Experiment: Tara gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01875 and BACOVA_01876 are separated by 25 nucleotides BACOVA_01876 and BACOVA_01877 are separated by 12 nucleotides BACOVA_01877 and BACOVA_01878 are separated by 206 nucleotides
BACOVA_01875: BACOVA_01875 - hypothetical protein, at 73,379 to 74,050
_01875
BACOVA_01876: BACOVA_01876 - hypothetical protein, at 74,076 to 75,107
_01876
BACOVA_01877: BACOVA_01877 - hypothetical protein, at 75,120 to 75,689
_01877
BACOVA_01878: BACOVA_01878 - hypothetical protein, at 75,896 to 77,356
_01878
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 73.106 kb on - strand at 73.122 kb on - strand at 73.133 kb on + strand at 73.144 kb on + strand at 73.180 kb on + strand at 73.202 kb on - strand at 73.217 kb on + strand at 73.221 kb on + strand at 73.221 kb on + strand at 73.222 kb on - strand at 73.222 kb on - strand at 73.271 kb on + strand at 73.272 kb on - strand at 73.272 kb on - strand at 73.279 kb on + strand at 73.346 kb on + strand at 73.347 kb on - strand at 73.347 kb on - strand at 73.361 kb on - strand at 73.374 kb on + strand at 73.523 kb on - strand, within BACOVA_01875 at 73.532 kb on - strand, within BACOVA_01875 at 73.562 kb on - strand, within BACOVA_01875 at 73.571 kb on - strand, within BACOVA_01875 at 73.603 kb on + strand, within BACOVA_01875 at 73.603 kb on + strand, within BACOVA_01875 at 73.625 kb on + strand, within BACOVA_01875 at 73.685 kb on + strand, within BACOVA_01875 at 73.737 kb on + strand, within BACOVA_01875 at 73.742 kb on + strand, within BACOVA_01875 at 73.742 kb on + strand, within BACOVA_01875 at 73.743 kb on - strand, within BACOVA_01875 at 73.743 kb on - strand, within BACOVA_01875 at 73.743 kb on - strand, within BACOVA_01875 at 73.805 kb on - strand, within BACOVA_01875 at 73.835 kb on + strand, within BACOVA_01875 at 73.929 kb on - strand, within BACOVA_01875 at 73.939 kb on + strand, within BACOVA_01875 at 73.943 kb on + strand, within BACOVA_01875 at 73.944 kb on - strand, within BACOVA_01875 at 74.001 kb on - strand at 74.012 kb on - strand at 74.033 kb on - strand at 74.033 kb on - strand at 74.035 kb on - strand at 74.037 kb on - strand at 74.037 kb on - strand at 74.061 kb on + strand at 74.064 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.073 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.154 kb on - strand at 74.206 kb on + strand, within BACOVA_01876 at 74.207 kb on - strand, within BACOVA_01876 at 74.218 kb on + strand, within BACOVA_01876 at 74.225 kb on + strand, within BACOVA_01876 at 74.226 kb on - strand, within BACOVA_01876 at 74.287 kb on + strand, within BACOVA_01876 at 74.305 kb on + strand, within BACOVA_01876 at 74.347 kb on + strand, within BACOVA_01876 at 74.348 kb on - strand, within BACOVA_01876 at 74.388 kb on + strand, within BACOVA_01876 at 74.389 kb on - strand, within BACOVA_01876 at 74.532 kb on - strand, within BACOVA_01876 at 74.532 kb on - strand, within BACOVA_01876 at 74.532 kb on - strand, within BACOVA_01876 at 74.536 kb on + strand, within BACOVA_01876 at 74.543 kb on + strand, within BACOVA_01876 at 74.543 kb on + strand, within BACOVA_01876 at 74.627 kb on + strand, within BACOVA_01876 at 74.650 kb on - strand, within BACOVA_01876 at 74.650 kb on - strand, within BACOVA_01876 at 74.692 kb on + strand, within BACOVA_01876 at 74.692 kb on + strand, within BACOVA_01876 at 74.733 kb on - strand, within BACOVA_01876 at 74.738 kb on + strand, within BACOVA_01876 at 74.739 kb on - strand, within BACOVA_01876 at 74.739 kb on - strand, within BACOVA_01876 at 74.739 kb on - strand, within BACOVA_01876 at 74.781 kb on + strand, within BACOVA_01876 at 74.781 kb on + strand, within BACOVA_01876 at 74.781 kb on + strand, within BACOVA_01876 at 74.782 kb on - strand, within BACOVA_01876 at 74.788 kb on + strand, within BACOVA_01876 at 74.808 kb on - strand, within BACOVA_01876 at 74.861 kb on - strand, within BACOVA_01876 at 74.965 kb on - strand, within BACOVA_01876 at 74.965 kb on - strand, within BACOVA_01876 at 74.983 kb on + strand, within BACOVA_01876 at 74.984 kb on - strand, within BACOVA_01876 at 74.984 kb on - strand, within BACOVA_01876 at 74.985 kb on + strand, within BACOVA_01876 at 74.986 kb on - strand, within BACOVA_01876 at 75.009 kb on + strand at 75.009 kb on + strand at 75.010 kb on - strand at 75.010 kb on - strand at 75.017 kb on + strand at 75.018 kb on - strand at 75.066 kb on + strand at 75.066 kb on + strand at 75.140 kb on - strand at 75.145 kb on + strand at 75.217 kb on + strand, within BACOVA_01877 at 75.246 kb on + strand, within BACOVA_01877 at 75.351 kb on - strand, within BACOVA_01877 at 75.351 kb on - strand, within BACOVA_01877 at 75.354 kb on + strand, within BACOVA_01877 at 75.355 kb on - strand, within BACOVA_01877 at 75.475 kb on - strand, within BACOVA_01877 at 75.582 kb on + strand, within BACOVA_01877 at 75.637 kb on + strand at 75.642 kb on + strand at 75.643 kb on - strand at 75.643 kb on - strand at 75.654 kb on - strand at 75.674 kb on - strand at 75.746 kb on + strand at 75.747 kb on - strand at 75.751 kb on - strand at 75.776 kb on - strand at 75.790 kb on - strand at 75.791 kb on + strand at 75.792 kb on - strand at 75.792 kb on - strand at 75.792 kb on - strand at 75.794 kb on + strand at 75.794 kb on + strand at 75.794 kb on + strand at 75.795 kb on - strand at 75.795 kb on - strand at 75.795 kb on - strand at 75.795 kb on - strand at 75.826 kb on - strand at 75.834 kb on + strand at 75.834 kb on + strand at 75.882 kb on - strand at 75.895 kb on + strand at 75.896 kb on - strand at 75.916 kb on + strand at 75.916 kb on + strand at 75.917 kb on - strand at 75.917 kb on - strand at 75.928 kb on + strand at 75.929 kb on - strand at 75.961 kb on + strand at 75.962 kb on - strand at 76.089 kb on + strand, within BACOVA_01878
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C) remove 73,106 - +0.5 73,122 - -0.5 73,133 + +1.1 73,144 + +1.1 73,180 + -0.3 73,202 - +0.8 73,217 + -0.5 73,221 + +0.8 73,221 + -1.5 73,222 - -1.2 73,222 - -0.1 73,271 + +0.2 73,272 - -0.1 73,272 - +1.0 73,279 + +1.5 73,346 + -0.8 73,347 - +0.5 73,347 - +0.1 73,361 - +0.9 73,374 + -2.0 73,523 - BACOVA_01875 0.21 +0.6 73,532 - BACOVA_01875 0.23 +0.9 73,562 - BACOVA_01875 0.27 -2.2 73,571 - BACOVA_01875 0.29 -1.5 73,603 + BACOVA_01875 0.33 -0.2 73,603 + BACOVA_01875 0.33 +0.0 73,625 + BACOVA_01875 0.37 -0.5 73,685 + BACOVA_01875 0.46 +0.3 73,737 + BACOVA_01875 0.53 +1.5 73,742 + BACOVA_01875 0.54 -1.8 73,742 + BACOVA_01875 0.54 -1.7 73,743 - BACOVA_01875 0.54 -1.3 73,743 - BACOVA_01875 0.54 +0.8 73,743 - BACOVA_01875 0.54 -0.0 73,805 - BACOVA_01875 0.63 -0.9 73,835 + BACOVA_01875 0.68 -1.5 73,929 - BACOVA_01875 0.82 -1.7 73,939 + BACOVA_01875 0.83 -0.1 73,943 + BACOVA_01875 0.84 -0.5 73,944 - BACOVA_01875 0.84 +2.9 74,001 - -0.1 74,012 - -1.3 74,033 - +1.0 74,033 - +0.5 74,035 - -0.8 74,037 - +0.5 74,037 - +1.3 74,061 + +0.9 74,064 + +1.2 74,072 + -1.0 74,072 + -1.7 74,073 - -1.8 74,142 - -1.4 74,142 - -0.9 74,154 - -0.1 74,206 + BACOVA_01876 0.13 -0.1 74,207 - BACOVA_01876 0.13 -0.1 74,218 + BACOVA_01876 0.14 +1.2 74,225 + BACOVA_01876 0.14 -0.9 74,226 - BACOVA_01876 0.15 -0.5 74,287 + BACOVA_01876 0.20 +0.2 74,305 + BACOVA_01876 0.22 +1.5 74,347 + BACOVA_01876 0.26 -1.6 74,348 - BACOVA_01876 0.26 -0.9 74,388 + BACOVA_01876 0.30 -0.8 74,389 - BACOVA_01876 0.30 +0.2 74,532 - BACOVA_01876 0.44 +0.3 74,532 - BACOVA_01876 0.44 -0.3 74,532 - BACOVA_01876 0.44 +0.1 74,536 + BACOVA_01876 0.45 +1.5 74,543 + BACOVA_01876 0.45 -0.7 74,543 + BACOVA_01876 0.45 -0.1 74,627 + BACOVA_01876 0.53 +0.9 74,650 - BACOVA_01876 0.56 -1.0 74,650 - BACOVA_01876 0.56 +0.0 74,692 + BACOVA_01876 0.60 -0.8 74,692 + BACOVA_01876 0.60 -0.7 74,733 - BACOVA_01876 0.64 +0.5 74,738 + BACOVA_01876 0.64 -1.0 74,739 - BACOVA_01876 0.64 -1.8 74,739 - BACOVA_01876 0.64 +0.2 74,739 - BACOVA_01876 0.64 +0.9 74,781 + BACOVA_01876 0.68 -1.5 74,781 + BACOVA_01876 0.68 -2.3 74,781 + BACOVA_01876 0.68 -1.3 74,782 - BACOVA_01876 0.68 -0.6 74,788 + BACOVA_01876 0.69 -1.3 74,808 - BACOVA_01876 0.71 +1.5 74,861 - BACOVA_01876 0.76 -1.3 74,965 - BACOVA_01876 0.86 -0.5 74,965 - BACOVA_01876 0.86 +0.0 74,983 + BACOVA_01876 0.88 -0.5 74,984 - BACOVA_01876 0.88 +0.5 74,984 - BACOVA_01876 0.88 -0.3 74,985 + BACOVA_01876 0.88 +1.5 74,986 - BACOVA_01876 0.88 -0.6 75,009 + -1.1 75,009 + -1.0 75,010 - -0.2 75,010 - -1.1 75,017 + +0.9 75,018 - +0.1 75,066 + -1.7 75,066 + -1.1 75,140 - +0.9 75,145 + -1.5 75,217 + BACOVA_01877 0.17 -0.1 75,246 + BACOVA_01877 0.22 +2.1 75,351 - BACOVA_01877 0.41 -1.5 75,351 - BACOVA_01877 0.41 -0.0 75,354 + BACOVA_01877 0.41 -0.6 75,355 - BACOVA_01877 0.41 -0.7 75,475 - BACOVA_01877 0.62 -0.8 75,582 + BACOVA_01877 0.81 -0.1 75,637 + -0.1 75,642 + +0.8 75,643 - +0.0 75,643 - -0.4 75,654 - -0.4 75,674 - +0.8 75,746 + +1.5 75,747 - +0.5 75,751 - +0.7 75,776 - -3.0 75,790 - -0.7 75,791 + -1.1 75,792 - +0.3 75,792 - -0.5 75,792 - -0.3 75,794 + -1.3 75,794 + -1.1 75,794 + -1.1 75,795 - +0.3 75,795 - -0.4 75,795 - -0.1 75,795 - +0.4 75,826 - -0.0 75,834 + -1.0 75,834 + -2.3 75,882 - +0.3 75,895 + -0.1 75,896 - -0.6 75,916 + -0.5 75,916 + -0.5 75,917 - +1.2 75,917 - -0.1 75,928 + -0.5 75,929 - +0.5 75,961 + -0.6 75,962 - -0.3 76,089 + BACOVA_01878 0.13 +0.0
Or see this region's nucleotide sequence