Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04033

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04032 and BACOVA_04033 are separated by 63 nucleotidesBACOVA_04033 and BACOVA_04034 are separated by 63 nucleotidesBACOVA_04034 and BACOVA_04035 are separated by 96 nucleotides BACOVA_04032: BACOVA_04032 - hypothetical protein, at 364,469 to 365,716 _04032 BACOVA_04033: BACOVA_04033 - hypothetical protein, at 365,780 to 365,908 _04033 BACOVA_04034: BACOVA_04034 - putative YigZ family protein, at 365,972 to 366,589 _04034 BACOVA_04035: BACOVA_04035 - hypothetical protein, at 366,686 to 367,435 _04035 Position (kb) 365 366Strain fitness (log2 ratio) -2 -1 0 1 2 3at 364.796 kb on + strand, within BACOVA_04032at 364.796 kb on + strand, within BACOVA_04032at 364.797 kb on - strand, within BACOVA_04032at 364.810 kb on + strand, within BACOVA_04032at 364.819 kb on + strand, within BACOVA_04032at 364.820 kb on - strand, within BACOVA_04032at 364.841 kb on - strand, within BACOVA_04032at 364.867 kb on + strand, within BACOVA_04032at 364.868 kb on - strand, within BACOVA_04032at 364.878 kb on + strand, within BACOVA_04032at 364.878 kb on + strand, within BACOVA_04032at 364.945 kb on + strand, within BACOVA_04032at 364.945 kb on + strand, within BACOVA_04032at 364.945 kb on + strand, within BACOVA_04032at 364.946 kb on - strand, within BACOVA_04032at 364.958 kb on + strand, within BACOVA_04032at 364.959 kb on - strand, within BACOVA_04032at 364.979 kb on + strand, within BACOVA_04032at 365.015 kb on - strand, within BACOVA_04032at 365.044 kb on + strand, within BACOVA_04032at 365.056 kb on + strand, within BACOVA_04032at 365.057 kb on - strand, within BACOVA_04032at 365.089 kb on + strand, within BACOVA_04032at 365.186 kb on + strand, within BACOVA_04032at 365.234 kb on + strand, within BACOVA_04032at 365.306 kb on + strand, within BACOVA_04032at 365.333 kb on + strand, within BACOVA_04032at 365.333 kb on + strand, within BACOVA_04032at 365.333 kb on + strand, within BACOVA_04032at 365.333 kb on + strand, within BACOVA_04032at 365.334 kb on - strand, within BACOVA_04032at 365.334 kb on - strand, within BACOVA_04032at 365.377 kb on + strand, within BACOVA_04032at 365.411 kb on + strand, within BACOVA_04032at 365.411 kb on + strand, within BACOVA_04032at 365.412 kb on - strand, within BACOVA_04032at 365.412 kb on - strand, within BACOVA_04032at 365.413 kb on + strand, within BACOVA_04032at 365.414 kb on - strand, within BACOVA_04032at 365.428 kb on + strand, within BACOVA_04032at 365.447 kb on - strand, within BACOVA_04032at 365.485 kb on + strand, within BACOVA_04032at 365.486 kb on - strand, within BACOVA_04032at 365.608 kb on + strandat 365.608 kb on + strandat 365.609 kb on - strandat 365.627 kb on - strandat 365.635 kb on + strandat 365.644 kb on + strandat 365.644 kb on + strandat 365.645 kb on - strandat 365.647 kb on + strandat 365.648 kb on - strandat 365.648 kb on - strandat 365.702 kb on - strandat 365.704 kb on + strandat 365.709 kb on + strandat 365.768 kb on + strandat 365.769 kb on - strandat 365.810 kb on + strand, within BACOVA_04033at 365.811 kb on - strand, within BACOVA_04033at 365.841 kb on + strand, within BACOVA_04033at 365.841 kb on + strand, within BACOVA_04033at 365.842 kb on - strand, within BACOVA_04033at 365.844 kb on - strand, within BACOVA_04033at 365.844 kb on - strand, within BACOVA_04033at 365.919 kb on - strandat 365.919 kb on - strandat 365.987 kb on - strandat 365.990 kb on + strandat 365.991 kb on - strandat 365.991 kb on - strandat 365.992 kb on + strandat 366.020 kb on - strandat 366.024 kb on - strandat 366.024 kb on - strandat 366.053 kb on - strand, within BACOVA_04034at 366.084 kb on + strand, within BACOVA_04034at 366.104 kb on + strand, within BACOVA_04034at 366.117 kb on - strand, within BACOVA_04034at 366.117 kb on - strand, within BACOVA_04034at 366.120 kb on - strand, within BACOVA_04034at 366.136 kb on - strand, within BACOVA_04034at 366.136 kb on - strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.147 kb on - strand, within BACOVA_04034at 366.148 kb on + strand, within BACOVA_04034at 366.149 kb on - strand, within BACOVA_04034at 366.221 kb on - strand, within BACOVA_04034at 366.258 kb on + strand, within BACOVA_04034at 366.259 kb on - strand, within BACOVA_04034at 366.365 kb on - strand, within BACOVA_04034at 366.415 kb on + strand, within BACOVA_04034at 366.415 kb on + strand, within BACOVA_04034at 366.473 kb on + strand, within BACOVA_04034at 366.487 kb on + strand, within BACOVA_04034at 366.523 kb on + strand, within BACOVA_04034at 366.524 kb on - strand, within BACOVA_04034at 366.580 kb on + strandat 366.588 kb on - strandat 366.591 kb on + strandat 366.592 kb on - strandat 366.600 kb on - strandat 366.605 kb on + strandat 366.609 kb on - strandat 366.611 kb on + strandat 366.636 kb on + strandat 366.681 kb on + strandat 366.739 kb on + strandat 366.740 kb on - strandat 366.832 kb on + strand, within BACOVA_04035at 366.851 kb on - strand, within BACOVA_04035at 366.860 kb on - strand, within BACOVA_04035at 366.893 kb on + strand, within BACOVA_04035at 366.893 kb on + strand, within BACOVA_04035

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
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364,796 + BACOVA_04032 0.26 -1.2
364,796 + BACOVA_04032 0.26 +0.3
364,797 - BACOVA_04032 0.26 -1.3
364,810 + BACOVA_04032 0.27 -0.8
364,819 + BACOVA_04032 0.28 -1.7
364,820 - BACOVA_04032 0.28 +0.5
364,841 - BACOVA_04032 0.30 -2.2
364,867 + BACOVA_04032 0.32 -0.4
364,868 - BACOVA_04032 0.32 -2.0
364,878 + BACOVA_04032 0.33 -0.8
364,878 + BACOVA_04032 0.33 -0.2
364,945 + BACOVA_04032 0.38 -1.2
364,945 + BACOVA_04032 0.38 -1.1
364,945 + BACOVA_04032 0.38 -0.8
364,946 - BACOVA_04032 0.38 -0.7
364,958 + BACOVA_04032 0.39 -1.1
364,959 - BACOVA_04032 0.39 +0.8
364,979 + BACOVA_04032 0.41 -0.1
365,015 - BACOVA_04032 0.44 -0.8
365,044 + BACOVA_04032 0.46 +0.2
365,056 + BACOVA_04032 0.47 -0.4
365,057 - BACOVA_04032 0.47 -1.6
365,089 + BACOVA_04032 0.50 -0.7
365,186 + BACOVA_04032 0.57 +0.1
365,234 + BACOVA_04032 0.61 -0.1
365,306 + BACOVA_04032 0.67 +1.6
365,333 + BACOVA_04032 0.69 -0.5
365,333 + BACOVA_04032 0.69 -0.3
365,333 + BACOVA_04032 0.69 +1.0
365,333 + BACOVA_04032 0.69 +0.6
365,334 - BACOVA_04032 0.69 -1.0
365,334 - BACOVA_04032 0.69 -0.1
365,377 + BACOVA_04032 0.73 +0.4
365,411 + BACOVA_04032 0.75 -0.1
365,411 + BACOVA_04032 0.75 -0.0
365,412 - BACOVA_04032 0.76 +1.5
365,412 - BACOVA_04032 0.76 -0.9
365,413 + BACOVA_04032 0.76 +0.0
365,414 - BACOVA_04032 0.76 -1.4
365,428 + BACOVA_04032 0.77 -0.2
365,447 - BACOVA_04032 0.78 +0.0
365,485 + BACOVA_04032 0.81 -0.8
365,486 - BACOVA_04032 0.81 +1.0
365,608 + +0.2
365,608 + -1.1
365,609 - -2.4
365,627 - -0.4
365,635 + +0.2
365,644 + -0.3
365,644 + -1.6
365,645 - -1.1
365,647 + -1.0
365,648 - +0.4
365,648 - +0.0
365,702 - +0.3
365,704 + +0.6
365,709 + +0.6
365,768 + -0.4
365,769 - -0.3
365,810 + BACOVA_04033 0.23 +1.0
365,811 - BACOVA_04033 0.24 +0.8
365,841 + BACOVA_04033 0.47 +0.2
365,841 + BACOVA_04033 0.47 +0.3
365,842 - BACOVA_04033 0.48 +3.2
365,844 - BACOVA_04033 0.50 +1.4
365,844 - BACOVA_04033 0.50 -1.7
365,919 - -0.4
365,919 - -1.9
365,987 - -0.4
365,990 + +0.6
365,991 - +0.6
365,991 - -0.6
365,992 + +1.6
366,020 - -0.7
366,024 - +0.6
366,024 - -0.7
366,053 - BACOVA_04034 0.13 +0.6
366,084 + BACOVA_04034 0.18 -1.0
366,104 + BACOVA_04034 0.21 -1.7
366,117 - BACOVA_04034 0.23 +0.2
366,117 - BACOVA_04034 0.23 +0.4
366,120 - BACOVA_04034 0.24 -1.0
366,136 - BACOVA_04034 0.27 +0.6
366,136 - BACOVA_04034 0.27 -1.1
366,146 + BACOVA_04034 0.28 -0.4
366,146 + BACOVA_04034 0.28 -1.2
366,146 + BACOVA_04034 0.28 -0.7
366,146 + BACOVA_04034 0.28 +1.6
366,147 - BACOVA_04034 0.28 -0.7
366,148 + BACOVA_04034 0.28 -0.7
366,149 - BACOVA_04034 0.29 +0.8
366,221 - BACOVA_04034 0.40 -0.4
366,258 + BACOVA_04034 0.46 +0.1
366,259 - BACOVA_04034 0.46 -1.1
366,365 - BACOVA_04034 0.64 -0.2
366,415 + BACOVA_04034 0.72 -0.7
366,415 + BACOVA_04034 0.72 +1.6
366,473 + BACOVA_04034 0.81 -1.4
366,487 + BACOVA_04034 0.83 +1.3
366,523 + BACOVA_04034 0.89 -0.4
366,524 - BACOVA_04034 0.89 +0.1
366,580 + -0.1
366,588 - -0.1
366,591 + -0.1
366,592 - -0.4
366,600 - +0.6
366,605 + -0.7
366,609 - -1.2
366,611 + +0.0
366,636 + -0.1
366,681 + +1.1
366,739 + +1.1
366,740 - -0.2
366,832 + BACOVA_04035 0.19 -2.7
366,851 - BACOVA_04035 0.22 -0.1
366,860 - BACOVA_04035 0.23 -1.0
366,893 + BACOVA_04035 0.28 +0.6
366,893 + BACOVA_04035 0.28 +0.2

Or see this region's nucleotide sequence