Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00239 and BACOVA_00240 are separated by 83 nucleotides BACOVA_00240 and BACOVA_00241 are separated by 230 nucleotides BACOVA_00241 and BACOVA_00242 are separated by 8 nucleotides
BACOVA_00239: BACOVA_00239 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 11,464 to 15,468
_00239
BACOVA_00240: BACOVA_00240 - hypothetical protein, at 15,552 to 15,662
_00240
BACOVA_00241: BACOVA_00241 - hypothetical protein, at 15,893 to 16,042
_00241
BACOVA_00242: BACOVA_00242 - TonB-linked outer membrane protein, SusC/RagA family, at 16,051 to 19,170
_00242
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 14.940 kb on + strand, within BACOVA_00239 at 14.940 kb on + strand, within BACOVA_00239 at 14.940 kb on + strand, within BACOVA_00239 at 14.941 kb on - strand, within BACOVA_00239 at 14.941 kb on - strand, within BACOVA_00239 at 14.946 kb on + strand, within BACOVA_00239 at 14.953 kb on - strand, within BACOVA_00239 at 14.953 kb on - strand, within BACOVA_00239 at 14.958 kb on + strand, within BACOVA_00239 at 15.018 kb on + strand, within BACOVA_00239 at 15.048 kb on - strand, within BACOVA_00239 at 15.083 kb on - strand at 15.106 kb on + strand at 15.114 kb on + strand at 15.115 kb on - strand at 15.155 kb on + strand at 15.172 kb on - strand at 15.172 kb on - strand at 15.196 kb on - strand at 15.204 kb on + strand at 15.208 kb on - strand at 15.208 kb on - strand at 15.240 kb on + strand at 15.240 kb on + strand at 15.247 kb on - strand at 15.303 kb on - strand at 15.303 kb on - strand at 15.323 kb on + strand at 15.338 kb on - strand at 15.338 kb on - strand at 15.339 kb on + strand at 15.340 kb on - strand at 15.414 kb on + strand at 15.425 kb on - strand at 15.450 kb on - strand at 15.456 kb on + strand at 15.459 kb on - strand at 15.510 kb on + strand at 15.549 kb on - strand at 15.549 kb on - strand at 15.552 kb on - strand at 15.566 kb on + strand, within BACOVA_00240 at 15.575 kb on - strand, within BACOVA_00240 at 15.579 kb on - strand, within BACOVA_00240 at 15.581 kb on - strand, within BACOVA_00240 at 15.590 kb on + strand, within BACOVA_00240 at 15.617 kb on - strand, within BACOVA_00240 at 15.635 kb on - strand, within BACOVA_00240 at 15.659 kb on - strand at 15.661 kb on - strand at 15.684 kb on + strand at 15.684 kb on + strand at 15.684 kb on + strand at 15.685 kb on - strand at 15.685 kb on - strand at 15.710 kb on + strand at 15.716 kb on + strand at 15.717 kb on - strand at 15.736 kb on + strand at 15.736 kb on + strand at 15.744 kb on + strand at 15.744 kb on + strand at 15.745 kb on - strand at 15.748 kb on - strand at 15.750 kb on - strand at 15.772 kb on + strand at 15.806 kb on + strand at 15.806 kb on + strand at 15.806 kb on + strand at 15.806 kb on + strand at 15.807 kb on - strand at 15.807 kb on - strand at 15.807 kb on - strand at 15.822 kb on + strand at 15.833 kb on + strand at 15.865 kb on - strand at 15.889 kb on - strand at 15.920 kb on - strand, within BACOVA_00241 at 15.933 kb on - strand, within BACOVA_00241 at 15.933 kb on - strand, within BACOVA_00241 at 15.955 kb on - strand, within BACOVA_00241 at 15.970 kb on - strand, within BACOVA_00241 at 15.991 kb on + strand, within BACOVA_00241 at 15.992 kb on - strand, within BACOVA_00241 at 16.009 kb on - strand, within BACOVA_00241 at 16.030 kb on - strand at 16.036 kb on - strand at 16.057 kb on + strand at 16.058 kb on - strand at 16.068 kb on + strand at 16.104 kb on + strand at 16.109 kb on + strand at 16.109 kb on + strand at 16.110 kb on - strand at 16.119 kb on - strand at 16.119 kb on - strand at 16.130 kb on + strand at 16.130 kb on + strand at 16.130 kb on + strand at 16.131 kb on - strand at 16.131 kb on - strand at 16.131 kb on - strand at 16.135 kb on - strand at 16.243 kb on - strand at 16.258 kb on - strand at 16.308 kb on + strand at 16.329 kb on - strand at 16.338 kb on - strand at 16.349 kb on + strand at 16.350 kb on - strand at 16.353 kb on + strand at 16.359 kb on + strand at 16.359 kb on + strand at 16.409 kb on + strand, within BACOVA_00242 at 16.450 kb on - strand, within BACOVA_00242 at 16.544 kb on - strand, within BACOVA_00242 at 16.545 kb on + strand, within BACOVA_00242 at 16.546 kb on - strand, within BACOVA_00242 at 16.614 kb on + strand, within BACOVA_00242 at 16.615 kb on - strand, within BACOVA_00242 at 16.635 kb on - strand, within BACOVA_00242 at 16.687 kb on - strand, within BACOVA_00242 at 16.714 kb on - strand, within BACOVA_00242 at 16.714 kb on - strand, within BACOVA_00242 at 16.723 kb on + strand, within BACOVA_00242 at 16.755 kb on + strand, within BACOVA_00242 at 16.756 kb on - strand, within BACOVA_00242 at 16.788 kb on + strand, within BACOVA_00242 at 16.789 kb on - strand, within BACOVA_00242 at 16.789 kb on - strand, within BACOVA_00242 at 16.813 kb on - strand, within BACOVA_00242 at 16.813 kb on - strand, within BACOVA_00242 at 16.813 kb on - strand, within BACOVA_00242 at 16.816 kb on - strand, within BACOVA_00242 at 16.846 kb on + strand, within BACOVA_00242 at 16.847 kb on - strand, within BACOVA_00242 at 16.855 kb on + strand, within BACOVA_00242 at 16.855 kb on + strand, within BACOVA_00242 at 16.856 kb on - strand, within BACOVA_00242 at 16.866 kb on + strand, within BACOVA_00242 at 16.928 kb on - strand, within BACOVA_00242 at 16.929 kb on + strand, within BACOVA_00242 at 16.941 kb on + strand, within BACOVA_00242 at 16.944 kb on + strand, within BACOVA_00242 at 16.944 kb on + strand, within BACOVA_00242 at 16.954 kb on + strand, within BACOVA_00242 at 16.954 kb on + strand, within BACOVA_00242 at 16.955 kb on - strand, within BACOVA_00242 at 16.995 kb on + strand, within BACOVA_00242 at 16.996 kb on - strand, within BACOVA_00242 at 16.996 kb on - strand, within BACOVA_00242 at 17.001 kb on - strand, within BACOVA_00242 at 17.001 kb on - strand, within BACOVA_00242 at 17.001 kb on - strand, within BACOVA_00242 at 17.030 kb on - strand, within BACOVA_00242 at 17.042 kb on - strand, within BACOVA_00242
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C) remove 14,940 + BACOVA_00239 0.87 +0.9 14,940 + BACOVA_00239 0.87 -1.3 14,940 + BACOVA_00239 0.87 +1.2 14,941 - BACOVA_00239 0.87 +0.1 14,941 - BACOVA_00239 0.87 -0.4 14,946 + BACOVA_00239 0.87 -1.3 14,953 - BACOVA_00239 0.87 +0.0 14,953 - BACOVA_00239 0.87 -0.0 14,958 + BACOVA_00239 0.87 +0.5 15,018 + BACOVA_00239 0.89 +0.7 15,048 - BACOVA_00239 0.89 +0.0 15,083 - -0.4 15,106 + +0.3 15,114 + -0.0 15,115 - -0.1 15,155 + +0.3 15,172 - +1.3 15,172 - -0.3 15,196 - +0.2 15,204 + -0.2 15,208 - -0.3 15,208 - -0.4 15,240 + -0.4 15,240 + -0.3 15,247 - +0.2 15,303 - -1.0 15,303 - +1.1 15,323 + -0.2 15,338 - +0.3 15,338 - -0.3 15,339 + +0.7 15,340 - +0.5 15,414 + -0.7 15,425 - -0.1 15,450 - -0.3 15,456 + +0.2 15,459 - +0.9 15,510 + +1.2 15,549 - -1.6 15,549 - +0.2 15,552 - +0.5 15,566 + BACOVA_00240 0.13 -0.0 15,575 - BACOVA_00240 0.21 +0.7 15,579 - BACOVA_00240 0.24 -0.8 15,581 - BACOVA_00240 0.26 +0.4 15,590 + BACOVA_00240 0.34 +0.1 15,617 - BACOVA_00240 0.59 -0.6 15,635 - BACOVA_00240 0.75 -0.8 15,659 - -0.1 15,661 - -0.1 15,684 + -0.3 15,684 + +0.3 15,684 + +0.7 15,685 - +0.1 15,685 - -0.2 15,710 + -0.6 15,716 + -0.6 15,717 - +0.2 15,736 + +0.1 15,736 + -0.4 15,744 + +0.2 15,744 + -0.2 15,745 - +0.1 15,748 - -0.2 15,750 - -0.9 15,772 + +0.4 15,806 + -1.1 15,806 + +1.2 15,806 + -0.3 15,806 + -1.6 15,807 - +0.7 15,807 - -0.2 15,807 - -0.5 15,822 + +0.2 15,833 + +0.3 15,865 - +0.7 15,889 - -2.4 15,920 - BACOVA_00241 0.18 -0.6 15,933 - BACOVA_00241 0.27 +0.3 15,933 - BACOVA_00241 0.27 -0.3 15,955 - BACOVA_00241 0.41 -0.5 15,970 - BACOVA_00241 0.51 -1.5 15,991 + BACOVA_00241 0.65 +1.4 15,992 - BACOVA_00241 0.66 -0.7 16,009 - BACOVA_00241 0.77 +0.3 16,030 - +1.0 16,036 - -0.6 16,057 + +0.0 16,058 - -0.7 16,068 + -0.4 16,104 + -0.4 16,109 + +1.1 16,109 + -0.1 16,110 - -0.4 16,119 - -1.0 16,119 - -1.9 16,130 + -0.2 16,130 + +0.6 16,130 + -0.6 16,131 - +0.6 16,131 - +0.6 16,131 - -0.2 16,135 - -0.3 16,243 - -0.6 16,258 - +0.7 16,308 + +0.3 16,329 - -1.3 16,338 - -0.9 16,349 + +0.1 16,350 - -0.5 16,353 + +0.1 16,359 + -1.2 16,359 + -0.4 16,409 + BACOVA_00242 0.11 -0.4 16,450 - BACOVA_00242 0.13 +0.2 16,544 - BACOVA_00242 0.16 -0.2 16,545 + BACOVA_00242 0.16 +1.0 16,546 - BACOVA_00242 0.16 +0.5 16,614 + BACOVA_00242 0.18 +0.3 16,615 - BACOVA_00242 0.18 -0.2 16,635 - BACOVA_00242 0.19 -0.5 16,687 - BACOVA_00242 0.20 -0.9 16,714 - BACOVA_00242 0.21 -0.3 16,714 - BACOVA_00242 0.21 -0.6 16,723 + BACOVA_00242 0.22 +1.2 16,755 + BACOVA_00242 0.23 +0.9 16,756 - BACOVA_00242 0.23 -0.9 16,788 + BACOVA_00242 0.24 +0.4 16,789 - BACOVA_00242 0.24 -0.1 16,789 - BACOVA_00242 0.24 -2.0 16,813 - BACOVA_00242 0.24 +0.3 16,813 - BACOVA_00242 0.24 -0.9 16,813 - BACOVA_00242 0.24 +0.1 16,816 - BACOVA_00242 0.25 -0.3 16,846 + BACOVA_00242 0.25 +0.1 16,847 - BACOVA_00242 0.26 -0.9 16,855 + BACOVA_00242 0.26 +0.5 16,855 + BACOVA_00242 0.26 +0.4 16,856 - BACOVA_00242 0.26 +0.5 16,866 + BACOVA_00242 0.26 -0.6 16,928 - BACOVA_00242 0.28 +0.4 16,929 + BACOVA_00242 0.28 +0.4 16,941 + BACOVA_00242 0.29 +0.7 16,944 + BACOVA_00242 0.29 -1.3 16,944 + BACOVA_00242 0.29 +0.7 16,954 + BACOVA_00242 0.29 +1.3 16,954 + BACOVA_00242 0.29 +0.7 16,955 - BACOVA_00242 0.29 -0.7 16,995 + BACOVA_00242 0.30 +0.0 16,996 - BACOVA_00242 0.30 +1.0 16,996 - BACOVA_00242 0.30 -0.8 17,001 - BACOVA_00242 0.30 +0.8 17,001 - BACOVA_00242 0.30 +0.2 17,001 - BACOVA_00242 0.30 +1.1 17,030 - BACOVA_00242 0.31 -0.7 17,042 - BACOVA_00242 0.32 +0.4
Or see this region's nucleotide sequence