Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00863

Experiment: Tara gum 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00860 and BACOVA_00861 are separated by 150 nucleotidesBACOVA_00861 and BACOVA_00862 are separated by 126 nucleotidesBACOVA_00862 and BACOVA_00863 are separated by 44 nucleotidesBACOVA_00863 and BACOVA_00864 are separated by 207 nucleotides BACOVA_00860: BACOVA_00860 - transcriptional regulator, LacI family, at 114,851 to 115,924 _00860 BACOVA_00861: BACOVA_00861 - hypothetical protein, at 116,075 to 116,188 _00861 BACOVA_00862: BACOVA_00862 - hypothetical protein, at 116,315 to 116,602 _00862 BACOVA_00863: BACOVA_00863 - transglycosylase associated protein, at 116,647 to 116,892 _00863 BACOVA_00864: BACOVA_00864 - transporter, major facilitator family protein, at 117,100 to 118,305 _00864 Position (kb) 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 115.659 kb on - strand, within BACOVA_00860at 115.659 kb on - strand, within BACOVA_00860at 115.659 kb on - strand, within BACOVA_00860at 115.661 kb on - strand, within BACOVA_00860at 115.684 kb on - strand, within BACOVA_00860at 115.708 kb on + strand, within BACOVA_00860at 115.725 kb on + strand, within BACOVA_00860at 115.726 kb on - strand, within BACOVA_00860at 115.726 kb on - strand, within BACOVA_00860at 115.778 kb on + strand, within BACOVA_00860at 115.778 kb on + strand, within BACOVA_00860at 115.778 kb on + strand, within BACOVA_00860at 115.779 kb on - strand, within BACOVA_00860at 115.779 kb on - strand, within BACOVA_00860at 115.823 kb on + strandat 115.854 kb on - strandat 115.883 kb on - strandat 115.892 kb on + strandat 115.933 kb on - strandat 115.936 kb on + strandat 116.098 kb on + strand, within BACOVA_00861at 116.099 kb on - strand, within BACOVA_00861at 116.101 kb on + strand, within BACOVA_00861at 116.120 kb on - strand, within BACOVA_00861at 116.194 kb on + strandat 116.316 kb on + strandat 116.330 kb on - strandat 116.374 kb on + strand, within BACOVA_00862at 116.407 kb on + strand, within BACOVA_00862at 116.451 kb on - strand, within BACOVA_00862at 116.479 kb on + strand, within BACOVA_00862at 116.479 kb on + strand, within BACOVA_00862at 116.485 kb on + strand, within BACOVA_00862at 116.486 kb on - strand, within BACOVA_00862at 116.486 kb on - strand, within BACOVA_00862at 116.488 kb on - strand, within BACOVA_00862at 116.535 kb on + strand, within BACOVA_00862at 116.594 kb on - strandat 116.619 kb on + strandat 116.620 kb on - strandat 116.640 kb on + strandat 116.644 kb on + strandat 116.644 kb on + strandat 116.683 kb on + strand, within BACOVA_00863at 116.684 kb on - strand, within BACOVA_00863at 116.684 kb on - strand, within BACOVA_00863at 116.710 kb on + strand, within BACOVA_00863at 116.806 kb on - strand, within BACOVA_00863at 116.862 kb on + strand, within BACOVA_00863at 116.875 kb on - strandat 116.875 kb on - strandat 116.876 kb on + strandat 116.877 kb on - strandat 116.882 kb on - strandat 116.883 kb on + strandat 116.883 kb on + strandat 116.893 kb on - strandat 116.895 kb on - strandat 116.925 kb on + strandat 116.925 kb on + strandat 116.926 kb on - strandat 116.992 kb on + strandat 116.998 kb on + strandat 117.003 kb on + strandat 117.004 kb on - strandat 117.025 kb on - strandat 117.027 kb on - strandat 117.052 kb on - strandat 117.096 kb on + strandat 117.099 kb on + strandat 117.100 kb on - strandat 117.201 kb on - strandat 117.212 kb on - strandat 117.218 kb on + strandat 117.218 kb on + strandat 117.222 kb on + strand, within BACOVA_00864at 117.234 kb on - strand, within BACOVA_00864at 117.240 kb on + strand, within BACOVA_00864at 117.241 kb on - strand, within BACOVA_00864at 117.261 kb on + strand, within BACOVA_00864at 117.262 kb on - strand, within BACOVA_00864at 117.262 kb on - strand, within BACOVA_00864at 117.262 kb on - strand, within BACOVA_00864at 117.270 kb on - strand, within BACOVA_00864at 117.366 kb on + strand, within BACOVA_00864at 117.367 kb on - strand, within BACOVA_00864at 117.390 kb on - strand, within BACOVA_00864at 117.407 kb on + strand, within BACOVA_00864at 117.407 kb on + strand, within BACOVA_00864at 117.408 kb on - strand, within BACOVA_00864at 117.408 kb on - strand, within BACOVA_00864at 117.408 kb on - strand, within BACOVA_00864at 117.419 kb on + strand, within BACOVA_00864at 117.419 kb on + strand, within BACOVA_00864at 117.557 kb on + strand, within BACOVA_00864at 117.557 kb on + strand, within BACOVA_00864at 117.558 kb on - strand, within BACOVA_00864at 117.578 kb on + strand, within BACOVA_00864at 117.614 kb on + strand, within BACOVA_00864at 117.615 kb on - strand, within BACOVA_00864at 117.615 kb on - strand, within BACOVA_00864at 117.632 kb on + strand, within BACOVA_00864at 117.653 kb on - strand, within BACOVA_00864at 117.671 kb on - strand, within BACOVA_00864at 117.671 kb on - strand, within BACOVA_00864at 117.672 kb on + strand, within BACOVA_00864at 117.742 kb on - strand, within BACOVA_00864at 117.798 kb on + strand, within BACOVA_00864at 117.798 kb on + strand, within BACOVA_00864at 117.799 kb on - strand, within BACOVA_00864at 117.799 kb on - strand, within BACOVA_00864at 117.802 kb on + strand, within BACOVA_00864at 117.802 kb on + strand, within BACOVA_00864at 117.823 kb on + strand, within BACOVA_00864at 117.828 kb on + strand, within BACOVA_00864at 117.829 kb on - strand, within BACOVA_00864at 117.835 kb on + strand, within BACOVA_00864at 117.857 kb on + strand, within BACOVA_00864at 117.864 kb on - strand, within BACOVA_00864at 117.880 kb on + strand, within BACOVA_00864at 117.884 kb on + strand, within BACOVA_00864at 117.885 kb on - strand, within BACOVA_00864at 117.888 kb on + strand, within BACOVA_00864

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C)
remove
115,659 - BACOVA_00860 0.75 -0.2
115,659 - BACOVA_00860 0.75 -1.5
115,659 - BACOVA_00860 0.75 -0.3
115,661 - BACOVA_00860 0.75 +0.9
115,684 - BACOVA_00860 0.78 -1.4
115,708 + BACOVA_00860 0.80 +0.1
115,725 + BACOVA_00860 0.81 -0.9
115,726 - BACOVA_00860 0.81 +0.6
115,726 - BACOVA_00860 0.81 +1.3
115,778 + BACOVA_00860 0.86 +0.7
115,778 + BACOVA_00860 0.86 -0.0
115,778 + BACOVA_00860 0.86 -0.3
115,779 - BACOVA_00860 0.86 +0.3
115,779 - BACOVA_00860 0.86 -0.3
115,823 + +0.5
115,854 - +1.7
115,883 - +0.6
115,892 + -1.9
115,933 - -1.4
115,936 + -0.0
116,098 + BACOVA_00861 0.20 +0.6
116,099 - BACOVA_00861 0.21 +0.6
116,101 + BACOVA_00861 0.23 +0.1
116,120 - BACOVA_00861 0.39 +1.2
116,194 + -0.9
116,316 + +1.9
116,330 - -2.0
116,374 + BACOVA_00862 0.20 -0.4
116,407 + BACOVA_00862 0.32 -0.3
116,451 - BACOVA_00862 0.47 -0.2
116,479 + BACOVA_00862 0.57 +0.8
116,479 + BACOVA_00862 0.57 +0.2
116,485 + BACOVA_00862 0.59 -2.1
116,486 - BACOVA_00862 0.59 -0.8
116,486 - BACOVA_00862 0.59 +0.1
116,488 - BACOVA_00862 0.60 -1.4
116,535 + BACOVA_00862 0.76 -0.3
116,594 - +0.9
116,619 + -3.1
116,620 - +0.8
116,640 + -1.0
116,644 + -0.2
116,644 + +0.9
116,683 + BACOVA_00863 0.15 -0.0
116,684 - BACOVA_00863 0.15 -0.3
116,684 - BACOVA_00863 0.15 +0.1
116,710 + BACOVA_00863 0.26 -0.6
116,806 - BACOVA_00863 0.65 -0.2
116,862 + BACOVA_00863 0.87 -0.7
116,875 - -1.3
116,875 - -0.6
116,876 + -0.4
116,877 - +0.8
116,882 - +0.9
116,883 + +0.9
116,883 + +1.0
116,893 - -0.7
116,895 - +1.0
116,925 + -0.8
116,925 + +0.3
116,926 - +0.3
116,992 + +0.7
116,998 + -0.9
117,003 + +1.3
117,004 - +0.5
117,025 - -1.2
117,027 - +2.9
117,052 - +0.3
117,096 + +1.3
117,099 + +1.9
117,100 - +0.3
117,201 - -0.2
117,212 - +1.3
117,218 + +0.1
117,218 + +1.3
117,222 + BACOVA_00864 0.10 +0.1
117,234 - BACOVA_00864 0.11 -0.1
117,240 + BACOVA_00864 0.12 -1.1
117,241 - BACOVA_00864 0.12 -2.1
117,261 + BACOVA_00864 0.13 -0.8
117,262 - BACOVA_00864 0.13 +1.7
117,262 - BACOVA_00864 0.13 +0.5
117,262 - BACOVA_00864 0.13 +0.3
117,270 - BACOVA_00864 0.14 +1.1
117,366 + BACOVA_00864 0.22 -0.1
117,367 - BACOVA_00864 0.22 -2.7
117,390 - BACOVA_00864 0.24 -0.4
117,407 + BACOVA_00864 0.25 -0.9
117,407 + BACOVA_00864 0.25 +0.4
117,408 - BACOVA_00864 0.26 +0.3
117,408 - BACOVA_00864 0.26 +0.2
117,408 - BACOVA_00864 0.26 -0.5
117,419 + BACOVA_00864 0.26 +0.1
117,419 + BACOVA_00864 0.26 +1.3
117,557 + BACOVA_00864 0.38 +0.3
117,557 + BACOVA_00864 0.38 +1.6
117,558 - BACOVA_00864 0.38 -0.5
117,578 + BACOVA_00864 0.40 +0.5
117,614 + BACOVA_00864 0.43 +0.2
117,615 - BACOVA_00864 0.43 -1.3
117,615 - BACOVA_00864 0.43 -0.4
117,632 + BACOVA_00864 0.44 -0.4
117,653 - BACOVA_00864 0.46 -1.3
117,671 - BACOVA_00864 0.47 +0.9
117,671 - BACOVA_00864 0.47 +0.7
117,672 + BACOVA_00864 0.47 -0.0
117,742 - BACOVA_00864 0.53 +0.1
117,798 + BACOVA_00864 0.58 -1.3
117,798 + BACOVA_00864 0.58 +1.0
117,799 - BACOVA_00864 0.58 -0.4
117,799 - BACOVA_00864 0.58 +0.9
117,802 + BACOVA_00864 0.58 +1.1
117,802 + BACOVA_00864 0.58 +0.1
117,823 + BACOVA_00864 0.60 -0.1
117,828 + BACOVA_00864 0.60 +0.2
117,829 - BACOVA_00864 0.60 -0.8
117,835 + BACOVA_00864 0.61 -0.8
117,857 + BACOVA_00864 0.63 -0.0
117,864 - BACOVA_00864 0.63 -0.2
117,880 + BACOVA_00864 0.65 +1.0
117,884 + BACOVA_00864 0.65 +1.1
117,885 - BACOVA_00864 0.65 +1.3
117,888 + BACOVA_00864 0.65 -0.5

Or see this region's nucleotide sequence