Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02789

Experiment: Tara gum 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02788 and BACOVA_02789 are separated by 170 nucleotidesBACOVA_02789 and BACOVA_02790 are separated by 90 nucleotidesBACOVA_02790 and BACOVA_02791 are separated by 15 nucleotides BACOVA_02788: BACOVA_02788 - hypothetical protein, at 241,915 to 243,564 _02788 BACOVA_02789: BACOVA_02789 - hypothetical protein, at 243,735 to 244,868 _02789 BACOVA_02790: BACOVA_02790 - hypothetical protein, at 244,959 to 245,096 _02790 BACOVA_02791: BACOVA_02791 - hypothetical protein, at 245,112 to 246,839 _02791 Position (kb) 243 244 245Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 242.772 kb on - strand, within BACOVA_02788at 242.874 kb on - strand, within BACOVA_02788at 242.877 kb on + strand, within BACOVA_02788at 242.878 kb on - strand, within BACOVA_02788at 242.878 kb on - strand, within BACOVA_02788at 242.878 kb on - strand, within BACOVA_02788at 242.919 kb on - strand, within BACOVA_02788at 242.919 kb on - strand, within BACOVA_02788at 242.922 kb on - strand, within BACOVA_02788at 242.952 kb on - strand, within BACOVA_02788at 242.952 kb on - strand, within BACOVA_02788at 242.963 kb on - strand, within BACOVA_02788at 242.967 kb on + strand, within BACOVA_02788at 242.968 kb on - strand, within BACOVA_02788at 242.974 kb on - strand, within BACOVA_02788at 242.974 kb on - strand, within BACOVA_02788at 243.057 kb on - strand, within BACOVA_02788at 243.059 kb on + strand, within BACOVA_02788at 243.060 kb on - strand, within BACOVA_02788at 243.090 kb on - strand, within BACOVA_02788at 243.107 kb on + strand, within BACOVA_02788at 243.128 kb on + strand, within BACOVA_02788at 243.128 kb on + strand, within BACOVA_02788at 243.129 kb on - strand, within BACOVA_02788at 243.132 kb on - strand, within BACOVA_02788at 243.132 kb on - strand, within BACOVA_02788at 243.132 kb on - strand, within BACOVA_02788at 243.132 kb on - strand, within BACOVA_02788at 243.132 kb on - strand, within BACOVA_02788at 243.134 kb on + strand, within BACOVA_02788at 243.135 kb on - strand, within BACOVA_02788at 243.140 kb on + strand, within BACOVA_02788at 243.181 kb on + strand, within BACOVA_02788at 243.181 kb on + strand, within BACOVA_02788at 243.181 kb on + strand, within BACOVA_02788at 243.181 kb on + strand, within BACOVA_02788at 243.182 kb on - strand, within BACOVA_02788at 243.182 kb on - strand, within BACOVA_02788at 243.200 kb on + strand, within BACOVA_02788at 243.200 kb on + strand, within BACOVA_02788at 243.254 kb on + strand, within BACOVA_02788at 243.265 kb on - strand, within BACOVA_02788at 243.302 kb on + strand, within BACOVA_02788at 243.326 kb on + strand, within BACOVA_02788at 243.366 kb on - strand, within BACOVA_02788at 243.463 kb on - strandat 243.463 kb on - strandat 243.493 kb on - strandat 243.498 kb on + strandat 243.572 kb on + strandat 243.581 kb on + strandat 243.581 kb on + strandat 243.582 kb on - strandat 243.582 kb on - strandat 243.582 kb on - strandat 243.594 kb on - strandat 243.660 kb on - strandat 243.673 kb on - strandat 243.688 kb on + strandat 243.749 kb on + strandat 243.758 kb on + strandat 243.759 kb on - strandat 243.771 kb on + strandat 243.775 kb on + strandat 243.776 kb on - strandat 243.786 kb on + strandat 243.787 kb on - strandat 243.823 kb on + strandat 243.823 kb on + strandat 243.930 kb on + strand, within BACOVA_02789at 243.931 kb on - strand, within BACOVA_02789at 243.934 kb on - strand, within BACOVA_02789at 243.936 kb on - strand, within BACOVA_02789at 243.955 kb on - strand, within BACOVA_02789at 244.083 kb on - strand, within BACOVA_02789at 244.140 kb on - strand, within BACOVA_02789at 244.199 kb on + strand, within BACOVA_02789at 244.199 kb on + strand, within BACOVA_02789at 244.200 kb on - strand, within BACOVA_02789at 244.228 kb on + strand, within BACOVA_02789at 244.237 kb on - strand, within BACOVA_02789at 244.252 kb on + strand, within BACOVA_02789at 244.253 kb on - strand, within BACOVA_02789at 244.253 kb on - strand, within BACOVA_02789at 244.271 kb on + strand, within BACOVA_02789at 244.272 kb on - strand, within BACOVA_02789at 244.328 kb on + strand, within BACOVA_02789at 244.337 kb on + strand, within BACOVA_02789at 244.413 kb on + strand, within BACOVA_02789at 244.414 kb on - strand, within BACOVA_02789at 244.449 kb on - strand, within BACOVA_02789at 244.484 kb on - strand, within BACOVA_02789at 244.512 kb on + strand, within BACOVA_02789at 244.513 kb on - strand, within BACOVA_02789at 244.516 kb on + strand, within BACOVA_02789at 244.516 kb on + strand, within BACOVA_02789at 244.516 kb on + strand, within BACOVA_02789at 244.517 kb on - strand, within BACOVA_02789at 244.529 kb on + strand, within BACOVA_02789at 244.530 kb on - strand, within BACOVA_02789at 244.538 kb on - strand, within BACOVA_02789at 244.539 kb on + strand, within BACOVA_02789at 244.540 kb on - strand, within BACOVA_02789at 244.542 kb on - strand, within BACOVA_02789at 244.724 kb on + strand, within BACOVA_02789at 244.741 kb on + strand, within BACOVA_02789at 244.741 kb on + strand, within BACOVA_02789at 244.741 kb on + strand, within BACOVA_02789at 244.742 kb on - strand, within BACOVA_02789at 244.742 kb on - strand, within BACOVA_02789at 244.867 kb on - strandat 244.873 kb on + strandat 244.895 kb on - strandat 244.900 kb on + strandat 244.901 kb on - strandat 244.901 kb on - strandat 244.930 kb on + strandat 244.948 kb on - strandat 244.956 kb on + strandat 244.990 kb on + strand, within BACOVA_02790at 244.991 kb on - strand, within BACOVA_02790at 244.991 kb on - strand, within BACOVA_02790at 245.058 kb on + strand, within BACOVA_02790at 245.074 kb on + strand, within BACOVA_02790at 245.085 kb on + strandat 245.111 kb on + strandat 245.111 kb on + strandat 245.190 kb on - strandat 245.617 kb on - strand, within BACOVA_02791

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Per-strain Table

Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C)
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242,772 - BACOVA_02788 0.52 +1.8
242,874 - BACOVA_02788 0.58 -0.3
242,877 + BACOVA_02788 0.58 -0.2
242,878 - BACOVA_02788 0.58 -0.4
242,878 - BACOVA_02788 0.58 +0.4
242,878 - BACOVA_02788 0.58 -0.0
242,919 - BACOVA_02788 0.61 -0.4
242,919 - BACOVA_02788 0.61 +0.4
242,922 - BACOVA_02788 0.61 -0.4
242,952 - BACOVA_02788 0.63 +0.3
242,952 - BACOVA_02788 0.63 -1.2
242,963 - BACOVA_02788 0.64 -0.3
242,967 + BACOVA_02788 0.64 +0.6
242,968 - BACOVA_02788 0.64 +0.1
242,974 - BACOVA_02788 0.64 -0.1
242,974 - BACOVA_02788 0.64 +0.2
243,057 - BACOVA_02788 0.69 -0.0
243,059 + BACOVA_02788 0.69 +0.4
243,060 - BACOVA_02788 0.69 +1.1
243,090 - BACOVA_02788 0.71 -0.1
243,107 + BACOVA_02788 0.72 +0.0
243,128 + BACOVA_02788 0.74 -2.8
243,128 + BACOVA_02788 0.74 +0.2
243,129 - BACOVA_02788 0.74 +0.7
243,132 - BACOVA_02788 0.74 -0.4
243,132 - BACOVA_02788 0.74 -0.7
243,132 - BACOVA_02788 0.74 +3.4
243,132 - BACOVA_02788 0.74 +0.4
243,132 - BACOVA_02788 0.74 +0.0
243,134 + BACOVA_02788 0.74 -0.8
243,135 - BACOVA_02788 0.74 +0.5
243,140 + BACOVA_02788 0.74 -0.2
243,181 + BACOVA_02788 0.77 -0.2
243,181 + BACOVA_02788 0.77 +0.7
243,181 + BACOVA_02788 0.77 +1.6
243,181 + BACOVA_02788 0.77 -1.1
243,182 - BACOVA_02788 0.77 +1.4
243,182 - BACOVA_02788 0.77 -0.1
243,200 + BACOVA_02788 0.78 +0.3
243,200 + BACOVA_02788 0.78 -0.8
243,254 + BACOVA_02788 0.81 +0.4
243,265 - BACOVA_02788 0.82 -0.6
243,302 + BACOVA_02788 0.84 -0.2
243,326 + BACOVA_02788 0.86 -0.3
243,366 - BACOVA_02788 0.88 -0.1
243,463 - -1.9
243,463 - +0.7
243,493 - -0.7
243,498 + -0.6
243,572 + +1.2
243,581 + +0.2
243,581 + +0.2
243,582 - +0.3
243,582 - -0.1
243,582 - -0.8
243,594 - -1.0
243,660 - +0.4
243,673 - -1.8
243,688 + -0.5
243,749 + -0.3
243,758 + +0.8
243,759 - +0.5
243,771 + -0.1
243,775 + +0.6
243,776 - +0.4
243,786 + -0.9
243,787 - -0.6
243,823 + +0.6
243,823 + -0.2
243,930 + BACOVA_02789 0.17 +0.4
243,931 - BACOVA_02789 0.17 -0.1
243,934 - BACOVA_02789 0.18 +0.1
243,936 - BACOVA_02789 0.18 +0.1
243,955 - BACOVA_02789 0.19 +0.8
244,083 - BACOVA_02789 0.31 +1.1
244,140 - BACOVA_02789 0.36 +0.3
244,199 + BACOVA_02789 0.41 -0.8
244,199 + BACOVA_02789 0.41 +0.8
244,200 - BACOVA_02789 0.41 -1.8
244,228 + BACOVA_02789 0.43 +0.4
244,237 - BACOVA_02789 0.44 -0.0
244,252 + BACOVA_02789 0.46 -0.4
244,253 - BACOVA_02789 0.46 -0.2
244,253 - BACOVA_02789 0.46 -0.6
244,271 + BACOVA_02789 0.47 -0.2
244,272 - BACOVA_02789 0.47 -0.6
244,328 + BACOVA_02789 0.52 +0.1
244,337 + BACOVA_02789 0.53 -0.7
244,413 + BACOVA_02789 0.60 +1.2
244,414 - BACOVA_02789 0.60 -0.8
244,449 - BACOVA_02789 0.63 +1.4
244,484 - BACOVA_02789 0.66 +0.0
244,512 + BACOVA_02789 0.69 +0.1
244,513 - BACOVA_02789 0.69 -0.2
244,516 + BACOVA_02789 0.69 -1.6
244,516 + BACOVA_02789 0.69 +1.0
244,516 + BACOVA_02789 0.69 +0.4
244,517 - BACOVA_02789 0.69 +0.4
244,529 + BACOVA_02789 0.70 +1.1
244,530 - BACOVA_02789 0.70 -1.2
244,538 - BACOVA_02789 0.71 +0.4
244,539 + BACOVA_02789 0.71 -0.9
244,540 - BACOVA_02789 0.71 -0.3
244,542 - BACOVA_02789 0.71 +0.8
244,724 + BACOVA_02789 0.87 -0.1
244,741 + BACOVA_02789 0.89 -0.6
244,741 + BACOVA_02789 0.89 -0.0
244,741 + BACOVA_02789 0.89 -0.7
244,742 - BACOVA_02789 0.89 -0.4
244,742 - BACOVA_02789 0.89 -0.8
244,867 - -0.8
244,873 + -0.0
244,895 - -0.7
244,900 + +0.7
244,901 - -0.6
244,901 - +0.6
244,930 + -0.1
244,948 - -0.1
244,956 + +1.2
244,990 + BACOVA_02790 0.22 -2.5
244,991 - BACOVA_02790 0.23 -0.0
244,991 - BACOVA_02790 0.23 +0.4
245,058 + BACOVA_02790 0.72 -0.6
245,074 + BACOVA_02790 0.83 -0.6
245,085 + +0.1
245,111 + -2.2
245,111 + -0.6
245,190 - -0.2
245,617 - BACOVA_02791 0.29 +1.1

Or see this region's nucleotide sequence