACOVA_04069 0.32 +1.0 398,908 + BACOVA_04069 0.36 +0.7 398,908 + BACOVA_04069 0.36 -0.2 398,908 + BACOVA_04069 0.36 -1.5 398,908 + BACOVA_04069 0.36 +0.2 398,912 + BACOVA_04069 0.36 +0.1 398,912 + BACOVA_04069 0.36 +0.3 398,913 - BACOVA_04069 0.36 -1.2 398,957 + BACOVA_04069 0.39 +1.7 398,987 + BACOVA_04069 0.42 -0.6 398,987 + BACOVA_04069 0.42 -1.5 398,987 + BACOVA_04069 0.42 +0.7 398,987 + BACOVA_04069 0.42 -0.3 398,988 - BACOVA_04069 0.42 +0.5 398,988 - BACOVA_04069 0.42 -0.6 398,991 + BACOVA_04069 0.42 +0.3 398,992 - BACOVA_04069 0.42 -0.1 398,993 + BACOVA_04069 0.42 -0.6 398,994 - BACOVA_04069 0.42 -1.0 399,016 - BACOVA_04069 0.44 +2.1 399,021 - BACOVA_04069 0.44 +0.4 399,025 - BACOVA_04069 0.45 +0.3 399,025 - BACOVA_04069 0.45 -0.7 399,027 - BACOVA_04069 0.45 -0.3 399,060 - BACOVA_04069 0.47 -0.6 399,060 - BACOVA_04069 0.47 -1.3 399,071 + BACOVA_04069 0.48 +0.5 399,075 + BACOVA_04069 0.49 -1.2 399,097 + BACOVA_04069 0.50 -0.4 399,129 + BACOVA_04069 0.53 -0.2 399,129 + BACOVA_04069 0.53 -0.2 399,129 + BACOVA_04069 0.53 -1.9 399,130 - BACOVA_04069 0.53 +0.6 399,140 - BACOVA_04069 0.53 +1.4 399,150 + BACOVA_04069 0.54 +0.6 399,151 - BACOVA_04069 0.54 +1.1 399,151 - BACOVA_04069 0.54 +0.3 399,153 + BACOVA_04069 0.54 -0.7 399,251 + BACOVA_04069 0.62 -1.4 399,300 - BACOVA_04069 0.66 +0.7 399,300 - BACOVA_04069 0.66 +0.4 399,300 - BACOVA_04069 0.66 +0.7 399,303 + BACOVA_04069 0.66 -1.1 399,303 + BACOVA_04069 0.66 +1.8 399,303 + BACOVA_04069 0.66 -0.1 399,304 - BACOVA_04069 0.66 -0.6 399,304 - BACOVA_04069 0.66 -1.6 399,311 + BACOVA_04069 0.67 +0.8 399,312 - BACOVA_04069 0.67 +0.4 399,356 + BACOVA_04069 0.70 -1.6 399,356 + BACOVA_04069 0.70 +0.4 399,357 - BACOVA_04069 0.70 +0.3 399,357 - BACOVA_04069 0.70 -1.1 399,537 - BACOVA_04069 0.84 +0.3 399,540 + BACOVA_04069 0.84 +0.4 399,573 + BACOVA_04069 0.87 +1.6 399,618 + -0.5 399,620 + +2.8 399,639 - -1.3 399,644 + -1.1 399,644 + -0.7 399,701 + +1.4 399,701 + +0.8 399,716 + +0.0 399,726 + +0.8 399,736 + +0.3 399,755 - +0.7 399,755 - -1.3 399,767 + +0.4 399,800 + BACOVA_04070 0.10 +0.8 399,801 - BACOVA_04070 0.11 +1.1 399,813 - BACOVA_04070 0.13 +0.3 399,813 - BACOVA_04070 0.13 +0.3 399,894 + BACOVA_04070 0.28 -0.1 399,894 + BACOVA_04070 0.28 +0.7 399,895 - BACOVA_04070 0.28 +1.0 399,895 - BACOVA_04070 0.28 +0.7 399,895 - BACOVA_04070 0.28 +0.0 399,899 + BACOVA_04070 0.29 -0.5 399,899 + BACOVA_04070 0.29 -0.2 399,899 + BACOVA_04070 0.29 -0.0 399,903 - BACOVA_04070 0.29 +0.8 399,903 - BACOVA_04070 0.29 -0.1 399,907 + BACOVA_04070 0.30 -0.9 399,924 - BACOVA_04070 0.33 +0.9 399,942 - BACOVA_04070 0.37 -0.1 399,951 - BACOVA_04070 0.38 +0.0 399,953 - BACOVA_04070 0.39 -0.2 399,953 - BACOVA_04070 0.39 -0.3 399,980 + BACOVA_04070 0.44 -0.7 399,983 - BACOVA_04070 0.44 +0.9 400,081 + BACOVA_04070 0.62 -0.7 400,130 - BACOVA_04070 0.71 +0.9 400,283 + +0.7 400,296 - +1.0 400,296 - +0.6 400,298 - +0.7 400,298 - +1.4 400,299 + +0.3 400,299 + -0.8 400,299 + -0.2 400,301 + -0.3 400,302 - +0.3 400,342 - -0.4 400,391 - -0.1 400,401 + +0.2 400,443 - -1.0 400,561 + -1.7 400,561 + -1.7 400,562 - -0.6 400,566 - +0.3 400,566 - -0.9 400,574 + -0.3 400,580 - +0.7 400,618 - -0.1 400,698 - +0.7 400,707 - +0.0 400,709 - +2.0 400,727 - +0.3
Or see this region's nucleotide sequence