Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00749

Experiment: Tara gum 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00747 and BACOVA_00748 are separated by 3 nucleotidesBACOVA_00748 and BACOVA_00749 overlap by 8 nucleotidesBACOVA_00749 and BACOVA_00750 are separated by 129 nucleotides BACOVA_00747: BACOVA_00747 - hypothetical protein, at 426,572 to 427,723 _00747 BACOVA_00748: BACOVA_00748 - ABC transporter, ATP-binding protein, at 427,727 to 428,470 _00748 BACOVA_00749: BACOVA_00749 - hypothetical protein, at 428,463 to 429,419 _00749 BACOVA_00750: BACOVA_00750 - histidine kinase A domain protein, at 429,549 to 430,823 _00750 Position (kb) 428 429 430Strain fitness (log2 ratio) -2 -1 0 1 2at 427.464 kb on + strand, within BACOVA_00747at 427.465 kb on - strand, within BACOVA_00747at 427.494 kb on + strand, within BACOVA_00747at 427.540 kb on + strand, within BACOVA_00747at 427.563 kb on - strand, within BACOVA_00747at 427.563 kb on - strand, within BACOVA_00747at 427.596 kb on + strand, within BACOVA_00747at 427.597 kb on - strand, within BACOVA_00747at 427.641 kb on + strandat 427.664 kb on - strandat 427.692 kb on - strandat 427.694 kb on + strandat 427.709 kb on + strandat 427.710 kb on - strandat 427.710 kb on - strandat 427.712 kb on - strandat 427.722 kb on - strandat 427.726 kb on + strandat 427.746 kb on + strandat 427.747 kb on - strandat 427.769 kb on + strandat 427.788 kb on + strandat 427.789 kb on - strandat 427.865 kb on - strand, within BACOVA_00748at 427.865 kb on - strand, within BACOVA_00748at 427.872 kb on + strand, within BACOVA_00748at 427.872 kb on + strand, within BACOVA_00748at 427.873 kb on - strand, within BACOVA_00748at 427.898 kb on - strand, within BACOVA_00748at 427.987 kb on - strand, within BACOVA_00748at 427.994 kb on + strand, within BACOVA_00748at 428.002 kb on + strand, within BACOVA_00748at 428.003 kb on - strand, within BACOVA_00748at 428.041 kb on - strand, within BACOVA_00748at 428.077 kb on + strand, within BACOVA_00748at 428.175 kb on + strand, within BACOVA_00748at 428.180 kb on - strand, within BACOVA_00748at 428.201 kb on - strand, within BACOVA_00748at 428.201 kb on - strand, within BACOVA_00748at 428.370 kb on + strand, within BACOVA_00748at 428.429 kb on + strandat 428.431 kb on + strandat 428.468 kb on + strandat 428.546 kb on - strandat 428.546 kb on - strandat 428.549 kb on - strandat 428.549 kb on - strandat 428.555 kb on + strandat 428.556 kb on - strandat 428.558 kb on - strandat 428.581 kb on + strand, within BACOVA_00749at 428.584 kb on - strand, within BACOVA_00749at 428.584 kb on - strand, within BACOVA_00749at 428.586 kb on - strand, within BACOVA_00749at 428.586 kb on - strand, within BACOVA_00749at 428.601 kb on - strand, within BACOVA_00749at 428.603 kb on + strand, within BACOVA_00749at 428.711 kb on - strand, within BACOVA_00749at 428.711 kb on - strand, within BACOVA_00749at 428.765 kb on + strand, within BACOVA_00749at 428.799 kb on - strand, within BACOVA_00749at 428.799 kb on - strand, within BACOVA_00749at 428.817 kb on - strand, within BACOVA_00749at 428.852 kb on - strand, within BACOVA_00749at 428.855 kb on + strand, within BACOVA_00749at 428.855 kb on + strand, within BACOVA_00749at 428.906 kb on + strand, within BACOVA_00749at 428.912 kb on + strand, within BACOVA_00749at 428.961 kb on - strand, within BACOVA_00749at 428.961 kb on - strand, within BACOVA_00749at 428.978 kb on - strand, within BACOVA_00749at 429.044 kb on - strand, within BACOVA_00749at 429.142 kb on - strand, within BACOVA_00749at 429.173 kb on - strand, within BACOVA_00749at 429.216 kb on - strand, within BACOVA_00749at 429.226 kb on + strand, within BACOVA_00749at 429.274 kb on + strand, within BACOVA_00749at 429.285 kb on - strand, within BACOVA_00749at 429.319 kb on + strand, within BACOVA_00749at 429.374 kb on + strandat 429.381 kb on + strandat 429.382 kb on - strandat 429.431 kb on + strandat 429.471 kb on + strandat 429.472 kb on - strandat 429.472 kb on - strandat 429.515 kb on - strandat 429.600 kb on + strandat 429.603 kb on - strandat 429.638 kb on + strandat 429.638 kb on + strandat 429.639 kb on - strandat 429.639 kb on - strandat 429.639 kb on - strandat 429.639 kb on - strandat 429.675 kb on - strandat 429.698 kb on + strand, within BACOVA_00750at 429.756 kb on - strand, within BACOVA_00750at 429.756 kb on - strand, within BACOVA_00750at 429.773 kb on + strand, within BACOVA_00750at 429.792 kb on - strand, within BACOVA_00750at 429.796 kb on - strand, within BACOVA_00750at 429.796 kb on - strand, within BACOVA_00750at 429.880 kb on - strand, within BACOVA_00750at 429.892 kb on - strand, within BACOVA_00750at 429.892 kb on - strand, within BACOVA_00750at 429.908 kb on - strand, within BACOVA_00750at 429.932 kb on - strand, within BACOVA_00750at 429.946 kb on - strand, within BACOVA_00750at 429.988 kb on - strand, within BACOVA_00750at 430.006 kb on - strand, within BACOVA_00750at 430.009 kb on - strand, within BACOVA_00750at 430.127 kb on + strand, within BACOVA_00750at 430.127 kb on + strand, within BACOVA_00750at 430.199 kb on + strand, within BACOVA_00750at 430.210 kb on + strand, within BACOVA_00750at 430.262 kb on + strand, within BACOVA_00750at 430.311 kb on + strand, within BACOVA_00750at 430.312 kb on - strand, within BACOVA_00750at 430.312 kb on - strand, within BACOVA_00750at 430.318 kb on - strand, within BACOVA_00750at 430.321 kb on + strand, within BACOVA_00750at 430.335 kb on - strand, within BACOVA_00750at 430.368 kb on - strand, within BACOVA_00750at 430.368 kb on - strand, within BACOVA_00750at 430.378 kb on - strand, within BACOVA_00750at 430.387 kb on - strand, within BACOVA_00750at 430.387 kb on - strand, within BACOVA_00750at 430.390 kb on + strand, within BACOVA_00750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C)
remove
427,464 + BACOVA_00747 0.77 +0.1
427,465 - BACOVA_00747 0.78 +1.9
427,494 + BACOVA_00747 0.80 -0.3
427,540 + BACOVA_00747 0.84 -0.7
427,563 - BACOVA_00747 0.86 -1.5
427,563 - BACOVA_00747 0.86 +0.3
427,596 + BACOVA_00747 0.89 +0.7
427,597 - BACOVA_00747 0.89 -0.0
427,641 + +0.6
427,664 - +0.8
427,692 - -0.7
427,694 + +0.6
427,709 + +0.6
427,710 - -2.2
427,710 - -1.3
427,712 - -1.0
427,722 - +0.2
427,726 + +0.7
427,746 + -0.0
427,747 - +0.7
427,769 + +0.3
427,788 + +2.3
427,789 - +0.6
427,865 - BACOVA_00748 0.19 -0.5
427,865 - BACOVA_00748 0.19 -1.0
427,872 + BACOVA_00748 0.19 -1.0
427,872 + BACOVA_00748 0.19 -0.0
427,873 - BACOVA_00748 0.20 -0.6
427,898 - BACOVA_00748 0.23 -0.9
427,987 - BACOVA_00748 0.35 +0.0
427,994 + BACOVA_00748 0.36 -0.2
428,002 + BACOVA_00748 0.37 +0.3
428,003 - BACOVA_00748 0.37 +0.7
428,041 - BACOVA_00748 0.42 -0.3
428,077 + BACOVA_00748 0.47 -0.9
428,175 + BACOVA_00748 0.60 -1.2
428,180 - BACOVA_00748 0.61 +0.0
428,201 - BACOVA_00748 0.64 +1.1
428,201 - BACOVA_00748 0.64 -0.0
428,370 + BACOVA_00748 0.86 +0.7
428,429 + -0.9
428,431 + -2.3
428,468 + -1.7
428,546 - +0.3
428,546 - -1.0
428,549 - +0.9
428,549 - -1.3
428,555 + +0.6
428,556 - -0.5
428,558 - +0.9
428,581 + BACOVA_00749 0.12 -0.3
428,584 - BACOVA_00749 0.13 -0.7
428,584 - BACOVA_00749 0.13 -0.1
428,586 - BACOVA_00749 0.13 -0.0
428,586 - BACOVA_00749 0.13 -1.3
428,601 - BACOVA_00749 0.14 -0.3
428,603 + BACOVA_00749 0.15 -0.8
428,711 - BACOVA_00749 0.26 -0.0
428,711 - BACOVA_00749 0.26 -0.2
428,765 + BACOVA_00749 0.32 -0.1
428,799 - BACOVA_00749 0.35 -1.8
428,799 - BACOVA_00749 0.35 -0.3
428,817 - BACOVA_00749 0.37 -0.7
428,852 - BACOVA_00749 0.41 +0.7
428,855 + BACOVA_00749 0.41 -0.6
428,855 + BACOVA_00749 0.41 -1.0
428,906 + BACOVA_00749 0.46 +0.3
428,912 + BACOVA_00749 0.47 +0.4
428,961 - BACOVA_00749 0.52 -1.3
428,961 - BACOVA_00749 0.52 +0.6
428,978 - BACOVA_00749 0.54 +1.1
429,044 - BACOVA_00749 0.61 -0.0
429,142 - BACOVA_00749 0.71 +1.3
429,173 - BACOVA_00749 0.74 -0.3
429,216 - BACOVA_00749 0.79 -0.2
429,226 + BACOVA_00749 0.80 +1.3
429,274 + BACOVA_00749 0.85 -0.5
429,285 - BACOVA_00749 0.86 +0.8
429,319 + BACOVA_00749 0.89 -0.8
429,374 + -0.3
429,381 + +0.6
429,382 - -0.8
429,431 + +1.1
429,471 + -0.7
429,472 - -0.0
429,472 - +0.7
429,515 - -0.4
429,600 + -1.1
429,603 - +0.7
429,638 + +1.8
429,638 + +0.3
429,639 - +1.5
429,639 - +0.8
429,639 - -0.1
429,639 - -0.1
429,675 - +2.5
429,698 + BACOVA_00750 0.12 +2.3
429,756 - BACOVA_00750 0.16 +0.5
429,756 - BACOVA_00750 0.16 +0.7
429,773 + BACOVA_00750 0.18 -0.2
429,792 - BACOVA_00750 0.19 +1.0
429,796 - BACOVA_00750 0.19 -0.3
429,796 - BACOVA_00750 0.19 +0.8
429,880 - BACOVA_00750 0.26 +0.3
429,892 - BACOVA_00750 0.27 +0.9
429,892 - BACOVA_00750 0.27 +1.6
429,908 - BACOVA_00750 0.28 -1.5
429,932 - BACOVA_00750 0.30 -1.0
429,946 - BACOVA_00750 0.31 +0.9
429,988 - BACOVA_00750 0.34 +1.0
430,006 - BACOVA_00750 0.36 -0.8
430,009 - BACOVA_00750 0.36 +0.5
430,127 + BACOVA_00750 0.45 +0.5
430,127 + BACOVA_00750 0.45 +0.3
430,199 + BACOVA_00750 0.51 +0.3
430,210 + BACOVA_00750 0.52 +0.2
430,262 + BACOVA_00750 0.56 +0.7
430,311 + BACOVA_00750 0.60 +1.3
430,312 - BACOVA_00750 0.60 +1.4
430,312 - BACOVA_00750 0.60 +1.1
430,318 - BACOVA_00750 0.60 +0.3
430,321 + BACOVA_00750 0.61 +1.0
430,335 - BACOVA_00750 0.62 +1.3
430,368 - BACOVA_00750 0.64 +1.0
430,368 - BACOVA_00750 0.64 +1.1
430,378 - BACOVA_00750 0.65 -1.2
430,387 - BACOVA_00750 0.66 +0.2
430,387 - BACOVA_00750 0.66 +0.3
430,390 + BACOVA_00750 0.66 +0.1

Or see this region's nucleotide sequence