Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04035

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04032 and BACOVA_04033 are separated by 63 nucleotidesBACOVA_04033 and BACOVA_04034 are separated by 63 nucleotidesBACOVA_04034 and BACOVA_04035 are separated by 96 nucleotidesBACOVA_04035 and BACOVA_04036 are separated by 79 nucleotides BACOVA_04032: BACOVA_04032 - hypothetical protein, at 364,469 to 365,716 _04032 BACOVA_04033: BACOVA_04033 - hypothetical protein, at 365,780 to 365,908 _04033 BACOVA_04034: BACOVA_04034 - putative YigZ family protein, at 365,972 to 366,589 _04034 BACOVA_04035: BACOVA_04035 - hypothetical protein, at 366,686 to 367,435 _04035 BACOVA_04036: BACOVA_04036 - HpaII restriction endonuclease, at 367,515 to 368,600 _04036 Position (kb) 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2 3at 365.702 kb on - strandat 365.704 kb on + strandat 365.709 kb on + strandat 365.768 kb on + strandat 365.769 kb on - strandat 365.810 kb on + strand, within BACOVA_04033at 365.811 kb on - strand, within BACOVA_04033at 365.841 kb on + strand, within BACOVA_04033at 365.841 kb on + strand, within BACOVA_04033at 365.842 kb on - strand, within BACOVA_04033at 365.844 kb on - strand, within BACOVA_04033at 365.844 kb on - strand, within BACOVA_04033at 365.919 kb on - strandat 365.919 kb on - strandat 365.987 kb on - strandat 365.990 kb on + strandat 365.991 kb on - strandat 365.991 kb on - strandat 365.992 kb on + strandat 366.020 kb on - strandat 366.024 kb on - strandat 366.024 kb on - strandat 366.053 kb on - strand, within BACOVA_04034at 366.084 kb on + strand, within BACOVA_04034at 366.104 kb on + strand, within BACOVA_04034at 366.117 kb on - strand, within BACOVA_04034at 366.117 kb on - strand, within BACOVA_04034at 366.120 kb on - strand, within BACOVA_04034at 366.136 kb on - strand, within BACOVA_04034at 366.136 kb on - strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.147 kb on - strand, within BACOVA_04034at 366.148 kb on + strand, within BACOVA_04034at 366.149 kb on - strand, within BACOVA_04034at 366.221 kb on - strand, within BACOVA_04034at 366.258 kb on + strand, within BACOVA_04034at 366.259 kb on - strand, within BACOVA_04034at 366.365 kb on - strand, within BACOVA_04034at 366.415 kb on + strand, within BACOVA_04034at 366.415 kb on + strand, within BACOVA_04034at 366.473 kb on + strand, within BACOVA_04034at 366.487 kb on + strand, within BACOVA_04034at 366.523 kb on + strand, within BACOVA_04034at 366.524 kb on - strand, within BACOVA_04034at 366.580 kb on + strandat 366.588 kb on - strandat 366.591 kb on + strandat 366.592 kb on - strandat 366.600 kb on - strandat 366.605 kb on + strandat 366.609 kb on - strandat 366.611 kb on + strandat 366.636 kb on + strandat 366.681 kb on + strandat 366.739 kb on + strandat 366.740 kb on - strandat 366.832 kb on + strand, within BACOVA_04035at 366.851 kb on - strand, within BACOVA_04035at 366.860 kb on - strand, within BACOVA_04035at 366.893 kb on + strand, within BACOVA_04035at 366.893 kb on + strand, within BACOVA_04035at 366.965 kb on + strand, within BACOVA_04035at 366.966 kb on - strand, within BACOVA_04035at 366.996 kb on - strand, within BACOVA_04035at 367.012 kb on - strand, within BACOVA_04035at 367.060 kb on + strand, within BACOVA_04035at 367.061 kb on - strand, within BACOVA_04035at 367.087 kb on - strand, within BACOVA_04035at 367.087 kb on - strand, within BACOVA_04035at 367.097 kb on + strand, within BACOVA_04035at 367.099 kb on + strand, within BACOVA_04035at 367.169 kb on - strand, within BACOVA_04035at 367.169 kb on - strand, within BACOVA_04035at 367.235 kb on + strand, within BACOVA_04035at 367.269 kb on - strand, within BACOVA_04035at 367.303 kb on - strand, within BACOVA_04035at 367.347 kb on + strand, within BACOVA_04035at 367.381 kb on + strandat 367.382 kb on - strandat 367.383 kb on + strandat 367.384 kb on - strandat 367.384 kb on - strandat 367.384 kb on - strandat 367.413 kb on + strandat 367.446 kb on + strandat 367.447 kb on - strandat 367.450 kb on + strandat 367.466 kb on + strandat 367.477 kb on + strandat 367.492 kb on - strandat 367.513 kb on - strandat 367.595 kb on - strandat 367.678 kb on - strand, within BACOVA_04036at 367.681 kb on - strand, within BACOVA_04036at 367.681 kb on - strand, within BACOVA_04036at 367.683 kb on - strand, within BACOVA_04036at 367.683 kb on - strand, within BACOVA_04036at 367.690 kb on + strand, within BACOVA_04036at 367.695 kb on - strand, within BACOVA_04036at 367.695 kb on - strand, within BACOVA_04036at 367.703 kb on + strand, within BACOVA_04036at 367.705 kb on + strand, within BACOVA_04036at 367.706 kb on - strand, within BACOVA_04036at 367.752 kb on - strand, within BACOVA_04036at 367.757 kb on - strand, within BACOVA_04036at 367.823 kb on - strand, within BACOVA_04036at 368.118 kb on - strand, within BACOVA_04036at 368.121 kb on + strand, within BACOVA_04036at 368.132 kb on - strand, within BACOVA_04036at 368.225 kb on + strand, within BACOVA_04036at 368.225 kb on + strand, within BACOVA_04036at 368.225 kb on + strand, within BACOVA_04036at 368.225 kb on + strand, within BACOVA_04036at 368.237 kb on + strand, within BACOVA_04036at 368.237 kb on + strand, within BACOVA_04036at 368.294 kb on - strand, within BACOVA_04036at 368.306 kb on + strand, within BACOVA_04036at 368.306 kb on + strand, within BACOVA_04036at 368.307 kb on - strand, within BACOVA_04036at 368.307 kb on - strand, within BACOVA_04036at 368.313 kb on + strand, within BACOVA_04036at 368.376 kb on + strand, within BACOVA_04036at 368.411 kb on - strand, within BACOVA_04036

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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365,702 - +0.8
365,704 + +0.2
365,709 + +0.7
365,768 + -0.2
365,769 - -1.6
365,810 + BACOVA_04033 0.23 +1.5
365,811 - BACOVA_04033 0.24 +1.3
365,841 + BACOVA_04033 0.47 +0.4
365,841 + BACOVA_04033 0.47 +1.0
365,842 - BACOVA_04033 0.48 +3.1
365,844 - BACOVA_04033 0.50 +1.6
365,844 - BACOVA_04033 0.50 +1.0
365,919 - +1.4
365,919 - -0.9
365,987 - +0.3
365,990 + +0.8
365,991 - +0.5
365,991 - -1.0
365,992 + +2.4
366,020 - -1.5
366,024 - +0.9
366,024 - +0.1
366,053 - BACOVA_04034 0.13 -0.8
366,084 + BACOVA_04034 0.18 +0.8
366,104 + BACOVA_04034 0.21 +0.8
366,117 - BACOVA_04034 0.23 +0.1
366,117 - BACOVA_04034 0.23 +0.2
366,120 - BACOVA_04034 0.24 +0.2
366,136 - BACOVA_04034 0.27 -1.2
366,136 - BACOVA_04034 0.27 -0.9
366,146 + BACOVA_04034 0.28 -0.5
366,146 + BACOVA_04034 0.28 -1.7
366,146 + BACOVA_04034 0.28 +0.0
366,146 + BACOVA_04034 0.28 +1.8
366,147 - BACOVA_04034 0.28 -1.0
366,148 + BACOVA_04034 0.28 -1.5
366,149 - BACOVA_04034 0.29 -0.8
366,221 - BACOVA_04034 0.40 -0.2
366,258 + BACOVA_04034 0.46 -1.0
366,259 - BACOVA_04034 0.46 -0.6
366,365 - BACOVA_04034 0.64 -0.0
366,415 + BACOVA_04034 0.72 -0.8
366,415 + BACOVA_04034 0.72 +0.5
366,473 + BACOVA_04034 0.81 +0.4
366,487 + BACOVA_04034 0.83 -0.8
366,523 + BACOVA_04034 0.89 -1.2
366,524 - BACOVA_04034 0.89 -0.3
366,580 + -0.6
366,588 - -0.5
366,591 + +0.5
366,592 - -0.9
366,600 - +0.8
366,605 + -0.8
366,609 - -1.3
366,611 + -0.2
366,636 + +0.0
366,681 + -1.0
366,739 + +1.3
366,740 - -0.3
366,832 + BACOVA_04035 0.19 +0.0
366,851 - BACOVA_04035 0.22 +0.8
366,860 - BACOVA_04035 0.23 +0.0
366,893 + BACOVA_04035 0.28 +1.4
366,893 + BACOVA_04035 0.28 -1.2
366,965 + BACOVA_04035 0.37 +0.8
366,966 - BACOVA_04035 0.37 +0.1
366,996 - BACOVA_04035 0.41 -0.2
367,012 - BACOVA_04035 0.43 +0.0
367,060 + BACOVA_04035 0.50 -2.5
367,061 - BACOVA_04035 0.50 -0.4
367,087 - BACOVA_04035 0.53 -0.0
367,087 - BACOVA_04035 0.53 +0.0
367,097 + BACOVA_04035 0.55 -1.4
367,099 + BACOVA_04035 0.55 -1.0
367,169 - BACOVA_04035 0.64 -0.1
367,169 - BACOVA_04035 0.64 -0.8
367,235 + BACOVA_04035 0.73 +0.4
367,269 - BACOVA_04035 0.78 +1.2
367,303 - BACOVA_04035 0.82 +1.8
367,347 + BACOVA_04035 0.88 -0.6
367,381 + +0.4
367,382 - -1.5
367,383 + +1.5
367,384 - -0.0
367,384 - +0.4
367,384 - +1.3
367,413 + +0.3
367,446 + -0.2
367,447 - +0.9
367,450 + -0.0
367,466 + -1.5
367,477 + -0.2
367,492 - -0.4
367,513 - +0.5
367,595 - +1.1
367,678 - BACOVA_04036 0.15 -0.0
367,681 - BACOVA_04036 0.15 -0.8
367,681 - BACOVA_04036 0.15 +0.1
367,683 - BACOVA_04036 0.15 -0.5
367,683 - BACOVA_04036 0.15 +0.8
367,690 + BACOVA_04036 0.16 -1.2
367,695 - BACOVA_04036 0.17 +0.2
367,695 - BACOVA_04036 0.17 +0.4
367,703 + BACOVA_04036 0.17 -0.9
367,705 + BACOVA_04036 0.17 -1.7
367,706 - BACOVA_04036 0.18 -1.4
367,752 - BACOVA_04036 0.22 +0.9
367,757 - BACOVA_04036 0.22 +0.1
367,823 - BACOVA_04036 0.28 -0.1
368,118 - BACOVA_04036 0.56 +0.9
368,121 + BACOVA_04036 0.56 -1.4
368,132 - BACOVA_04036 0.57 +0.3
368,225 + BACOVA_04036 0.65 -1.1
368,225 + BACOVA_04036 0.65 +0.2
368,225 + BACOVA_04036 0.65 +0.4
368,225 + BACOVA_04036 0.65 -1.8
368,237 + BACOVA_04036 0.66 -0.4
368,237 + BACOVA_04036 0.66 +0.8
368,294 - BACOVA_04036 0.72 +1.8
368,306 + BACOVA_04036 0.73 +1.4
368,306 + BACOVA_04036 0.73 +0.0
368,307 - BACOVA_04036 0.73 -0.1
368,307 - BACOVA_04036 0.73 +0.3
368,313 + BACOVA_04036 0.73 -1.5
368,376 + BACOVA_04036 0.79 +0.8
368,411 - BACOVA_04036 0.83 -0.2

Or see this region's nucleotide sequence