Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00597

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00595 and BACOVA_00596 are separated by 137 nucleotidesBACOVA_00596 and BACOVA_00597 are separated by 198 nucleotidesBACOVA_00597 and BACOVA_00598 are separated by 169 nucleotidesBACOVA_00598 and BACOVA_00599 are separated by 30 nucleotides BACOVA_00595: BACOVA_00595 - hypothetical protein, at 31,378 to 31,941 _00595 BACOVA_00596: BACOVA_00596 - redoxin family protein, at 32,079 to 32,579 _00596 BACOVA_00597: BACOVA_00597 - hypothetical protein, at 32,778 to 33,662 _00597 BACOVA_00598: BACOVA_00598 - SNARE-like domain protein, at 33,832 to 34,476 _00598 BACOVA_00599: BACOVA_00599 - tetratricopeptide repeat protein, at 34,507 to 35,958 _00599 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2at 31.784 kb on - strand, within BACOVA_00595at 31.796 kb on - strand, within BACOVA_00595at 31.809 kb on + strand, within BACOVA_00595at 31.810 kb on - strand, within BACOVA_00595at 31.814 kb on - strand, within BACOVA_00595at 31.814 kb on - strand, within BACOVA_00595at 31.814 kb on - strand, within BACOVA_00595at 31.823 kb on + strand, within BACOVA_00595at 31.823 kb on + strand, within BACOVA_00595at 31.823 kb on + strand, within BACOVA_00595at 31.858 kb on + strand, within BACOVA_00595at 31.866 kb on + strand, within BACOVA_00595at 31.868 kb on + strand, within BACOVA_00595at 31.868 kb on + strand, within BACOVA_00595at 31.967 kb on + strandat 31.967 kb on + strandat 31.967 kb on + strandat 31.968 kb on - strandat 32.002 kb on + strandat 32.024 kb on + strandat 32.025 kb on - strandat 32.025 kb on - strandat 32.037 kb on - strandat 32.047 kb on + strandat 32.132 kb on - strand, within BACOVA_00596at 32.137 kb on + strand, within BACOVA_00596at 32.137 kb on + strand, within BACOVA_00596at 32.137 kb on + strand, within BACOVA_00596at 32.138 kb on - strand, within BACOVA_00596at 32.141 kb on + strand, within BACOVA_00596at 32.146 kb on + strand, within BACOVA_00596at 32.147 kb on - strand, within BACOVA_00596at 32.147 kb on - strand, within BACOVA_00596at 32.203 kb on + strand, within BACOVA_00596at 32.273 kb on + strand, within BACOVA_00596at 32.361 kb on - strand, within BACOVA_00596at 32.514 kb on - strand, within BACOVA_00596at 32.551 kb on - strandat 32.563 kb on + strandat 32.582 kb on + strandat 32.582 kb on + strandat 32.583 kb on - strandat 32.583 kb on - strandat 32.587 kb on + strandat 32.588 kb on - strandat 32.597 kb on + strandat 32.598 kb on - strandat 32.601 kb on + strandat 32.604 kb on + strandat 32.605 kb on - strandat 32.608 kb on + strandat 32.615 kb on + strandat 32.618 kb on + strandat 32.631 kb on + strandat 32.640 kb on - strandat 32.653 kb on - strandat 32.659 kb on + strandat 32.659 kb on + strandat 32.669 kb on - strandat 32.672 kb on + strandat 32.672 kb on + strandat 32.718 kb on - strandat 32.742 kb on + strandat 32.798 kb on - strandat 32.812 kb on + strandat 32.813 kb on - strandat 32.816 kb on + strandat 32.853 kb on - strandat 32.856 kb on - strandat 32.902 kb on + strand, within BACOVA_00597at 32.921 kb on + strand, within BACOVA_00597at 32.942 kb on + strand, within BACOVA_00597at 32.988 kb on - strand, within BACOVA_00597at 33.011 kb on + strand, within BACOVA_00597at 33.018 kb on - strand, within BACOVA_00597at 33.031 kb on - strand, within BACOVA_00597at 33.041 kb on + strand, within BACOVA_00597at 33.041 kb on + strand, within BACOVA_00597at 33.042 kb on - strand, within BACOVA_00597at 33.099 kb on + strand, within BACOVA_00597at 33.100 kb on - strand, within BACOVA_00597at 33.100 kb on - strand, within BACOVA_00597at 33.111 kb on - strand, within BACOVA_00597at 33.171 kb on + strand, within BACOVA_00597at 33.189 kb on - strand, within BACOVA_00597at 33.189 kb on - strand, within BACOVA_00597at 33.200 kb on + strand, within BACOVA_00597at 33.200 kb on + strand, within BACOVA_00597at 33.248 kb on + strand, within BACOVA_00597at 33.249 kb on - strand, within BACOVA_00597at 33.253 kb on - strand, within BACOVA_00597at 33.268 kb on + strand, within BACOVA_00597at 33.268 kb on + strand, within BACOVA_00597at 33.280 kb on + strand, within BACOVA_00597at 33.280 kb on + strand, within BACOVA_00597at 33.280 kb on + strand, within BACOVA_00597at 33.281 kb on - strand, within BACOVA_00597at 33.281 kb on - strand, within BACOVA_00597at 33.437 kb on - strand, within BACOVA_00597at 33.438 kb on + strand, within BACOVA_00597at 33.438 kb on + strand, within BACOVA_00597at 33.438 kb on + strand, within BACOVA_00597at 33.439 kb on - strand, within BACOVA_00597at 33.439 kb on - strand, within BACOVA_00597at 33.455 kb on - strand, within BACOVA_00597at 33.487 kb on + strand, within BACOVA_00597at 33.488 kb on - strand, within BACOVA_00597at 33.488 kb on - strand, within BACOVA_00597at 33.488 kb on - strand, within BACOVA_00597at 33.505 kb on + strand, within BACOVA_00597at 33.506 kb on - strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.522 kb on - strand, within BACOVA_00597at 33.548 kb on + strand, within BACOVA_00597at 33.552 kb on - strand, within BACOVA_00597at 33.565 kb on - strand, within BACOVA_00597at 33.599 kb on + strandat 33.599 kb on + strandat 33.600 kb on - strandat 33.632 kb on - strandat 33.632 kb on - strandat 33.632 kb on - strandat 33.641 kb on - strandat 33.672 kb on - strandat 33.676 kb on - strandat 33.704 kb on - strandat 33.708 kb on + strandat 33.747 kb on + strandat 33.747 kb on + strandat 33.753 kb on - strandat 33.773 kb on + strandat 33.774 kb on - strandat 33.826 kb on + strandat 33.827 kb on - strandat 33.856 kb on - strandat 33.921 kb on - strand, within BACOVA_00598at 33.966 kb on + strand, within BACOVA_00598at 33.998 kb on - strand, within BACOVA_00598at 34.001 kb on - strand, within BACOVA_00598at 34.012 kb on + strand, within BACOVA_00598at 34.012 kb on + strand, within BACOVA_00598at 34.014 kb on + strand, within BACOVA_00598at 34.033 kb on - strand, within BACOVA_00598at 34.035 kb on - strand, within BACOVA_00598at 34.168 kb on + strand, within BACOVA_00598at 34.168 kb on + strand, within BACOVA_00598at 34.223 kb on + strand, within BACOVA_00598at 34.259 kb on + strand, within BACOVA_00598at 34.260 kb on - strand, within BACOVA_00598at 34.288 kb on + strand, within BACOVA_00598at 34.290 kb on + strand, within BACOVA_00598at 34.290 kb on + strand, within BACOVA_00598at 34.291 kb on - strand, within BACOVA_00598at 34.317 kb on + strand, within BACOVA_00598at 34.318 kb on - strand, within BACOVA_00598at 34.427 kb on + strandat 34.452 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
remove
31,784 - BACOVA_00595 0.72 +0.2
31,796 - BACOVA_00595 0.74 +0.7
31,809 + BACOVA_00595 0.76 +0.4
31,810 - BACOVA_00595 0.77 +0.0
31,814 - BACOVA_00595 0.77 +0.3
31,814 - BACOVA_00595 0.77 -0.3
31,814 - BACOVA_00595 0.77 +0.3
31,823 + BACOVA_00595 0.79 -0.2
31,823 + BACOVA_00595 0.79 -0.3
31,823 + BACOVA_00595 0.79 -0.2
31,858 + BACOVA_00595 0.85 +0.5
31,866 + BACOVA_00595 0.87 -0.5
31,868 + BACOVA_00595 0.87 -0.7
31,868 + BACOVA_00595 0.87 +0.8
31,967 + -0.1
31,967 + +0.1
31,967 + -0.2
31,968 - -0.3
32,002 + +1.3
32,024 + +0.4
32,025 - -1.3
32,025 - +1.4
32,037 - -0.6
32,047 + -1.3
32,132 - BACOVA_00596 0.11 -0.6
32,137 + BACOVA_00596 0.12 -0.7
32,137 + BACOVA_00596 0.12 -0.5
32,137 + BACOVA_00596 0.12 +1.7
32,138 - BACOVA_00596 0.12 +0.7
32,141 + BACOVA_00596 0.12 +0.3
32,146 + BACOVA_00596 0.13 -0.6
32,147 - BACOVA_00596 0.14 +1.2
32,147 - BACOVA_00596 0.14 +0.7
32,203 + BACOVA_00596 0.25 +1.7
32,273 + BACOVA_00596 0.39 +0.7
32,361 - BACOVA_00596 0.56 -0.5
32,514 - BACOVA_00596 0.87 -1.6
32,551 - -1.0
32,563 + -1.2
32,582 + -1.0
32,582 + +0.7
32,583 - -0.2
32,583 - -0.7
32,587 + -0.7
32,588 - -0.6
32,597 + -1.4
32,598 - +0.4
32,601 + -0.2
32,604 + +0.7
32,605 - +0.9
32,608 + -0.5
32,615 + -0.6
32,618 + -0.4
32,631 + -0.6
32,640 - +1.1
32,653 - +0.1
32,659 + +0.1
32,659 + -0.4
32,669 - -0.8
32,672 + -0.4
32,672 + +0.4
32,718 - +2.4
32,742 + -0.5
32,798 - +0.2
32,812 + +0.2
32,813 - +0.8
32,816 + +0.1
32,853 - -0.9
32,856 - +0.7
32,902 + BACOVA_00597 0.14 -1.2
32,921 + BACOVA_00597 0.16 +0.8
32,942 + BACOVA_00597 0.19 -1.5
32,988 - BACOVA_00597 0.24 -0.3
33,011 + BACOVA_00597 0.26 +0.3
33,018 - BACOVA_00597 0.27 +2.3
33,031 - BACOVA_00597 0.29 +0.7
33,041 + BACOVA_00597 0.30 +1.3
33,041 + BACOVA_00597 0.30 -0.6
33,042 - BACOVA_00597 0.30 +0.7
33,099 + BACOVA_00597 0.36 -0.1
33,100 - BACOVA_00597 0.36 -0.2
33,100 - BACOVA_00597 0.36 -0.2
33,111 - BACOVA_00597 0.38 +0.7
33,171 + BACOVA_00597 0.44 +0.2
33,189 - BACOVA_00597 0.46 -0.3
33,189 - BACOVA_00597 0.46 -0.7
33,200 + BACOVA_00597 0.48 +0.4
33,200 + BACOVA_00597 0.48 +0.5
33,248 + BACOVA_00597 0.53 +0.5
33,249 - BACOVA_00597 0.53 -1.3
33,253 - BACOVA_00597 0.54 -1.0
33,268 + BACOVA_00597 0.55 +0.2
33,268 + BACOVA_00597 0.55 +0.9
33,280 + BACOVA_00597 0.57 -0.1
33,280 + BACOVA_00597 0.57 +0.7
33,280 + BACOVA_00597 0.57 -0.5
33,281 - BACOVA_00597 0.57 -0.6
33,281 - BACOVA_00597 0.57 +0.1
33,437 - BACOVA_00597 0.74 +0.1
33,438 + BACOVA_00597 0.75 -1.5
33,438 + BACOVA_00597 0.75 -0.4
33,438 + BACOVA_00597 0.75 +0.7
33,439 - BACOVA_00597 0.75 +0.8
33,439 - BACOVA_00597 0.75 -0.7
33,455 - BACOVA_00597 0.76 -0.9
33,487 + BACOVA_00597 0.80 -1.3
33,488 - BACOVA_00597 0.80 -0.5
33,488 - BACOVA_00597 0.80 -0.1
33,488 - BACOVA_00597 0.80 +0.0
33,505 + BACOVA_00597 0.82 -0.3
33,506 - BACOVA_00597 0.82 -0.9
33,511 + BACOVA_00597 0.83 -0.8
33,511 + BACOVA_00597 0.83 -0.3
33,511 + BACOVA_00597 0.83 +1.7
33,511 + BACOVA_00597 0.83 +0.4
33,522 - BACOVA_00597 0.84 -0.0
33,548 + BACOVA_00597 0.87 -1.0
33,552 - BACOVA_00597 0.87 +2.0
33,565 - BACOVA_00597 0.89 +0.1
33,599 + -0.6
33,599 + +0.1
33,600 - +0.3
33,632 - -0.3
33,632 - +1.5
33,632 - -0.3
33,641 - -1.9
33,672 - +1.9
33,676 - -1.0
33,704 - +0.2
33,708 + +0.2
33,747 + -0.5
33,747 + -2.1
33,753 - +0.7
33,773 + -0.1
33,774 - -0.6
33,826 + +1.2
33,827 - -0.1
33,856 - -0.9
33,921 - BACOVA_00598 0.14 -1.6
33,966 + BACOVA_00598 0.21 +1.1
33,998 - BACOVA_00598 0.26 -1.3
34,001 - BACOVA_00598 0.26 -2.1
34,012 + BACOVA_00598 0.28 -0.3
34,012 + BACOVA_00598 0.28 -1.6
34,014 + BACOVA_00598 0.28 -0.9
34,033 - BACOVA_00598 0.31 -1.6
34,035 - BACOVA_00598 0.31 -0.6
34,168 + BACOVA_00598 0.52 -1.6
34,168 + BACOVA_00598 0.52 -0.3
34,223 + BACOVA_00598 0.61 -0.3
34,259 + BACOVA_00598 0.66 -0.9
34,260 - BACOVA_00598 0.66 -0.3
34,288 + BACOVA_00598 0.71 -0.7
34,290 + BACOVA_00598 0.71 -0.3
34,290 + BACOVA_00598 0.71 -0.3
34,291 - BACOVA_00598 0.71 -0.9
34,317 + BACOVA_00598 0.75 +0.3
34,318 - BACOVA_00598 0.75 -1.1
34,427 + -0.3
34,452 + +0.7

Or see this region's nucleotide sequence