Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02290

Experiment: Tara gum 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02289 and BACOVA_02290 are separated by 359 nucleotidesBACOVA_02290 and BACOVA_02291 are separated by 16 nucleotidesBACOVA_02291 and BACOVA_02292 overlap by 4 nucleotides BACOVA_02289: BACOVA_02289 - hypothetical protein, at 59,232 to 59,987 _02289 BACOVA_02290: BACOVA_02290 - hypothetical protein, at 60,347 to 61,903 _02290 BACOVA_02291: BACOVA_02291 - hypothetical protein, at 61,920 to 62,789 _02291 BACOVA_02292: BACOVA_02292 - hypothetical protein, at 62,786 to 63,763 _02292 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 59.389 kb on - strand, within BACOVA_02289at 59.408 kb on + strand, within BACOVA_02289at 59.409 kb on - strand, within BACOVA_02289at 59.616 kb on + strand, within BACOVA_02289at 59.841 kb on - strand, within BACOVA_02289at 60.079 kb on - strandat 60.079 kb on - strandat 60.329 kb on - strandat 60.352 kb on + strandat 60.353 kb on - strandat 60.462 kb on - strandat 60.502 kb on - strandat 60.562 kb on - strand, within BACOVA_02290at 60.675 kb on + strand, within BACOVA_02290at 60.728 kb on - strand, within BACOVA_02290at 61.030 kb on - strand, within BACOVA_02290at 61.221 kb on + strand, within BACOVA_02290at 61.310 kb on - strand, within BACOVA_02290at 61.310 kb on - strand, within BACOVA_02290at 61.430 kb on + strand, within BACOVA_02290at 61.431 kb on - strand, within BACOVA_02290at 61.542 kb on + strand, within BACOVA_02290at 61.542 kb on + strand, within BACOVA_02290at 61.608 kb on - strand, within BACOVA_02290at 61.778 kb on + strandat 61.805 kb on - strandat 61.823 kb on - strandat 61.968 kb on - strandat 61.968 kb on - strandat 61.973 kb on - strandat 62.013 kb on + strand, within BACOVA_02291at 62.014 kb on - strand, within BACOVA_02291at 62.014 kb on - strand, within BACOVA_02291at 62.039 kb on + strand, within BACOVA_02291at 62.039 kb on + strand, within BACOVA_02291at 62.039 kb on + strand, within BACOVA_02291at 62.039 kb on + strand, within BACOVA_02291at 62.053 kb on + strand, within BACOVA_02291at 62.071 kb on - strand, within BACOVA_02291at 62.096 kb on + strand, within BACOVA_02291at 62.097 kb on - strand, within BACOVA_02291at 62.097 kb on - strand, within BACOVA_02291at 62.099 kb on - strand, within BACOVA_02291at 62.099 kb on - strand, within BACOVA_02291at 62.099 kb on - strand, within BACOVA_02291at 62.100 kb on + strand, within BACOVA_02291at 62.100 kb on + strand, within BACOVA_02291at 62.101 kb on - strand, within BACOVA_02291at 62.101 kb on - strand, within BACOVA_02291at 62.117 kb on + strand, within BACOVA_02291at 62.117 kb on + strand, within BACOVA_02291at 62.118 kb on - strand, within BACOVA_02291at 62.121 kb on + strand, within BACOVA_02291at 62.122 kb on - strand, within BACOVA_02291at 62.190 kb on + strand, within BACOVA_02291at 62.193 kb on + strand, within BACOVA_02291at 62.209 kb on + strand, within BACOVA_02291at 62.232 kb on + strand, within BACOVA_02291at 62.258 kb on + strand, within BACOVA_02291at 62.259 kb on - strand, within BACOVA_02291at 62.263 kb on - strand, within BACOVA_02291at 62.295 kb on - strand, within BACOVA_02291at 62.336 kb on + strand, within BACOVA_02291at 62.351 kb on - strand, within BACOVA_02291at 62.355 kb on + strand, within BACOVA_02291at 62.356 kb on - strand, within BACOVA_02291at 62.356 kb on - strand, within BACOVA_02291at 62.378 kb on + strand, within BACOVA_02291at 62.383 kb on + strand, within BACOVA_02291at 62.384 kb on - strand, within BACOVA_02291at 62.512 kb on - strand, within BACOVA_02291at 62.525 kb on + strand, within BACOVA_02291at 62.541 kb on - strand, within BACOVA_02291at 62.550 kb on - strand, within BACOVA_02291at 62.551 kb on + strand, within BACOVA_02291at 62.551 kb on + strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.562 kb on - strand, within BACOVA_02291at 62.562 kb on - strand, within BACOVA_02291at 62.590 kb on - strand, within BACOVA_02291at 62.650 kb on - strand, within BACOVA_02291at 62.723 kb on + strandat 62.729 kb on + strandat 62.729 kb on + strandat 62.735 kb on + strandat 62.736 kb on - strandat 62.745 kb on - strandat 62.765 kb on + strandat 62.765 kb on + strandat 62.765 kb on + strandat 62.766 kb on - strandat 62.766 kb on - strandat 62.766 kb on - strandat 62.823 kb on + strandat 62.823 kb on + strandat 62.849 kb on - strandat 62.852 kb on - strandat 62.864 kb on + strandat 62.865 kb on - strandat 62.899 kb on + strand, within BACOVA_02292at 62.902 kb on - strand, within BACOVA_02292

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Per-strain Table

Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C)
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59,389 - BACOVA_02289 0.21 -0.8
59,408 + BACOVA_02289 0.23 -0.8
59,409 - BACOVA_02289 0.23 +0.6
59,616 + BACOVA_02289 0.51 -1.2
59,841 - BACOVA_02289 0.81 +1.0
60,079 - -0.7
60,079 - +0.5
60,329 - +0.1
60,352 + -1.1
60,353 - +0.4
60,462 - -1.3
60,502 - +0.2
60,562 - BACOVA_02290 0.14 -1.4
60,675 + BACOVA_02290 0.21 -0.7
60,728 - BACOVA_02290 0.24 -0.1
61,030 - BACOVA_02290 0.44 +0.2
61,221 + BACOVA_02290 0.56 -1.4
61,310 - BACOVA_02290 0.62 +0.1
61,310 - BACOVA_02290 0.62 -0.5
61,430 + BACOVA_02290 0.70 +0.2
61,431 - BACOVA_02290 0.70 +0.6
61,542 + BACOVA_02290 0.77 +0.0
61,542 + BACOVA_02290 0.77 -0.4
61,608 - BACOVA_02290 0.81 -0.6
61,778 + +1.6
61,805 - -0.1
61,823 - +0.0
61,968 - -0.8
61,968 - +1.1
61,973 - -0.8
62,013 + BACOVA_02291 0.11 -2.8
62,014 - BACOVA_02291 0.11 +0.2
62,014 - BACOVA_02291 0.11 +0.4
62,039 + BACOVA_02291 0.14 -0.2
62,039 + BACOVA_02291 0.14 -0.4
62,039 + BACOVA_02291 0.14 -0.8
62,039 + BACOVA_02291 0.14 -1.6
62,053 + BACOVA_02291 0.15 -1.4
62,071 - BACOVA_02291 0.17 +0.6
62,096 + BACOVA_02291 0.20 -0.7
62,097 - BACOVA_02291 0.20 +0.5
62,097 - BACOVA_02291 0.20 +0.1
62,099 - BACOVA_02291 0.21 -0.6
62,099 - BACOVA_02291 0.21 +0.1
62,099 - BACOVA_02291 0.21 +0.4
62,100 + BACOVA_02291 0.21 +0.5
62,100 + BACOVA_02291 0.21 +0.5
62,101 - BACOVA_02291 0.21 -1.3
62,101 - BACOVA_02291 0.21 +1.2
62,117 + BACOVA_02291 0.23 -1.1
62,117 + BACOVA_02291 0.23 -0.5
62,118 - BACOVA_02291 0.23 +0.6
62,121 + BACOVA_02291 0.23 +2.0
62,122 - BACOVA_02291 0.23 +1.8
62,190 + BACOVA_02291 0.31 -0.9
62,193 + BACOVA_02291 0.31 -2.0
62,209 + BACOVA_02291 0.33 -0.1
62,232 + BACOVA_02291 0.36 +1.2
62,258 + BACOVA_02291 0.39 +0.0
62,259 - BACOVA_02291 0.39 +0.1
62,263 - BACOVA_02291 0.39 -1.1
62,295 - BACOVA_02291 0.43 -0.7
62,336 + BACOVA_02291 0.48 +0.7
62,351 - BACOVA_02291 0.50 -0.6
62,355 + BACOVA_02291 0.50 +0.9
62,356 - BACOVA_02291 0.50 +0.2
62,356 - BACOVA_02291 0.50 -1.1
62,378 + BACOVA_02291 0.53 +0.5
62,383 + BACOVA_02291 0.53 -0.5
62,384 - BACOVA_02291 0.53 +0.1
62,512 - BACOVA_02291 0.68 +0.5
62,525 + BACOVA_02291 0.70 +0.2
62,541 - BACOVA_02291 0.71 -0.1
62,550 - BACOVA_02291 0.72 +0.1
62,551 + BACOVA_02291 0.73 +1.2
62,551 + BACOVA_02291 0.73 -0.8
62,552 - BACOVA_02291 0.73 +0.6
62,552 - BACOVA_02291 0.73 -0.9
62,552 - BACOVA_02291 0.73 -1.4
62,552 - BACOVA_02291 0.73 -1.4
62,552 - BACOVA_02291 0.73 -0.4
62,552 - BACOVA_02291 0.73 -0.6
62,562 - BACOVA_02291 0.74 +0.8
62,562 - BACOVA_02291 0.74 -0.0
62,590 - BACOVA_02291 0.77 +2.8
62,650 - BACOVA_02291 0.84 +0.1
62,723 + +1.1
62,729 + -0.3
62,729 + -0.2
62,735 + -0.4
62,736 - -1.9
62,745 - -2.0
62,765 + +0.9
62,765 + -0.8
62,765 + -0.6
62,766 - -0.8
62,766 - +0.8
62,766 - -0.7
62,823 + +0.9
62,823 + +0.0
62,849 - -0.7
62,852 - +1.2
62,864 + +0.2
62,865 - +0.9
62,899 + BACOVA_02292 0.12 +0.5
62,902 - BACOVA_02292 0.12 -1.1

Or see this region's nucleotide sequence