Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00830

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00829 and BACOVA_00830 are separated by 12 nucleotidesBACOVA_00830 and BACOVA_00831 are separated by 39 nucleotidesBACOVA_00831 and BACOVA_00832 are separated by 162 nucleotides BACOVA_00829: BACOVA_00829 - hypothetical protein, at 79,832 to 81,055 _00829 BACOVA_00830: BACOVA_00830 - nitrite reductase, at 81,068 to 82,549 _00830 BACOVA_00831: BACOVA_00831 - cytochrome c nitrate reductase, small subunit, at 82,589 to 83,188 _00831 BACOVA_00832: BACOVA_00832 - hypothetical protein, at 83,351 to 83,842 _00832 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 80.123 kb on + strand, within BACOVA_00829at 80.128 kb on + strand, within BACOVA_00829at 80.186 kb on + strand, within BACOVA_00829at 80.244 kb on + strand, within BACOVA_00829at 80.244 kb on + strand, within BACOVA_00829at 80.245 kb on - strand, within BACOVA_00829at 80.245 kb on - strand, within BACOVA_00829at 80.329 kb on + strand, within BACOVA_00829at 80.382 kb on - strand, within BACOVA_00829at 80.387 kb on + strand, within BACOVA_00829at 80.387 kb on + strand, within BACOVA_00829at 80.388 kb on - strand, within BACOVA_00829at 80.388 kb on - strand, within BACOVA_00829at 80.388 kb on - strand, within BACOVA_00829at 80.410 kb on + strand, within BACOVA_00829at 80.451 kb on + strand, within BACOVA_00829at 80.512 kb on + strand, within BACOVA_00829at 80.609 kb on - strand, within BACOVA_00829at 80.620 kb on + strand, within BACOVA_00829at 80.831 kb on + strand, within BACOVA_00829at 80.831 kb on + strand, within BACOVA_00829at 80.832 kb on - strand, within BACOVA_00829at 80.854 kb on - strand, within BACOVA_00829at 80.877 kb on + strand, within BACOVA_00829at 80.877 kb on + strand, within BACOVA_00829at 80.878 kb on - strand, within BACOVA_00829at 80.922 kb on + strand, within BACOVA_00829at 80.923 kb on - strand, within BACOVA_00829at 80.931 kb on - strand, within BACOVA_00829at 80.973 kb on - strandat 80.973 kb on - strandat 81.006 kb on - strandat 81.055 kb on + strandat 81.056 kb on - strandat 81.056 kb on - strandat 81.057 kb on + strandat 81.057 kb on + strandat 81.058 kb on - strandat 81.058 kb on - strandat 81.059 kb on + strandat 81.179 kb on - strandat 81.180 kb on + strandat 81.181 kb on - strandat 81.181 kb on - strandat 81.232 kb on + strand, within BACOVA_00830at 81.233 kb on - strand, within BACOVA_00830at 81.252 kb on - strand, within BACOVA_00830at 81.445 kb on + strand, within BACOVA_00830at 81.455 kb on - strand, within BACOVA_00830at 81.519 kb on + strand, within BACOVA_00830at 81.527 kb on - strand, within BACOVA_00830at 81.529 kb on + strand, within BACOVA_00830at 81.530 kb on - strand, within BACOVA_00830at 81.533 kb on + strand, within BACOVA_00830at 81.533 kb on + strand, within BACOVA_00830at 81.584 kb on - strand, within BACOVA_00830at 81.637 kb on + strand, within BACOVA_00830at 81.640 kb on - strand, within BACOVA_00830at 81.749 kb on - strand, within BACOVA_00830at 81.754 kb on + strand, within BACOVA_00830at 81.755 kb on - strand, within BACOVA_00830at 81.756 kb on + strand, within BACOVA_00830at 81.756 kb on + strand, within BACOVA_00830at 81.756 kb on + strand, within BACOVA_00830at 81.757 kb on - strand, within BACOVA_00830at 81.762 kb on + strand, within BACOVA_00830at 81.763 kb on - strand, within BACOVA_00830at 81.780 kb on + strand, within BACOVA_00830at 81.781 kb on - strand, within BACOVA_00830at 81.783 kb on + strand, within BACOVA_00830at 81.784 kb on - strand, within BACOVA_00830at 81.784 kb on - strand, within BACOVA_00830at 81.800 kb on + strand, within BACOVA_00830at 81.806 kb on - strand, within BACOVA_00830at 81.834 kb on + strand, within BACOVA_00830at 81.838 kb on + strand, within BACOVA_00830at 81.839 kb on - strand, within BACOVA_00830at 81.839 kb on - strand, within BACOVA_00830at 81.839 kb on - strand, within BACOVA_00830at 81.881 kb on + strand, within BACOVA_00830at 81.881 kb on + strand, within BACOVA_00830at 81.907 kb on + strand, within BACOVA_00830at 81.913 kb on + strand, within BACOVA_00830at 81.948 kb on - strand, within BACOVA_00830at 81.967 kb on + strand, within BACOVA_00830at 81.968 kb on - strand, within BACOVA_00830at 82.036 kb on + strand, within BACOVA_00830at 82.048 kb on + strand, within BACOVA_00830at 82.048 kb on + strand, within BACOVA_00830at 82.048 kb on + strand, within BACOVA_00830at 82.049 kb on - strand, within BACOVA_00830at 82.049 kb on - strand, within BACOVA_00830at 82.054 kb on + strand, within BACOVA_00830at 82.055 kb on - strand, within BACOVA_00830at 82.056 kb on + strand, within BACOVA_00830at 82.056 kb on + strand, within BACOVA_00830at 82.056 kb on + strand, within BACOVA_00830at 82.108 kb on + strand, within BACOVA_00830at 82.108 kb on + strand, within BACOVA_00830at 82.108 kb on + strand, within BACOVA_00830at 82.108 kb on + strand, within BACOVA_00830at 82.109 kb on - strand, within BACOVA_00830at 82.180 kb on + strand, within BACOVA_00830at 82.184 kb on - strand, within BACOVA_00830at 82.240 kb on - strand, within BACOVA_00830at 82.240 kb on - strand, within BACOVA_00830at 82.250 kb on + strand, within BACOVA_00830at 82.287 kb on - strand, within BACOVA_00830at 82.294 kb on + strand, within BACOVA_00830at 82.294 kb on + strand, within BACOVA_00830at 82.294 kb on + strand, within BACOVA_00830at 82.351 kb on - strand, within BACOVA_00830at 82.373 kb on - strand, within BACOVA_00830at 82.488 kb on - strandat 82.488 kb on - strandat 82.552 kb on + strandat 82.552 kb on + strandat 82.552 kb on + strandat 82.553 kb on - strandat 82.553 kb on - strandat 82.571 kb on + strandat 82.572 kb on - strandat 82.574 kb on + strandat 82.575 kb on - strandat 82.594 kb on + strandat 82.739 kb on + strand, within BACOVA_00831at 82.753 kb on + strand, within BACOVA_00831at 82.754 kb on - strand, within BACOVA_00831at 82.754 kb on - strand, within BACOVA_00831at 82.754 kb on - strand, within BACOVA_00831at 82.755 kb on + strand, within BACOVA_00831at 82.787 kb on - strand, within BACOVA_00831at 82.798 kb on + strand, within BACOVA_00831at 82.822 kb on + strand, within BACOVA_00831at 82.823 kb on - strand, within BACOVA_00831at 82.877 kb on - strand, within BACOVA_00831at 82.900 kb on + strand, within BACOVA_00831at 82.915 kb on + strand, within BACOVA_00831at 82.990 kb on + strand, within BACOVA_00831at 83.008 kb on - strand, within BACOVA_00831at 83.008 kb on - strand, within BACOVA_00831at 83.008 kb on - strand, within BACOVA_00831at 83.011 kb on - strand, within BACOVA_00831at 83.062 kb on - strand, within BACOVA_00831at 83.065 kb on + strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.080 kb on + strand, within BACOVA_00831at 83.081 kb on - strand, within BACOVA_00831at 83.082 kb on + strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.086 kb on + strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.146 kb on + strandat 83.148 kb on + strandat 83.189 kb on - strandat 83.213 kb on + strandat 83.241 kb on + strandat 83.241 kb on + strandat 83.242 kb on - strandat 83.242 kb on - strandat 83.242 kb on - strandat 83.246 kb on - strandat 83.276 kb on + strandat 83.281 kb on - strandat 83.344 kb on + strandat 83.352 kb on + strandat 83.389 kb on + strandat 83.416 kb on - strand, within BACOVA_00832at 83.489 kb on + strand, within BACOVA_00832at 83.489 kb on + strand, within BACOVA_00832at 83.490 kb on - strand, within BACOVA_00832at 83.490 kb on - strand, within BACOVA_00832at 83.509 kb on + strand, within BACOVA_00832at 83.510 kb on - strand, within BACOVA_00832at 83.510 kb on - strand, within BACOVA_00832at 83.510 kb on - strand, within BACOVA_00832at 83.538 kb on + strand, within BACOVA_00832at 83.538 kb on + strand, within BACOVA_00832at 83.539 kb on - strand, within BACOVA_00832at 83.539 kb on - strand, within BACOVA_00832

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
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80,123 + BACOVA_00829 0.24 -0.7
80,128 + BACOVA_00829 0.24 +0.5
80,186 + BACOVA_00829 0.29 -0.1
80,244 + BACOVA_00829 0.34 +0.1
80,244 + BACOVA_00829 0.34 -0.2
80,245 - BACOVA_00829 0.34 +0.1
80,245 - BACOVA_00829 0.34 -0.5
80,329 + BACOVA_00829 0.41 -1.1
80,382 - BACOVA_00829 0.45 -1.9
80,387 + BACOVA_00829 0.45 -0.8
80,387 + BACOVA_00829 0.45 -1.7
80,388 - BACOVA_00829 0.45 -0.2
80,388 - BACOVA_00829 0.45 +0.5
80,388 - BACOVA_00829 0.45 +0.2
80,410 + BACOVA_00829 0.47 -2.7
80,451 + BACOVA_00829 0.51 -1.5
80,512 + BACOVA_00829 0.56 -0.5
80,609 - BACOVA_00829 0.63 -0.1
80,620 + BACOVA_00829 0.64 -0.9
80,831 + BACOVA_00829 0.82 -0.1
80,831 + BACOVA_00829 0.82 -0.2
80,832 - BACOVA_00829 0.82 -1.0
80,854 - BACOVA_00829 0.83 +1.9
80,877 + BACOVA_00829 0.85 +0.7
80,877 + BACOVA_00829 0.85 +0.2
80,878 - BACOVA_00829 0.85 -0.4
80,922 + BACOVA_00829 0.89 +0.3
80,923 - BACOVA_00829 0.89 -0.1
80,931 - BACOVA_00829 0.90 +0.6
80,973 - +0.0
80,973 - +0.7
81,006 - -0.4
81,055 + +0.9
81,056 - +1.3
81,056 - -0.7
81,057 + +1.6
81,057 + +0.1
81,058 - -0.8
81,058 - -0.1
81,059 + -0.9
81,179 - -0.5
81,180 + +1.2
81,181 - +0.1
81,181 - +0.1
81,232 + BACOVA_00830 0.11 +1.3
81,233 - BACOVA_00830 0.11 -0.1
81,252 - BACOVA_00830 0.12 -2.0
81,445 + BACOVA_00830 0.25 -0.1
81,455 - BACOVA_00830 0.26 -0.1
81,519 + BACOVA_00830 0.30 +0.5
81,527 - BACOVA_00830 0.31 +0.2
81,529 + BACOVA_00830 0.31 -0.2
81,530 - BACOVA_00830 0.31 -2.1
81,533 + BACOVA_00830 0.31 +0.5
81,533 + BACOVA_00830 0.31 +0.5
81,584 - BACOVA_00830 0.35 -0.0
81,637 + BACOVA_00830 0.38 +0.3
81,640 - BACOVA_00830 0.39 -0.6
81,749 - BACOVA_00830 0.46 -0.3
81,754 + BACOVA_00830 0.46 +1.1
81,755 - BACOVA_00830 0.46 +1.5
81,756 + BACOVA_00830 0.46 +0.5
81,756 + BACOVA_00830 0.46 +0.7
81,756 + BACOVA_00830 0.46 +0.1
81,757 - BACOVA_00830 0.46 +0.0
81,762 + BACOVA_00830 0.47 +0.9
81,763 - BACOVA_00830 0.47 +0.2
81,780 + BACOVA_00830 0.48 +0.9
81,781 - BACOVA_00830 0.48 +0.7
81,783 + BACOVA_00830 0.48 +0.7
81,784 - BACOVA_00830 0.48 -0.7
81,784 - BACOVA_00830 0.48 -0.1
81,800 + BACOVA_00830 0.49 +0.7
81,806 - BACOVA_00830 0.50 +0.6
81,834 + BACOVA_00830 0.52 -0.3
81,838 + BACOVA_00830 0.52 +0.4
81,839 - BACOVA_00830 0.52 +0.9
81,839 - BACOVA_00830 0.52 +0.2
81,839 - BACOVA_00830 0.52 +1.0
81,881 + BACOVA_00830 0.55 +0.3
81,881 + BACOVA_00830 0.55 -0.7
81,907 + BACOVA_00830 0.57 +0.3
81,913 + BACOVA_00830 0.57 +0.7
81,948 - BACOVA_00830 0.59 +0.7
81,967 + BACOVA_00830 0.61 -0.3
81,968 - BACOVA_00830 0.61 +0.4
82,036 + BACOVA_00830 0.65 +0.2
82,048 + BACOVA_00830 0.66 -0.7
82,048 + BACOVA_00830 0.66 +0.3
82,048 + BACOVA_00830 0.66 +0.3
82,049 - BACOVA_00830 0.66 -0.7
82,049 - BACOVA_00830 0.66 +0.3
82,054 + BACOVA_00830 0.67 -0.1
82,055 - BACOVA_00830 0.67 -0.7
82,056 + BACOVA_00830 0.67 -0.3
82,056 + BACOVA_00830 0.67 +1.0
82,056 + BACOVA_00830 0.67 +0.3
82,108 + BACOVA_00830 0.70 +0.4
82,108 + BACOVA_00830 0.70 -0.3
82,108 + BACOVA_00830 0.70 -0.4
82,108 + BACOVA_00830 0.70 +0.5
82,109 - BACOVA_00830 0.70 +1.7
82,180 + BACOVA_00830 0.75 -2.3
82,184 - BACOVA_00830 0.75 +1.3
82,240 - BACOVA_00830 0.79 -0.3
82,240 - BACOVA_00830 0.79 -1.7
82,250 + BACOVA_00830 0.80 +0.1
82,287 - BACOVA_00830 0.82 +0.7
82,294 + BACOVA_00830 0.83 -0.3
82,294 + BACOVA_00830 0.83 +0.7
82,294 + BACOVA_00830 0.83 -0.8
82,351 - BACOVA_00830 0.87 -0.6
82,373 - BACOVA_00830 0.88 -0.6
82,488 - +0.7
82,488 - -1.0
82,552 + +0.5
82,552 + +1.7
82,552 + -0.3
82,553 - -0.0
82,553 - +0.1
82,571 + -0.6
82,572 - -0.6
82,574 + -0.7
82,575 - -1.1
82,594 + +0.9
82,739 + BACOVA_00831 0.25 -1.3
82,753 + BACOVA_00831 0.27 +0.7
82,754 - BACOVA_00831 0.28 -0.3
82,754 - BACOVA_00831 0.28 +0.7
82,754 - BACOVA_00831 0.28 +0.7
82,755 + BACOVA_00831 0.28 -0.5
82,787 - BACOVA_00831 0.33 +2.7
82,798 + BACOVA_00831 0.35 +1.1
82,822 + BACOVA_00831 0.39 -0.8
82,823 - BACOVA_00831 0.39 +0.1
82,877 - BACOVA_00831 0.48 +0.7
82,900 + BACOVA_00831 0.52 -1.1
82,915 + BACOVA_00831 0.54 -0.7
82,990 + BACOVA_00831 0.67 -2.3
83,008 - BACOVA_00831 0.70 +0.7
83,008 - BACOVA_00831 0.70 +0.2
83,008 - BACOVA_00831 0.70 -0.7
83,011 - BACOVA_00831 0.70 -0.2
83,062 - BACOVA_00831 0.79 +0.7
83,065 + BACOVA_00831 0.79 -0.1
83,066 - BACOVA_00831 0.80 -0.3
83,066 - BACOVA_00831 0.80 -0.2
83,066 - BACOVA_00831 0.80 -0.3
83,066 - BACOVA_00831 0.80 -0.1
83,080 + BACOVA_00831 0.82 -1.1
83,081 - BACOVA_00831 0.82 -1.3
83,082 + BACOVA_00831 0.82 -1.3
83,083 - BACOVA_00831 0.82 +0.4
83,083 - BACOVA_00831 0.82 -0.7
83,083 - BACOVA_00831 0.82 +0.5
83,083 - BACOVA_00831 0.82 +0.7
83,086 + BACOVA_00831 0.83 +0.3
83,087 - BACOVA_00831 0.83 +0.3
83,087 - BACOVA_00831 0.83 -1.1
83,087 - BACOVA_00831 0.83 -0.5
83,087 - BACOVA_00831 0.83 -0.6
83,146 + -0.7
83,148 + +0.1
83,189 - +0.4
83,213 + +0.6
83,241 + -0.7
83,241 + -0.1
83,242 - -0.0
83,242 - -0.5
83,242 - +1.3
83,246 - +1.1
83,276 + +0.7
83,281 - -0.3
83,344 + -0.6
83,352 + -0.7
83,389 + +0.3
83,416 - BACOVA_00832 0.13 +1.1
83,489 + BACOVA_00832 0.28 +0.7
83,489 + BACOVA_00832 0.28 +1.0
83,490 - BACOVA_00832 0.28 +0.4
83,490 - BACOVA_00832 0.28 -0.1
83,509 + BACOVA_00832 0.32 -1.8
83,510 - BACOVA_00832 0.32 +0.4
83,510 - BACOVA_00832 0.32 -0.0
83,510 - BACOVA_00832 0.32 +0.2
83,538 + BACOVA_00832 0.38 +1.1
83,538 + BACOVA_00832 0.38 -0.7
83,539 - BACOVA_00832 0.38 +0.3
83,539 - BACOVA_00832 0.38 +0.4

Or see this region's nucleotide sequence