Experiment: Tara gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00337 and BACOVA_00338 are separated by 86 nucleotides BACOVA_00338 and BACOVA_00339 are separated by 97 nucleotides
BACOVA_00337: BACOVA_00337 - ATP-dependent DNA helicase RecQ, at 16,167 to 18,416
_00337
BACOVA_00338: BACOVA_00338 - inosine-5'-monophosphate dehydrogenase, at 18,503 to 19,981
_00338
BACOVA_00339: BACOVA_00339 - hypothetical protein, at 20,079 to 21,629
_00339
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.415 kb on - strand at 18.466 kb on + strand at 18.997 kb on + strand, within BACOVA_00338 at 19.000 kb on + strand, within BACOVA_00338 at 19.186 kb on - strand, within BACOVA_00338 at 19.307 kb on + strand, within BACOVA_00338 at 19.945 kb on + strand at 19.964 kb on + strand at 19.964 kb on + strand at 19.964 kb on + strand at 19.965 kb on - strand at 19.965 kb on - strand at 19.965 kb on - strand at 19.965 kb on - strand at 19.979 kb on + strand at 19.983 kb on - strand at 19.983 kb on - strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.987 kb on - strand at 19.987 kb on - strand at 19.987 kb on - strand at 19.987 kb on - strand at 19.987 kb on - strand at 19.987 kb on - strand at 20.000 kb on + strand at 20.029 kb on + strand at 20.111 kb on + strand at 20.111 kb on + strand at 20.126 kb on - strand at 20.182 kb on + strand at 20.202 kb on + strand at 20.256 kb on + strand, within BACOVA_00339 at 20.319 kb on - strand, within BACOVA_00339 at 20.319 kb on - strand, within BACOVA_00339 at 20.384 kb on - strand, within BACOVA_00339 at 20.402 kb on + strand, within BACOVA_00339 at 20.402 kb on + strand, within BACOVA_00339 at 20.418 kb on - strand, within BACOVA_00339 at 20.418 kb on - strand, within BACOVA_00339 at 20.540 kb on + strand, within BACOVA_00339 at 20.541 kb on - strand, within BACOVA_00339 at 20.541 kb on - strand, within BACOVA_00339 at 20.610 kb on - strand, within BACOVA_00339 at 20.619 kb on - strand, within BACOVA_00339 at 20.663 kb on - strand, within BACOVA_00339 at 20.684 kb on + strand, within BACOVA_00339 at 20.724 kb on - strand, within BACOVA_00339 at 20.823 kb on - strand, within BACOVA_00339 at 20.862 kb on + strand, within BACOVA_00339 at 20.863 kb on - strand, within BACOVA_00339 at 20.927 kb on + strand, within BACOVA_00339 at 20.946 kb on + strand, within BACOVA_00339 at 20.946 kb on + strand, within BACOVA_00339 at 20.947 kb on - strand, within BACOVA_00339 at 20.947 kb on - strand, within BACOVA_00339 at 20.957 kb on + strand, within BACOVA_00339 at 20.958 kb on - strand, within BACOVA_00339
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C) remove 18,415 - -0.6 18,466 + -0.6 18,997 + BACOVA_00338 0.33 +1.4 19,000 + BACOVA_00338 0.34 +1.4 19,186 - BACOVA_00338 0.46 -0.2 19,307 + BACOVA_00338 0.54 -0.2 19,945 + -1.4 19,964 + -0.5 19,964 + -2.2 19,964 + -0.9 19,965 - -0.1 19,965 - -0.0 19,965 - -0.2 19,965 - -1.6 19,979 + +0.3 19,983 - -0.1 19,983 - -0.7 19,986 + -0.2 19,986 + -0.3 19,987 - +0.7 19,987 - -0.4 19,987 - -0.9 19,987 - +0.6 19,987 - -0.3 19,987 - +0.4 20,000 + -1.8 20,029 + -0.1 20,111 + -0.1 20,111 + -1.1 20,126 - -0.6 20,182 + +1.7 20,202 + -0.5 20,256 + BACOVA_00339 0.11 +0.4 20,319 - BACOVA_00339 0.15 -1.2 20,319 - BACOVA_00339 0.15 +0.0 20,384 - BACOVA_00339 0.20 -0.8 20,402 + BACOVA_00339 0.21 +0.1 20,402 + BACOVA_00339 0.21 -0.2 20,418 - BACOVA_00339 0.22 +0.2 20,418 - BACOVA_00339 0.22 -0.2 20,540 + BACOVA_00339 0.30 +0.4 20,541 - BACOVA_00339 0.30 -0.2 20,541 - BACOVA_00339 0.30 +0.5 20,610 - BACOVA_00339 0.34 -1.4 20,619 - BACOVA_00339 0.35 -0.5 20,663 - BACOVA_00339 0.38 -0.2 20,684 + BACOVA_00339 0.39 -1.8 20,724 - BACOVA_00339 0.42 -0.4 20,823 - BACOVA_00339 0.48 -0.7 20,862 + BACOVA_00339 0.50 +0.1 20,863 - BACOVA_00339 0.51 -0.7 20,927 + BACOVA_00339 0.55 +0.1 20,946 + BACOVA_00339 0.56 +1.8 20,946 + BACOVA_00339 0.56 +1.0 20,947 - BACOVA_00339 0.56 +0.1 20,947 - BACOVA_00339 0.56 -0.5 20,957 + BACOVA_00339 0.57 -2.6 20,958 - BACOVA_00339 0.57 +0.2
Or see this region's nucleotide sequence