Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05474 and BACOVA_05475 are separated by 180 nucleotides BACOVA_05475 and BACOVA_05476 overlap by 17 nucleotides
BACOVA_05474: BACOVA_05474 - glycosyl hydrolase, family 88, at 967,081 to 968,385
_05474
BACOVA_05475: BACOVA_05475 - SusD family protein, at 968,566 to 970,272
_05475
BACOVA_05476: BACOVA_05476 - TonB-linked outer membrane protein, SusC/RagA family, at 970,256 to 973,429
_05476
Position (kb) 968
969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 967.628 kb on + strand, within BACOVA_05474 at 967.628 kb on + strand, within BACOVA_05474 at 967.629 kb on - strand, within BACOVA_05474 at 967.629 kb on - strand, within BACOVA_05474 at 967.633 kb on + strand, within BACOVA_05474 at 967.650 kb on + strand, within BACOVA_05474 at 967.650 kb on + strand, within BACOVA_05474 at 967.652 kb on + strand, within BACOVA_05474 at 967.686 kb on + strand, within BACOVA_05474 at 967.716 kb on + strand, within BACOVA_05474 at 967.739 kb on - strand, within BACOVA_05474 at 967.768 kb on - strand, within BACOVA_05474 at 967.919 kb on + strand, within BACOVA_05474 at 967.954 kb on - strand, within BACOVA_05474 at 967.961 kb on + strand, within BACOVA_05474 at 967.962 kb on - strand, within BACOVA_05474 at 967.964 kb on + strand, within BACOVA_05474 at 967.965 kb on - strand, within BACOVA_05474 at 967.965 kb on - strand, within BACOVA_05474 at 967.990 kb on - strand, within BACOVA_05474 at 968.016 kb on + strand, within BACOVA_05474 at 968.017 kb on - strand, within BACOVA_05474 at 968.037 kb on - strand, within BACOVA_05474 at 968.042 kb on + strand, within BACOVA_05474 at 968.048 kb on - strand, within BACOVA_05474 at 968.108 kb on - strand, within BACOVA_05474 at 968.108 kb on - strand, within BACOVA_05474 at 968.121 kb on + strand, within BACOVA_05474 at 968.152 kb on + strand, within BACOVA_05474 at 968.153 kb on - strand, within BACOVA_05474 at 968.202 kb on + strand, within BACOVA_05474 at 968.257 kb on + strand at 968.257 kb on + strand at 968.273 kb on - strand at 968.273 kb on - strand at 968.343 kb on + strand at 968.344 kb on - strand at 968.388 kb on + strand at 968.389 kb on - strand at 968.633 kb on - strand at 968.643 kb on + strand at 968.655 kb on + strand at 968.656 kb on - strand at 968.664 kb on - strand at 968.672 kb on + strand at 968.672 kb on + strand at 968.676 kb on + strand at 968.677 kb on - strand at 968.677 kb on - strand at 968.741 kb on + strand, within BACOVA_05475 at 968.741 kb on + strand, within BACOVA_05475 at 968.742 kb on - strand, within BACOVA_05475 at 968.744 kb on - strand, within BACOVA_05475 at 968.744 kb on - strand, within BACOVA_05475 at 968.795 kb on + strand, within BACOVA_05475 at 968.871 kb on + strand, within BACOVA_05475 at 968.871 kb on + strand, within BACOVA_05475 at 968.872 kb on - strand, within BACOVA_05475 at 968.901 kb on + strand, within BACOVA_05475 at 968.915 kb on + strand, within BACOVA_05475 at 968.928 kb on + strand, within BACOVA_05475 at 968.964 kb on - strand, within BACOVA_05475 at 968.969 kb on - strand, within BACOVA_05475 at 968.989 kb on + strand, within BACOVA_05475 at 968.990 kb on - strand, within BACOVA_05475 at 968.990 kb on - strand, within BACOVA_05475 at 969.048 kb on - strand, within BACOVA_05475 at 969.167 kb on - strand, within BACOVA_05475 at 969.186 kb on + strand, within BACOVA_05475 at 969.187 kb on - strand, within BACOVA_05475 at 969.215 kb on - strand, within BACOVA_05475 at 969.252 kb on + strand, within BACOVA_05475 at 969.382 kb on + strand, within BACOVA_05475 at 969.421 kb on - strand, within BACOVA_05475 at 969.487 kb on - strand, within BACOVA_05475 at 969.487 kb on - strand, within BACOVA_05475 at 969.574 kb on + strand, within BACOVA_05475 at 969.644 kb on - strand, within BACOVA_05475 at 969.648 kb on + strand, within BACOVA_05475 at 969.651 kb on + strand, within BACOVA_05475 at 969.657 kb on - strand, within BACOVA_05475 at 969.759 kb on + strand, within BACOVA_05475 at 969.760 kb on - strand, within BACOVA_05475 at 969.760 kb on - strand, within BACOVA_05475 at 969.767 kb on + strand, within BACOVA_05475 at 969.779 kb on - strand, within BACOVA_05475 at 969.802 kb on + strand, within BACOVA_05475 at 969.802 kb on + strand, within BACOVA_05475 at 969.803 kb on - strand, within BACOVA_05475 at 969.820 kb on + strand, within BACOVA_05475 at 969.821 kb on - strand, within BACOVA_05475 at 969.822 kb on + strand, within BACOVA_05475 at 969.822 kb on + strand, within BACOVA_05475 at 969.824 kb on + strand, within BACOVA_05475 at 969.826 kb on + strand, within BACOVA_05475 at 969.857 kb on + strand, within BACOVA_05475 at 969.858 kb on - strand, within BACOVA_05475 at 969.887 kb on - strand, within BACOVA_05475 at 969.906 kb on - strand, within BACOVA_05475 at 969.906 kb on - strand, within BACOVA_05475 at 969.917 kb on + strand, within BACOVA_05475 at 969.977 kb on - strand, within BACOVA_05475 at 969.981 kb on + strand, within BACOVA_05475 at 969.981 kb on + strand, within BACOVA_05475 at 969.986 kb on + strand, within BACOVA_05475 at 969.996 kb on + strand, within BACOVA_05475 at 970.021 kb on - strand, within BACOVA_05475 at 970.036 kb on - strand, within BACOVA_05475 at 970.044 kb on + strand, within BACOVA_05475 at 970.049 kb on - strand, within BACOVA_05475 at 970.061 kb on + strand, within BACOVA_05475 at 970.185 kb on + strand at 970.193 kb on - strand at 970.193 kb on - strand at 970.204 kb on + strand at 970.205 kb on - strand at 970.211 kb on - strand at 970.217 kb on - strand at 970.217 kb on - strand at 970.219 kb on - strand at 970.220 kb on + strand at 970.220 kb on + strand at 970.220 kb on + strand at 970.220 kb on + strand at 970.221 kb on - strand at 970.221 kb on - strand at 970.223 kb on + strand at 970.223 kb on + strand at 970.223 kb on + strand at 970.224 kb on - strand at 970.225 kb on + strand at 970.225 kb on + strand at 970.268 kb on - strand at 970.292 kb on - strand at 970.292 kb on - strand at 970.348 kb on + strand at 970.353 kb on - strand at 970.365 kb on + strand at 970.365 kb on + strand at 970.372 kb on + strand at 970.373 kb on - strand at 970.373 kb on - strand at 970.381 kb on + strand at 970.427 kb on + strand at 970.432 kb on - strand at 970.464 kb on + strand at 970.469 kb on + strand at 970.470 kb on - strand at 970.521 kb on + strand at 970.521 kb on + strand at 970.539 kb on + strand at 970.539 kb on + strand at 970.539 kb on + strand at 970.539 kb on + strand at 970.546 kb on + strand at 970.548 kb on + strand at 970.548 kb on + strand at 970.549 kb on - strand at 970.551 kb on - strand at 970.561 kb on + strand at 970.562 kb on - strand at 970.615 kb on + strand, within BACOVA_05476 at 970.643 kb on + strand, within BACOVA_05476 at 970.660 kb on - strand, within BACOVA_05476 at 970.660 kb on - strand, within BACOVA_05476 at 970.712 kb on - strand, within BACOVA_05476 at 970.713 kb on + strand, within BACOVA_05476 at 970.714 kb on - strand, within BACOVA_05476 at 970.718 kb on + strand, within BACOVA_05476 at 970.723 kb on + strand, within BACOVA_05476 at 970.724 kb on - strand, within BACOVA_05476 at 970.741 kb on - strand, within BACOVA_05476 at 970.787 kb on - strand, within BACOVA_05476 at 970.793 kb on - strand, within BACOVA_05476 at 970.820 kb on + strand, within BACOVA_05476 at 970.835 kb on + strand, within BACOVA_05476 at 970.850 kb on - strand, within BACOVA_05476 at 970.852 kb on + strand, within BACOVA_05476 at 970.852 kb on + strand, within BACOVA_05476 at 970.853 kb on - strand, within BACOVA_05476 at 970.853 kb on - strand, within BACOVA_05476 at 970.883 kb on + strand, within BACOVA_05476 at 970.884 kb on - strand, within BACOVA_05476 at 970.895 kb on - strand, within BACOVA_05476 at 970.951 kb on - strand, within BACOVA_05476 at 970.957 kb on - strand, within BACOVA_05476 at 970.988 kb on + strand, within BACOVA_05476 at 970.989 kb on - strand, within BACOVA_05476 at 970.992 kb on + strand, within BACOVA_05476 at 970.993 kb on - strand, within BACOVA_05476 at 971.034 kb on + strand, within BACOVA_05476 at 971.034 kb on + strand, within BACOVA_05476 at 971.035 kb on - strand, within BACOVA_05476 at 971.088 kb on - strand, within BACOVA_05476 at 971.092 kb on + strand, within BACOVA_05476 at 971.126 kb on + strand, within BACOVA_05476 at 971.126 kb on + strand, within BACOVA_05476 at 971.127 kb on - strand, within BACOVA_05476 at 971.131 kb on + strand, within BACOVA_05476 at 971.132 kb on - strand, within BACOVA_05476 at 971.134 kb on + strand, within BACOVA_05476 at 971.147 kb on + strand, within BACOVA_05476 at 971.162 kb on - strand, within BACOVA_05476 at 971.206 kb on + strand, within BACOVA_05476 at 971.229 kb on - strand, within BACOVA_05476 at 971.229 kb on - strand, within BACOVA_05476 at 971.272 kb on + strand, within BACOVA_05476
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C) remove 967,628 + BACOVA_05474 0.42 +0.4 967,628 + BACOVA_05474 0.42 -0.9 967,629 - BACOVA_05474 0.42 +0.2 967,629 - BACOVA_05474 0.42 +0.1 967,633 + BACOVA_05474 0.42 -1.6 967,650 + BACOVA_05474 0.44 -0.1 967,650 + BACOVA_05474 0.44 -2.3 967,652 + BACOVA_05474 0.44 -1.6 967,686 + BACOVA_05474 0.46 -1.0 967,716 + BACOVA_05474 0.49 +0.1 967,739 - BACOVA_05474 0.50 +0.1 967,768 - BACOVA_05474 0.53 +0.1 967,919 + BACOVA_05474 0.64 -1.3 967,954 - BACOVA_05474 0.67 +0.2 967,961 + BACOVA_05474 0.67 +0.7 967,962 - BACOVA_05474 0.68 -0.1 967,964 + BACOVA_05474 0.68 -1.9 967,965 - BACOVA_05474 0.68 -0.3 967,965 - BACOVA_05474 0.68 -1.6 967,990 - BACOVA_05474 0.70 -0.1 968,016 + BACOVA_05474 0.72 +0.4 968,017 - BACOVA_05474 0.72 -0.7 968,037 - BACOVA_05474 0.73 -0.9 968,042 + BACOVA_05474 0.74 -0.9 968,048 - BACOVA_05474 0.74 -0.3 968,108 - BACOVA_05474 0.79 +0.2 968,108 - BACOVA_05474 0.79 -0.9 968,121 + BACOVA_05474 0.80 -2.4 968,152 + BACOVA_05474 0.82 +0.0 968,153 - BACOVA_05474 0.82 -0.5 968,202 + BACOVA_05474 0.86 +1.0 968,257 + -1.8 968,257 + +0.2 968,273 - -0.3 968,273 - +0.7 968,343 + -0.6 968,344 - +0.1 968,388 + -0.9 968,389 - -0.4 968,633 - +0.7 968,643 + +0.1 968,655 + -0.9 968,656 - -0.6 968,664 - +1.4 968,672 + -1.3 968,672 + +0.1 968,676 + +0.9 968,677 - -0.3 968,677 - +1.9 968,741 + BACOVA_05475 0.10 -0.8 968,741 + BACOVA_05475 0.10 +0.3 968,742 - BACOVA_05475 0.10 +0.7 968,744 - BACOVA_05475 0.10 +0.0 968,744 - BACOVA_05475 0.10 -0.9 968,795 + BACOVA_05475 0.13 -1.4 968,871 + BACOVA_05475 0.18 -1.1 968,871 + BACOVA_05475 0.18 -0.9 968,872 - BACOVA_05475 0.18 +1.3 968,901 + BACOVA_05475 0.20 -0.9 968,915 + BACOVA_05475 0.20 -1.3 968,928 + BACOVA_05475 0.21 -0.4 968,964 - BACOVA_05475 0.23 +0.4 968,969 - BACOVA_05475 0.24 -0.6 968,989 + BACOVA_05475 0.25 +0.7 968,990 - BACOVA_05475 0.25 -0.7 968,990 - BACOVA_05475 0.25 -0.5 969,048 - BACOVA_05475 0.28 -1.1 969,167 - BACOVA_05475 0.35 +1.3 969,186 + BACOVA_05475 0.36 +0.9 969,187 - BACOVA_05475 0.36 -1.3 969,215 - BACOVA_05475 0.38 -2.9 969,252 + BACOVA_05475 0.40 -0.1 969,382 + BACOVA_05475 0.48 +0.7 969,421 - BACOVA_05475 0.50 -0.1 969,487 - BACOVA_05475 0.54 -0.1 969,487 - BACOVA_05475 0.54 -0.9 969,574 + BACOVA_05475 0.59 +0.4 969,644 - BACOVA_05475 0.63 +0.5 969,648 + BACOVA_05475 0.63 -1.5 969,651 + BACOVA_05475 0.64 +0.1 969,657 - BACOVA_05475 0.64 -0.3 969,759 + BACOVA_05475 0.70 -1.1 969,760 - BACOVA_05475 0.70 +0.3 969,760 - BACOVA_05475 0.70 +1.5 969,767 + BACOVA_05475 0.70 +0.4 969,779 - BACOVA_05475 0.71 -0.1 969,802 + BACOVA_05475 0.72 -0.9 969,802 + BACOVA_05475 0.72 -0.5 969,803 - BACOVA_05475 0.72 -0.8 969,820 + BACOVA_05475 0.73 -0.6 969,821 - BACOVA_05475 0.74 +0.4 969,822 + BACOVA_05475 0.74 -0.2 969,822 + BACOVA_05475 0.74 -0.8 969,824 + BACOVA_05475 0.74 +1.1 969,826 + BACOVA_05475 0.74 +0.1 969,857 + BACOVA_05475 0.76 -0.1 969,858 - BACOVA_05475 0.76 +0.8 969,887 - BACOVA_05475 0.77 -0.7 969,906 - BACOVA_05475 0.79 +1.2 969,906 - BACOVA_05475 0.79 -0.5 969,917 + BACOVA_05475 0.79 -1.0 969,977 - BACOVA_05475 0.83 -0.5 969,981 + BACOVA_05475 0.83 +1.5 969,981 + BACOVA_05475 0.83 +0.0 969,986 + BACOVA_05475 0.83 -1.0 969,996 + BACOVA_05475 0.84 +0.5 970,021 - BACOVA_05475 0.85 +0.2 970,036 - BACOVA_05475 0.86 -0.4 970,044 + BACOVA_05475 0.87 -0.5 970,049 - BACOVA_05475 0.87 -0.7 970,061 + BACOVA_05475 0.88 -0.9 970,185 + +1.6 970,193 - +0.7 970,193 - +0.8 970,204 + -0.6 970,205 - -0.7 970,211 - -0.7 970,217 - -0.3 970,217 - +0.2 970,219 - +0.2 970,220 + +0.8 970,220 + +0.7 970,220 + -0.1 970,220 + +0.2 970,221 - -0.2 970,221 - +0.3 970,223 + +0.5 970,223 + +0.4 970,223 + +0.7 970,224 - +0.2 970,225 + -0.6 970,225 + -0.4 970,268 - +0.4 970,292 - -1.8 970,292 - +0.1 970,348 + +0.7 970,353 - -2.1 970,365 + +1.1 970,365 + +0.4 970,372 + -0.3 970,373 - +1.7 970,373 - -1.6 970,381 + +0.6 970,427 + +0.7 970,432 - -1.0 970,464 + -0.3 970,469 + +0.1 970,470 - -0.9 970,521 + +0.2 970,521 + -0.8 970,539 + +0.4 970,539 + +0.1 970,539 + -0.2 970,539 + +1.1 970,546 + +0.7 970,548 + -0.2 970,548 + +0.1 970,549 - -2.5 970,551 - +0.4 970,561 + +0.3 970,562 - -0.3 970,615 + BACOVA_05476 0.11 -0.4 970,643 + BACOVA_05476 0.12 +0.6 970,660 - BACOVA_05476 0.13 -0.8 970,660 - BACOVA_05476 0.13 -1.5 970,712 - BACOVA_05476 0.14 +0.7 970,713 + BACOVA_05476 0.14 +0.2 970,714 - BACOVA_05476 0.14 -0.3 970,718 + BACOVA_05476 0.15 +0.7 970,723 + BACOVA_05476 0.15 +0.7 970,724 - BACOVA_05476 0.15 -0.2 970,741 - BACOVA_05476 0.15 +1.0 970,787 - BACOVA_05476 0.17 +0.4 970,793 - BACOVA_05476 0.17 +0.0 970,820 + BACOVA_05476 0.18 -0.8 970,835 + BACOVA_05476 0.18 -0.6 970,850 - BACOVA_05476 0.19 -0.3 970,852 + BACOVA_05476 0.19 +1.1 970,852 + BACOVA_05476 0.19 +0.2 970,853 - BACOVA_05476 0.19 -0.1 970,853 - BACOVA_05476 0.19 -0.3 970,883 + BACOVA_05476 0.20 +0.3 970,884 - BACOVA_05476 0.20 +0.0 970,895 - BACOVA_05476 0.20 +0.1 970,951 - BACOVA_05476 0.22 +0.3 970,957 - BACOVA_05476 0.22 +1.6 970,988 + BACOVA_05476 0.23 +0.4 970,989 - BACOVA_05476 0.23 -0.3 970,992 + BACOVA_05476 0.23 -0.1 970,993 - BACOVA_05476 0.23 +0.1 971,034 + BACOVA_05476 0.25 +0.0 971,034 + BACOVA_05476 0.25 +0.4 971,035 - BACOVA_05476 0.25 -1.3 971,088 - BACOVA_05476 0.26 -2.0 971,092 + BACOVA_05476 0.26 -0.6 971,126 + BACOVA_05476 0.27 +0.3 971,126 + BACOVA_05476 0.27 +0.2 971,127 - BACOVA_05476 0.27 -0.3 971,131 + BACOVA_05476 0.28 -1.2 971,132 - BACOVA_05476 0.28 +0.1 971,134 + BACOVA_05476 0.28 -0.6 971,147 + BACOVA_05476 0.28 +0.2 971,162 - BACOVA_05476 0.29 -0.5 971,206 + BACOVA_05476 0.30 +1.3 971,229 - BACOVA_05476 0.31 -0.8 971,229 - BACOVA_05476 0.31 +0.3 971,272 + BACOVA_05476 0.32 +0.2
Or see this region's nucleotide sequence