Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04407

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04406 and BACOVA_04407 are separated by 150 nucleotidesBACOVA_04407 and BACOVA_04408 are separated by 73 nucleotidesBACOVA_04408 and BACOVA_04409 overlap by 4 nucleotides BACOVA_04406: BACOVA_04406 - hypothetical protein, at 320,717 to 322,924 _04406 BACOVA_04407: BACOVA_04407 - hypothetical protein, at 323,075 to 323,515 _04407 BACOVA_04408: BACOVA_04408 - hypothetical protein, at 323,589 to 323,933 _04408 BACOVA_04409: BACOVA_04409 - hypothetical protein, at 323,930 to 324,796 _04409 Position (kb) 323 324Strain fitness (log2 ratio) -2 -1 0 1 2at 322.106 kb on + strand, within BACOVA_04406at 322.106 kb on + strand, within BACOVA_04406at 322.106 kb on + strand, within BACOVA_04406at 322.106 kb on + strand, within BACOVA_04406at 322.108 kb on + strand, within BACOVA_04406at 322.130 kb on + strand, within BACOVA_04406at 322.131 kb on - strand, within BACOVA_04406at 322.133 kb on + strand, within BACOVA_04406at 322.134 kb on - strand, within BACOVA_04406at 322.146 kb on + strand, within BACOVA_04406at 322.216 kb on + strand, within BACOVA_04406at 322.218 kb on + strand, within BACOVA_04406at 322.230 kb on - strand, within BACOVA_04406at 322.230 kb on - strand, within BACOVA_04406at 322.230 kb on - strand, within BACOVA_04406at 322.249 kb on + strand, within BACOVA_04406at 322.250 kb on - strand, within BACOVA_04406at 322.261 kb on + strand, within BACOVA_04406at 322.285 kb on - strand, within BACOVA_04406at 322.325 kb on + strand, within BACOVA_04406at 322.326 kb on - strand, within BACOVA_04406at 322.356 kb on - strand, within BACOVA_04406at 322.389 kb on - strand, within BACOVA_04406at 322.389 kb on - strand, within BACOVA_04406at 322.413 kb on - strand, within BACOVA_04406at 322.421 kb on + strand, within BACOVA_04406at 322.433 kb on + strand, within BACOVA_04406at 322.433 kb on + strand, within BACOVA_04406at 322.491 kb on - strand, within BACOVA_04406at 322.491 kb on - strand, within BACOVA_04406at 322.538 kb on + strand, within BACOVA_04406at 322.538 kb on + strand, within BACOVA_04406at 322.538 kb on + strand, within BACOVA_04406at 322.538 kb on + strand, within BACOVA_04406at 322.539 kb on - strand, within BACOVA_04406at 322.539 kb on - strand, within BACOVA_04406at 322.539 kb on - strand, within BACOVA_04406at 322.539 kb on - strand, within BACOVA_04406at 322.549 kb on + strand, within BACOVA_04406at 322.586 kb on + strand, within BACOVA_04406at 322.658 kb on + strand, within BACOVA_04406at 322.658 kb on + strand, within BACOVA_04406at 322.658 kb on + strand, within BACOVA_04406at 322.658 kb on + strand, within BACOVA_04406at 322.659 kb on - strand, within BACOVA_04406at 322.708 kb on + strandat 322.708 kb on + strandat 322.780 kb on + strandat 322.781 kb on - strandat 322.795 kb on + strandat 322.795 kb on + strandat 322.795 kb on + strandat 322.796 kb on - strandat 322.815 kb on + strandat 322.815 kb on + strandat 322.845 kb on + strandat 322.856 kb on + strandat 322.899 kb on + strandat 322.899 kb on + strandat 322.900 kb on - strandat 322.927 kb on + strandat 322.927 kb on + strandat 322.928 kb on - strandat 322.928 kb on - strandat 322.937 kb on + strandat 322.951 kb on - strandat 323.028 kb on - strandat 323.069 kb on - strandat 323.095 kb on + strandat 323.095 kb on + strandat 323.096 kb on - strandat 323.096 kb on - strandat 323.105 kb on + strandat 323.106 kb on - strandat 323.106 kb on - strandat 323.107 kb on + strandat 323.107 kb on + strandat 323.108 kb on - strandat 323.108 kb on - strandat 323.108 kb on - strandat 323.108 kb on - strandat 323.108 kb on - strandat 323.109 kb on + strandat 323.110 kb on - strandat 323.195 kb on + strand, within BACOVA_04407at 323.196 kb on - strand, within BACOVA_04407at 323.254 kb on - strand, within BACOVA_04407at 323.288 kb on - strand, within BACOVA_04407at 323.335 kb on - strand, within BACOVA_04407at 323.365 kb on - strand, within BACOVA_04407at 323.365 kb on - strand, within BACOVA_04407at 323.472 kb on + strandat 323.488 kb on + strandat 323.512 kb on - strandat 323.514 kb on - strandat 323.537 kb on + strandat 323.538 kb on - strandat 323.538 kb on - strandat 323.630 kb on + strand, within BACOVA_04408at 323.679 kb on + strand, within BACOVA_04408at 323.680 kb on - strand, within BACOVA_04408at 323.680 kb on - strand, within BACOVA_04408at 323.680 kb on - strand, within BACOVA_04408at 323.828 kb on + strand, within BACOVA_04408at 323.828 kb on + strand, within BACOVA_04408at 323.829 kb on - strand, within BACOVA_04408at 323.830 kb on + strand, within BACOVA_04408at 323.831 kb on - strand, within BACOVA_04408at 323.839 kb on - strand, within BACOVA_04408at 323.893 kb on - strand, within BACOVA_04408at 323.893 kb on - strand, within BACOVA_04408at 323.893 kb on - strand, within BACOVA_04408at 323.895 kb on + strand, within BACOVA_04408at 323.895 kb on + strand, within BACOVA_04408at 323.896 kb on - strand, within BACOVA_04408at 323.943 kb on + strandat 323.947 kb on + strandat 323.948 kb on - strandat 323.948 kb on - strandat 323.949 kb on + strandat 323.951 kb on + strandat 323.952 kb on - strandat 324.044 kb on - strand, within BACOVA_04409at 324.104 kb on + strand, within BACOVA_04409at 324.104 kb on + strand, within BACOVA_04409at 324.105 kb on - strand, within BACOVA_04409at 324.106 kb on + strand, within BACOVA_04409at 324.161 kb on - strand, within BACOVA_04409at 324.173 kb on + strand, within BACOVA_04409at 324.191 kb on + strand, within BACOVA_04409at 324.191 kb on + strand, within BACOVA_04409at 324.192 kb on - strand, within BACOVA_04409at 324.247 kb on + strand, within BACOVA_04409at 324.247 kb on + strand, within BACOVA_04409at 324.248 kb on - strand, within BACOVA_04409at 324.248 kb on - strand, within BACOVA_04409at 324.286 kb on - strand, within BACOVA_04409at 324.325 kb on + strand, within BACOVA_04409at 324.326 kb on - strand, within BACOVA_04409at 324.327 kb on + strand, within BACOVA_04409at 324.327 kb on + strand, within BACOVA_04409at 324.328 kb on - strand, within BACOVA_04409at 324.461 kb on + strand, within BACOVA_04409at 324.509 kb on + strand, within BACOVA_04409at 324.510 kb on - strand, within BACOVA_04409at 324.513 kb on - strand, within BACOVA_04409

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
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322,106 + BACOVA_04406 0.63 +0.1
322,106 + BACOVA_04406 0.63 +0.5
322,106 + BACOVA_04406 0.63 -0.5
322,106 + BACOVA_04406 0.63 +1.7
322,108 + BACOVA_04406 0.63 -1.0
322,130 + BACOVA_04406 0.64 -0.9
322,131 - BACOVA_04406 0.64 +0.7
322,133 + BACOVA_04406 0.64 -0.5
322,134 - BACOVA_04406 0.64 +0.4
322,146 + BACOVA_04406 0.65 +0.3
322,216 + BACOVA_04406 0.68 -0.5
322,218 + BACOVA_04406 0.68 -1.9
322,230 - BACOVA_04406 0.69 +1.0
322,230 - BACOVA_04406 0.69 -0.3
322,230 - BACOVA_04406 0.69 +1.1
322,249 + BACOVA_04406 0.69 +0.2
322,250 - BACOVA_04406 0.69 -1.3
322,261 + BACOVA_04406 0.70 +1.0
322,285 - BACOVA_04406 0.71 -0.2
322,325 + BACOVA_04406 0.73 -1.3
322,326 - BACOVA_04406 0.73 +0.5
322,356 - BACOVA_04406 0.74 +0.2
322,389 - BACOVA_04406 0.76 -1.9
322,389 - BACOVA_04406 0.76 -0.3
322,413 - BACOVA_04406 0.77 +0.5
322,421 + BACOVA_04406 0.77 -0.5
322,433 + BACOVA_04406 0.78 +1.5
322,433 + BACOVA_04406 0.78 -0.6
322,491 - BACOVA_04406 0.80 +0.1
322,491 - BACOVA_04406 0.80 -0.8
322,538 + BACOVA_04406 0.82 +0.1
322,538 + BACOVA_04406 0.82 +0.6
322,538 + BACOVA_04406 0.82 +1.7
322,538 + BACOVA_04406 0.82 -0.6
322,539 - BACOVA_04406 0.83 -0.6
322,539 - BACOVA_04406 0.83 -0.3
322,539 - BACOVA_04406 0.83 -1.0
322,539 - BACOVA_04406 0.83 +0.7
322,549 + BACOVA_04406 0.83 -1.8
322,586 + BACOVA_04406 0.85 +0.4
322,658 + BACOVA_04406 0.88 -0.7
322,658 + BACOVA_04406 0.88 -0.3
322,658 + BACOVA_04406 0.88 +0.7
322,658 + BACOVA_04406 0.88 -0.5
322,659 - BACOVA_04406 0.88 +0.7
322,708 + +0.2
322,708 + -0.3
322,780 + +1.5
322,781 - +1.0
322,795 + -0.5
322,795 + +0.4
322,795 + -0.3
322,796 - -1.6
322,815 + -0.5
322,815 + +2.1
322,845 + -0.3
322,856 + +0.7
322,899 + +0.2
322,899 + -0.7
322,900 - -0.1
322,927 + +0.7
322,927 + -0.6
322,928 - -0.6
322,928 - +0.4
322,937 + +1.7
322,951 - +0.1
323,028 - -0.7
323,069 - -0.0
323,095 + +0.3
323,095 + -0.3
323,096 - -1.0
323,096 - -0.0
323,105 + +0.1
323,106 - -0.0
323,106 - +0.4
323,107 + +1.6
323,107 + +1.1
323,108 - +0.1
323,108 - -1.6
323,108 - +0.3
323,108 - +1.6
323,108 - -0.7
323,109 + +1.0
323,110 - -1.3
323,195 + BACOVA_04407 0.27 +0.2
323,196 - BACOVA_04407 0.27 -0.6
323,254 - BACOVA_04407 0.41 +0.6
323,288 - BACOVA_04407 0.48 -0.1
323,335 - BACOVA_04407 0.59 +0.4
323,365 - BACOVA_04407 0.66 -1.0
323,365 - BACOVA_04407 0.66 -0.1
323,472 + +0.5
323,488 + -0.6
323,512 - -0.6
323,514 - +0.3
323,537 + +0.2
323,538 - -2.2
323,538 - +1.2
323,630 + BACOVA_04408 0.12 +1.4
323,679 + BACOVA_04408 0.26 +1.4
323,680 - BACOVA_04408 0.26 +0.6
323,680 - BACOVA_04408 0.26 +0.7
323,680 - BACOVA_04408 0.26 +0.4
323,828 + BACOVA_04408 0.69 +0.7
323,828 + BACOVA_04408 0.69 +0.2
323,829 - BACOVA_04408 0.70 -0.0
323,830 + BACOVA_04408 0.70 -0.0
323,831 - BACOVA_04408 0.70 -0.0
323,839 - BACOVA_04408 0.72 -0.3
323,893 - BACOVA_04408 0.88 +1.1
323,893 - BACOVA_04408 0.88 -0.3
323,893 - BACOVA_04408 0.88 -1.4
323,895 + BACOVA_04408 0.89 -0.1
323,895 + BACOVA_04408 0.89 -0.6
323,896 - BACOVA_04408 0.89 +0.5
323,943 + +1.0
323,947 + -0.0
323,948 - -0.3
323,948 - -0.5
323,949 + -0.1
323,951 + +1.1
323,952 - +0.3
324,044 - BACOVA_04409 0.13 +0.6
324,104 + BACOVA_04409 0.20 +0.3
324,104 + BACOVA_04409 0.20 -2.7
324,105 - BACOVA_04409 0.20 +1.7
324,106 + BACOVA_04409 0.20 -0.1
324,161 - BACOVA_04409 0.27 -0.2
324,173 + BACOVA_04409 0.28 -0.9
324,191 + BACOVA_04409 0.30 -0.1
324,191 + BACOVA_04409 0.30 +0.9
324,192 - BACOVA_04409 0.30 -0.6
324,247 + BACOVA_04409 0.37 +2.3
324,247 + BACOVA_04409 0.37 +1.1
324,248 - BACOVA_04409 0.37 -0.4
324,248 - BACOVA_04409 0.37 -1.1
324,286 - BACOVA_04409 0.41 -0.2
324,325 + BACOVA_04409 0.46 -0.1
324,326 - BACOVA_04409 0.46 +0.4
324,327 + BACOVA_04409 0.46 -0.0
324,327 + BACOVA_04409 0.46 +1.8
324,328 - BACOVA_04409 0.46 -0.7
324,461 + BACOVA_04409 0.61 +1.1
324,509 + BACOVA_04409 0.67 +0.1
324,510 - BACOVA_04409 0.67 -0.4
324,513 - BACOVA_04409 0.67 -1.7

Or see this region's nucleotide sequence