Experiment: Tara gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00580 and BACOVA_00581 are separated by 137 nucleotides BACOVA_00581 and BACOVA_00582 are separated by 126 nucleotides BACOVA_00582 and BACOVA_00583 are separated by 4 nucleotides BACOVA_00583 and BACOVA_00584 overlap by 17 nucleotides
BACOVA_00580: BACOVA_00580 - hypothetical protein, at 14,697 to 15,056
_00580
BACOVA_00581: BACOVA_00581 - hypothetical protein, at 15,194 to 15,700
_00581
BACOVA_00582: BACOVA_00582 - hypothetical protein, at 15,827 to 18,085
_00582
BACOVA_00583: BACOVA_00583 - RNA polymerase sigma factor, sigma-70 family, at 18,090 to 18,662
_00583
BACOVA_00584: BACOVA_00584 - RyR domain protein, at 18,646 to 19,734
_00584
Position (kb) 15
16
17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 14.893 kb on - strand, within BACOVA_00580 at 14.919 kb on - strand, within BACOVA_00580 at 14.945 kb on - strand, within BACOVA_00580 at 14.945 kb on - strand, within BACOVA_00580 at 14.975 kb on + strand, within BACOVA_00580 at 15.026 kb on - strand at 15.032 kb on - strand at 15.242 kb on + strand at 15.269 kb on - strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.271 kb on - strand, within BACOVA_00581 at 15.300 kb on + strand, within BACOVA_00581 at 15.301 kb on - strand, within BACOVA_00581 at 15.301 kb on - strand, within BACOVA_00581 at 15.304 kb on + strand, within BACOVA_00581 at 15.473 kb on - strand, within BACOVA_00581 at 15.473 kb on - strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.498 kb on - strand, within BACOVA_00581 at 15.498 kb on - strand, within BACOVA_00581 at 15.517 kb on + strand, within BACOVA_00581 at 15.522 kb on + strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.530 kb on - strand, within BACOVA_00581 at 15.588 kb on + strand, within BACOVA_00581 at 15.588 kb on + strand, within BACOVA_00581 at 15.699 kb on - strand at 15.763 kb on - strand at 15.766 kb on - strand at 15.778 kb on - strand at 15.806 kb on + strand at 15.826 kb on + strand at 15.826 kb on + strand at 15.826 kb on + strand at 15.827 kb on - strand at 15.830 kb on + strand at 15.830 kb on + strand at 15.831 kb on - strand at 15.832 kb on + strand at 15.833 kb on - strand at 15.833 kb on - strand at 15.837 kb on + strand at 15.846 kb on + strand at 15.847 kb on - strand at 15.952 kb on - strand at 15.952 kb on - strand at 15.954 kb on + strand at 15.956 kb on + strand at 16.012 kb on + strand at 16.017 kb on + strand at 16.018 kb on - strand at 16.022 kb on - strand at 16.040 kb on + strand at 16.040 kb on + strand at 16.040 kb on + strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.054 kb on + strand, within BACOVA_00582 at 16.055 kb on - strand, within BACOVA_00582 at 16.055 kb on - strand, within BACOVA_00582 at 16.096 kb on + strand, within BACOVA_00582 at 16.097 kb on - strand, within BACOVA_00582 at 16.114 kb on + strand, within BACOVA_00582 at 16.114 kb on + strand, within BACOVA_00582 at 16.177 kb on + strand, within BACOVA_00582 at 16.191 kb on + strand, within BACOVA_00582 at 16.192 kb on - strand, within BACOVA_00582 at 16.325 kb on - strand, within BACOVA_00582 at 16.426 kb on + strand, within BACOVA_00582 at 16.542 kb on + strand, within BACOVA_00582 at 16.543 kb on - strand, within BACOVA_00582 at 16.604 kb on - strand, within BACOVA_00582 at 16.604 kb on - strand, within BACOVA_00582 at 16.626 kb on + strand, within BACOVA_00582 at 16.626 kb on + strand, within BACOVA_00582 at 16.628 kb on + strand, within BACOVA_00582 at 16.691 kb on + strand, within BACOVA_00582 at 16.769 kb on - strand, within BACOVA_00582 at 16.836 kb on + strand, within BACOVA_00582 at 16.945 kb on + strand, within BACOVA_00582 at 17.055 kb on + strand, within BACOVA_00582 at 17.065 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.102 kb on - strand, within BACOVA_00582 at 17.103 kb on + strand, within BACOVA_00582 at 17.104 kb on - strand, within BACOVA_00582 at 17.104 kb on - strand, within BACOVA_00582 at 17.231 kb on + strand, within BACOVA_00582 at 17.238 kb on + strand, within BACOVA_00582 at 17.239 kb on - strand, within BACOVA_00582 at 17.244 kb on - strand, within BACOVA_00582 at 17.251 kb on - strand, within BACOVA_00582 at 17.251 kb on - strand, within BACOVA_00582 at 17.258 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.312 kb on + strand, within BACOVA_00582 at 17.352 kb on - strand, within BACOVA_00582 at 17.397 kb on + strand, within BACOVA_00582 at 17.398 kb on - strand, within BACOVA_00582 at 17.413 kb on + strand, within BACOVA_00582 at 17.413 kb on + strand, within BACOVA_00582 at 17.418 kb on - strand, within BACOVA_00582 at 17.436 kb on + strand, within BACOVA_00582 at 17.437 kb on - strand, within BACOVA_00582 at 17.437 kb on - strand, within BACOVA_00582 at 17.475 kb on - strand, within BACOVA_00582 at 17.506 kb on - strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.526 kb on - strand, within BACOVA_00582 at 17.526 kb on - strand, within BACOVA_00582 at 17.668 kb on + strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.719 kb on + strand, within BACOVA_00582 at 17.724 kb on + strand, within BACOVA_00582 at 17.783 kb on - strand, within BACOVA_00582 at 17.786 kb on - strand, within BACOVA_00582 at 17.844 kb on - strand, within BACOVA_00582 at 17.848 kb on + strand, within BACOVA_00582 at 17.849 kb on - strand, within BACOVA_00582 at 17.873 kb on - strand at 17.877 kb on + strand at 17.877 kb on + strand at 17.885 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.943 kb on + strand at 17.984 kb on - strand at 18.017 kb on - strand at 18.083 kb on + strand at 18.087 kb on + strand at 18.087 kb on + strand at 18.088 kb on - strand at 18.090 kb on - strand at 18.107 kb on - strand at 18.107 kb on - strand at 18.160 kb on + strand, within BACOVA_00583 at 18.179 kb on + strand, within BACOVA_00583 at 18.199 kb on + strand, within BACOVA_00583 at 18.219 kb on + strand, within BACOVA_00583 at 18.243 kb on + strand, within BACOVA_00583 at 18.244 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.397 kb on - strand, within BACOVA_00583 at 18.488 kb on + strand, within BACOVA_00583 at 18.517 kb on + strand, within BACOVA_00583 at 18.553 kb on + strand, within BACOVA_00583 at 18.554 kb on - strand, within BACOVA_00583 at 18.557 kb on + strand, within BACOVA_00583 at 18.575 kb on + strand, within BACOVA_00583 at 18.576 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.622 kb on + strand at 18.623 kb on - strand at 18.626 kb on + strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.705 kb on + strand at 18.705 kb on + strand at 18.734 kb on + strand at 18.743 kb on - strand at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.912 kb on + strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.996 kb on + strand, within BACOVA_00584 at 19.001 kb on + strand, within BACOVA_00584 at 19.002 kb on - strand, within BACOVA_00584 at 19.057 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C) remove 14,893 - BACOVA_00580 0.54 -0.3 14,919 - BACOVA_00580 0.62 +0.4 14,945 - BACOVA_00580 0.69 +0.2 14,945 - BACOVA_00580 0.69 +1.3 14,975 + BACOVA_00580 0.77 -0.9 15,026 - -0.3 15,032 - -1.0 15,242 + +2.6 15,269 - BACOVA_00581 0.15 +0.7 15,270 + BACOVA_00581 0.15 +1.3 15,270 + BACOVA_00581 0.15 -1.3 15,270 + BACOVA_00581 0.15 -0.7 15,271 - BACOVA_00581 0.15 -0.5 15,300 + BACOVA_00581 0.21 +0.0 15,301 - BACOVA_00581 0.21 -2.3 15,301 - BACOVA_00581 0.21 +0.8 15,304 + BACOVA_00581 0.22 -0.3 15,473 - BACOVA_00581 0.55 +0.3 15,473 - BACOVA_00581 0.55 +0.3 15,497 + BACOVA_00581 0.60 -0.6 15,497 + BACOVA_00581 0.60 -0.2 15,497 + BACOVA_00581 0.60 +1.6 15,497 + BACOVA_00581 0.60 -0.8 15,498 - BACOVA_00581 0.60 +0.9 15,498 - BACOVA_00581 0.60 -0.1 15,517 + BACOVA_00581 0.64 +0.7 15,522 + BACOVA_00581 0.65 -0.9 15,523 - BACOVA_00581 0.65 -2.4 15,523 - BACOVA_00581 0.65 +0.6 15,523 - BACOVA_00581 0.65 +0.2 15,530 - BACOVA_00581 0.66 +0.5 15,588 + BACOVA_00581 0.78 -1.7 15,588 + BACOVA_00581 0.78 -0.2 15,699 - -0.2 15,763 - +0.3 15,766 - -0.6 15,778 - -0.8 15,806 + +0.3 15,826 + -1.1 15,826 + -0.7 15,826 + -2.1 15,827 - +0.3 15,830 + +0.1 15,830 + +0.3 15,831 - +0.1 15,832 + -0.3 15,833 - +0.0 15,833 - +0.3 15,837 + -1.0 15,846 + +0.8 15,847 - -0.5 15,952 - +1.3 15,952 - +0.4 15,954 + +2.3 15,956 + -1.3 16,012 + -0.5 16,017 + -1.9 16,018 - -2.0 16,022 - +0.1 16,040 + -0.8 16,040 + -1.2 16,040 + +0.3 16,041 - +1.5 16,041 - +1.6 16,041 - +1.3 16,041 - -0.5 16,054 + BACOVA_00582 0.10 +1.3 16,055 - BACOVA_00582 0.10 -0.3 16,055 - BACOVA_00582 0.10 +0.0 16,096 + BACOVA_00582 0.12 -0.6 16,097 - BACOVA_00582 0.12 -0.4 16,114 + BACOVA_00582 0.13 +0.0 16,114 + BACOVA_00582 0.13 -0.3 16,177 + BACOVA_00582 0.15 +0.0 16,191 + BACOVA_00582 0.16 +0.3 16,192 - BACOVA_00582 0.16 -1.9 16,325 - BACOVA_00582 0.22 -0.3 16,426 + BACOVA_00582 0.27 -0.6 16,542 + BACOVA_00582 0.32 -0.9 16,543 - BACOVA_00582 0.32 -1.0 16,604 - BACOVA_00582 0.34 -0.6 16,604 - BACOVA_00582 0.34 +0.1 16,626 + BACOVA_00582 0.35 +0.0 16,626 + BACOVA_00582 0.35 -0.3 16,628 + BACOVA_00582 0.35 +0.6 16,691 + BACOVA_00582 0.38 +0.5 16,769 - BACOVA_00582 0.42 +0.6 16,836 + BACOVA_00582 0.45 +0.1 16,945 + BACOVA_00582 0.49 +0.6 17,055 + BACOVA_00582 0.54 +0.7 17,065 + BACOVA_00582 0.55 +0.2 17,101 + BACOVA_00582 0.56 +1.3 17,101 + BACOVA_00582 0.56 +0.9 17,101 + BACOVA_00582 0.56 +0.5 17,101 + BACOVA_00582 0.56 +1.4 17,101 + BACOVA_00582 0.56 +1.6 17,102 - BACOVA_00582 0.56 +0.5 17,103 + BACOVA_00582 0.56 +0.6 17,104 - BACOVA_00582 0.57 +0.1 17,104 - BACOVA_00582 0.57 +0.3 17,231 + BACOVA_00582 0.62 -0.9 17,238 + BACOVA_00582 0.62 +0.6 17,239 - BACOVA_00582 0.63 -2.3 17,244 - BACOVA_00582 0.63 +1.0 17,251 - BACOVA_00582 0.63 +0.7 17,251 - BACOVA_00582 0.63 +1.3 17,258 - BACOVA_00582 0.63 +0.2 17,307 - BACOVA_00582 0.66 -1.3 17,307 - BACOVA_00582 0.66 -0.7 17,307 - BACOVA_00582 0.66 +2.3 17,312 + BACOVA_00582 0.66 +0.8 17,352 - BACOVA_00582 0.68 +1.4 17,397 + BACOVA_00582 0.69 +0.2 17,398 - BACOVA_00582 0.70 +0.5 17,413 + BACOVA_00582 0.70 +0.4 17,413 + BACOVA_00582 0.70 +0.5 17,418 - BACOVA_00582 0.70 +0.2 17,436 + BACOVA_00582 0.71 -0.3 17,437 - BACOVA_00582 0.71 +0.1 17,437 - BACOVA_00582 0.71 -0.6 17,475 - BACOVA_00582 0.73 -1.0 17,506 - BACOVA_00582 0.74 -1.3 17,525 + BACOVA_00582 0.75 +0.2 17,525 + BACOVA_00582 0.75 +0.9 17,525 + BACOVA_00582 0.75 +3.9 17,526 - BACOVA_00582 0.75 -0.3 17,526 - BACOVA_00582 0.75 +0.2 17,668 + BACOVA_00582 0.81 +0.3 17,669 - BACOVA_00582 0.82 -0.2 17,669 - BACOVA_00582 0.82 +0.2 17,669 - BACOVA_00582 0.82 -0.1 17,669 - BACOVA_00582 0.82 +0.1 17,719 + BACOVA_00582 0.84 -0.6 17,724 + BACOVA_00582 0.84 -0.1 17,783 - BACOVA_00582 0.87 +0.5 17,786 - BACOVA_00582 0.87 -0.7 17,844 - BACOVA_00582 0.89 -1.9 17,848 + BACOVA_00582 0.89 -1.5 17,849 - BACOVA_00582 0.90 +0.3 17,873 - -1.7 17,877 + -0.0 17,877 + -1.0 17,885 + +0.1 17,923 + +0.9 17,923 + -0.9 17,923 + -0.7 17,923 + -0.7 17,943 + +0.6 17,984 - +0.3 18,017 - +1.3 18,083 + +0.3 18,087 + -0.3 18,087 + +0.2 18,088 - -1.0 18,090 - +0.1 18,107 - -0.5 18,107 - -0.2 18,160 + BACOVA_00583 0.12 -0.6 18,179 + BACOVA_00583 0.16 -0.1 18,199 + BACOVA_00583 0.19 -0.5 18,219 + BACOVA_00583 0.23 -0.6 18,243 + BACOVA_00583 0.27 -0.6 18,244 - BACOVA_00583 0.27 +0.4 18,297 - BACOVA_00583 0.36 +0.9 18,297 - BACOVA_00583 0.36 +0.4 18,297 - BACOVA_00583 0.36 +0.6 18,397 - BACOVA_00583 0.54 +0.4 18,488 + BACOVA_00583 0.69 +1.1 18,517 + BACOVA_00583 0.75 -1.7 18,553 + BACOVA_00583 0.81 +0.5 18,554 - BACOVA_00583 0.81 -0.1 18,557 + BACOVA_00583 0.82 +0.1 18,575 + BACOVA_00583 0.85 +1.7 18,576 - BACOVA_00583 0.85 -1.0 18,588 - BACOVA_00583 0.87 -0.5 18,588 - BACOVA_00583 0.87 +0.2 18,622 + -1.7 18,623 - -1.4 18,626 + +1.3 18,667 - -2.4 18,667 - -0.0 18,667 - +0.1 18,705 + -0.7 18,705 + +1.3 18,734 + -1.7 18,743 - -0.8 18,870 + BACOVA_00584 0.21 -0.1 18,870 + BACOVA_00584 0.21 +0.9 18,870 + BACOVA_00584 0.21 +0.7 18,912 + BACOVA_00584 0.24 -1.7 18,928 - BACOVA_00584 0.26 +0.0 18,928 - BACOVA_00584 0.26 +0.9 18,996 + BACOVA_00584 0.32 -0.1 19,001 + BACOVA_00584 0.33 -0.3 19,002 - BACOVA_00584 0.33 -0.3 19,057 - BACOVA_00584 0.38 -1.2 19,071 - BACOVA_00584 0.39 +0.5 19,071 - BACOVA_00584 0.39 -0.9
Or see this region's nucleotide sequence