Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02293

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02292 and BACOVA_02293 are separated by 471 nucleotidesBACOVA_02293 and BACOVA_02294 overlap by 4 nucleotidesBACOVA_02294 and BACOVA_02295 are separated by 76 nucleotides BACOVA_02292: BACOVA_02292 - hypothetical protein, at 62,786 to 63,763 _02292 BACOVA_02293: BACOVA_02293 - hypothetical protein, at 64,235 to 64,834 _02293 BACOVA_02294: BACOVA_02294 - hypothetical protein, at 64,831 to 65,604 _02294 BACOVA_02295: BACOVA_02295 - hypothetical protein, at 65,681 to 65,809 _02295 Position (kb) 64 65Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 63.316 kb on + strand, within BACOVA_02292at 63.322 kb on - strand, within BACOVA_02292at 63.324 kb on - strand, within BACOVA_02292at 63.324 kb on - strand, within BACOVA_02292at 63.388 kb on + strand, within BACOVA_02292at 63.443 kb on + strand, within BACOVA_02292at 63.443 kb on + strand, within BACOVA_02292at 63.486 kb on + strand, within BACOVA_02292at 63.486 kb on + strand, within BACOVA_02292at 63.517 kb on - strand, within BACOVA_02292at 63.573 kb on - strand, within BACOVA_02292at 63.574 kb on + strand, within BACOVA_02292at 63.575 kb on - strand, within BACOVA_02292at 63.575 kb on - strand, within BACOVA_02292at 63.597 kb on + strand, within BACOVA_02292at 63.597 kb on + strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.666 kb on - strandat 63.682 kb on - strandat 63.702 kb on + strandat 63.707 kb on - strandat 63.707 kb on - strandat 63.707 kb on - strandat 63.718 kb on + strandat 63.743 kb on - strandat 63.748 kb on - strandat 63.748 kb on - strandat 63.748 kb on - strandat 63.748 kb on - strandat 63.812 kb on - strandat 63.879 kb on + strandat 63.894 kb on - strandat 63.937 kb on + strandat 63.938 kb on - strandat 63.938 kb on - strandat 63.941 kb on + strandat 63.965 kb on + strandat 63.980 kb on + strandat 63.980 kb on + strandat 64.022 kb on - strandat 64.143 kb on - strandat 64.159 kb on - strandat 64.231 kb on + strandat 64.235 kb on - strandat 64.235 kb on - strandat 64.266 kb on + strandat 64.266 kb on + strandat 64.288 kb on + strandat 64.309 kb on + strand, within BACOVA_02293at 64.321 kb on - strand, within BACOVA_02293at 64.355 kb on - strand, within BACOVA_02293at 64.378 kb on - strand, within BACOVA_02293at 64.378 kb on - strand, within BACOVA_02293at 64.381 kb on + strand, within BACOVA_02293at 64.382 kb on - strand, within BACOVA_02293at 64.383 kb on + strand, within BACOVA_02293at 64.450 kb on + strand, within BACOVA_02293at 64.490 kb on + strand, within BACOVA_02293at 64.490 kb on + strand, within BACOVA_02293at 64.491 kb on - strand, within BACOVA_02293at 64.528 kb on + strand, within BACOVA_02293at 64.528 kb on + strand, within BACOVA_02293at 64.529 kb on - strand, within BACOVA_02293at 64.608 kb on - strand, within BACOVA_02293at 64.612 kb on + strand, within BACOVA_02293at 64.648 kb on + strand, within BACOVA_02293at 64.648 kb on + strand, within BACOVA_02293at 64.651 kb on + strand, within BACOVA_02293at 64.651 kb on + strand, within BACOVA_02293at 64.734 kb on + strand, within BACOVA_02293at 64.811 kb on + strandat 64.812 kb on - strandat 64.814 kb on - strandat 64.816 kb on - strandat 64.816 kb on - strandat 64.970 kb on + strand, within BACOVA_02294at 64.994 kb on + strand, within BACOVA_02294at 65.001 kb on + strand, within BACOVA_02294at 65.001 kb on + strand, within BACOVA_02294at 65.002 kb on - strand, within BACOVA_02294at 65.002 kb on - strand, within BACOVA_02294at 65.005 kb on + strand, within BACOVA_02294at 65.005 kb on + strand, within BACOVA_02294at 65.006 kb on - strand, within BACOVA_02294at 65.006 kb on - strand, within BACOVA_02294at 65.006 kb on - strand, within BACOVA_02294at 65.031 kb on + strand, within BACOVA_02294at 65.052 kb on + strand, within BACOVA_02294at 65.052 kb on + strand, within BACOVA_02294at 65.086 kb on - strand, within BACOVA_02294at 65.133 kb on + strand, within BACOVA_02294at 65.146 kb on + strand, within BACOVA_02294at 65.201 kb on - strand, within BACOVA_02294at 65.201 kb on - strand, within BACOVA_02294at 65.205 kb on + strand, within BACOVA_02294at 65.205 kb on + strand, within BACOVA_02294at 65.244 kb on - strand, within BACOVA_02294at 65.256 kb on + strand, within BACOVA_02294at 65.321 kb on + strand, within BACOVA_02294at 65.325 kb on + strand, within BACOVA_02294at 65.325 kb on + strand, within BACOVA_02294at 65.326 kb on - strand, within BACOVA_02294at 65.336 kb on + strand, within BACOVA_02294at 65.336 kb on + strand, within BACOVA_02294at 65.337 kb on - strand, within BACOVA_02294at 65.347 kb on - strand, within BACOVA_02294at 65.347 kb on - strand, within BACOVA_02294at 65.365 kb on - strand, within BACOVA_02294at 65.385 kb on + strand, within BACOVA_02294at 65.429 kb on + strand, within BACOVA_02294at 65.467 kb on - strand, within BACOVA_02294at 65.469 kb on + strand, within BACOVA_02294at 65.470 kb on - strand, within BACOVA_02294at 65.483 kb on + strand, within BACOVA_02294at 65.490 kb on + strand, within BACOVA_02294at 65.490 kb on + strand, within BACOVA_02294at 65.545 kb on - strandat 65.578 kb on + strandat 65.592 kb on + strandat 65.593 kb on - strandat 65.594 kb on + strandat 65.594 kb on + strandat 65.597 kb on + strandat 65.606 kb on - strandat 65.628 kb on + strandat 65.629 kb on - strandat 65.683 kb on - strandat 65.704 kb on + strand, within BACOVA_02295at 65.705 kb on - strand, within BACOVA_02295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
remove
63,316 + BACOVA_02292 0.54 +0.3
63,322 - BACOVA_02292 0.55 +0.2
63,324 - BACOVA_02292 0.55 +0.6
63,324 - BACOVA_02292 0.55 -0.2
63,388 + BACOVA_02292 0.62 -1.8
63,443 + BACOVA_02292 0.67 +0.2
63,443 + BACOVA_02292 0.67 -4.4
63,486 + BACOVA_02292 0.72 +0.4
63,486 + BACOVA_02292 0.72 -2.1
63,517 - BACOVA_02292 0.75 +0.6
63,573 - BACOVA_02292 0.80 +1.3
63,574 + BACOVA_02292 0.81 +0.6
63,575 - BACOVA_02292 0.81 -1.1
63,575 - BACOVA_02292 0.81 +0.2
63,597 + BACOVA_02292 0.83 +1.2
63,597 + BACOVA_02292 0.83 +1.3
63,598 - BACOVA_02292 0.83 +0.7
63,598 - BACOVA_02292 0.83 -0.5
63,598 - BACOVA_02292 0.83 -0.5
63,598 - BACOVA_02292 0.83 +0.5
63,598 - BACOVA_02292 0.83 +0.6
63,598 - BACOVA_02292 0.83 -0.6
63,666 - -0.0
63,682 - +1.1
63,702 + -0.6
63,707 - -0.4
63,707 - -1.4
63,707 - -0.8
63,718 + +0.3
63,743 - +0.4
63,748 - -0.1
63,748 - +0.3
63,748 - +0.6
63,748 - +2.2
63,812 - +0.6
63,879 + -0.0
63,894 - -1.3
63,937 + +0.6
63,938 - -1.2
63,938 - +2.8
63,941 + -0.5
63,965 + +0.2
63,980 + +0.4
63,980 + -0.4
64,022 - +0.5
64,143 - +1.4
64,159 - -0.0
64,231 + -1.0
64,235 - -0.2
64,235 - -0.4
64,266 + +0.4
64,266 + +0.6
64,288 + -0.4
64,309 + BACOVA_02293 0.12 +0.5
64,321 - BACOVA_02293 0.14 -0.0
64,355 - BACOVA_02293 0.20 +0.6
64,378 - BACOVA_02293 0.24 -0.1
64,378 - BACOVA_02293 0.24 +1.0
64,381 + BACOVA_02293 0.24 +0.2
64,382 - BACOVA_02293 0.24 -1.8
64,383 + BACOVA_02293 0.25 -1.2
64,450 + BACOVA_02293 0.36 +0.3
64,490 + BACOVA_02293 0.42 +0.1
64,490 + BACOVA_02293 0.42 +1.8
64,491 - BACOVA_02293 0.43 +0.2
64,528 + BACOVA_02293 0.49 -0.4
64,528 + BACOVA_02293 0.49 +0.4
64,529 - BACOVA_02293 0.49 +0.3
64,608 - BACOVA_02293 0.62 +0.4
64,612 + BACOVA_02293 0.63 -0.2
64,648 + BACOVA_02293 0.69 -0.3
64,648 + BACOVA_02293 0.69 -0.2
64,651 + BACOVA_02293 0.69 -1.0
64,651 + BACOVA_02293 0.69 +1.4
64,734 + BACOVA_02293 0.83 -0.9
64,811 + +0.2
64,812 - -1.0
64,814 - +0.8
64,816 - +0.7
64,816 - +0.3
64,970 + BACOVA_02294 0.18 +0.3
64,994 + BACOVA_02294 0.21 -2.1
65,001 + BACOVA_02294 0.22 +0.7
65,001 + BACOVA_02294 0.22 +1.7
65,002 - BACOVA_02294 0.22 +0.3
65,002 - BACOVA_02294 0.22 +0.6
65,005 + BACOVA_02294 0.22 +0.3
65,005 + BACOVA_02294 0.22 +0.2
65,006 - BACOVA_02294 0.23 -0.0
65,006 - BACOVA_02294 0.23 -0.3
65,006 - BACOVA_02294 0.23 +0.9
65,031 + BACOVA_02294 0.26 -1.0
65,052 + BACOVA_02294 0.29 +0.3
65,052 + BACOVA_02294 0.29 +0.3
65,086 - BACOVA_02294 0.33 -0.0
65,133 + BACOVA_02294 0.39 +0.4
65,146 + BACOVA_02294 0.41 -0.1
65,201 - BACOVA_02294 0.48 +1.0
65,201 - BACOVA_02294 0.48 +2.9
65,205 + BACOVA_02294 0.48 -0.4
65,205 + BACOVA_02294 0.48 -0.8
65,244 - BACOVA_02294 0.53 +0.7
65,256 + BACOVA_02294 0.55 +1.2
65,321 + BACOVA_02294 0.63 +0.2
65,325 + BACOVA_02294 0.64 -0.6
65,325 + BACOVA_02294 0.64 -0.4
65,326 - BACOVA_02294 0.64 +1.0
65,336 + BACOVA_02294 0.65 -0.4
65,336 + BACOVA_02294 0.65 -0.4
65,337 - BACOVA_02294 0.65 -0.2
65,347 - BACOVA_02294 0.67 -0.2
65,347 - BACOVA_02294 0.67 +0.4
65,365 - BACOVA_02294 0.69 +0.2
65,385 + BACOVA_02294 0.72 +0.3
65,429 + BACOVA_02294 0.77 +0.6
65,467 - BACOVA_02294 0.82 -0.2
65,469 + BACOVA_02294 0.82 +0.7
65,470 - BACOVA_02294 0.83 -0.2
65,483 + BACOVA_02294 0.84 +0.5
65,490 + BACOVA_02294 0.85 -0.5
65,490 + BACOVA_02294 0.85 -0.3
65,545 - +1.6
65,578 + +0.4
65,592 + +0.7
65,593 - +0.7
65,594 + +0.2
65,594 + +0.6
65,597 + +3.2
65,606 - -0.1
65,628 + +0.5
65,629 - -0.2
65,683 - +0.1
65,704 + BACOVA_02295 0.18 -0.5
65,705 - BACOVA_02295 0.19 -0.0

Or see this region's nucleotide sequence