Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03984

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03983 and BACOVA_03984 are separated by 177 nucleotidesBACOVA_03984 and BACOVA_03985 are separated by 72 nucleotidesBACOVA_03985 and BACOVA_03986 are separated by 120 nucleotides BACOVA_03983: BACOVA_03983 - GDSL-like protein, at 312,464 to 313,849 _03983 BACOVA_03984: BACOVA_03984 - PAS domain S-box protein, at 314,027 to 315,913 _03984 BACOVA_03985: BACOVA_03985 - tRNA-Lys, at 315,986 to 316,058 _03985 BACOVA_03986: BACOVA_03986 - ATP-binding cassette protein, ChvD family, at 316,179 to 317,870 _03986 Position (kb) 314 315 316Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 313.063 kb on + strand, within BACOVA_03983at 313.064 kb on - strand, within BACOVA_03983at 313.064 kb on - strand, within BACOVA_03983at 313.070 kb on + strand, within BACOVA_03983at 313.072 kb on + strand, within BACOVA_03983at 313.072 kb on + strand, within BACOVA_03983at 313.073 kb on - strand, within BACOVA_03983at 313.085 kb on - strand, within BACOVA_03983at 313.085 kb on - strand, within BACOVA_03983at 313.160 kb on - strand, within BACOVA_03983at 313.163 kb on + strand, within BACOVA_03983at 313.249 kb on + strand, within BACOVA_03983at 313.261 kb on - strand, within BACOVA_03983at 313.268 kb on - strand, within BACOVA_03983at 313.300 kb on + strand, within BACOVA_03983at 313.301 kb on - strand, within BACOVA_03983at 313.303 kb on + strand, within BACOVA_03983at 313.304 kb on - strand, within BACOVA_03983at 313.307 kb on - strand, within BACOVA_03983at 313.307 kb on - strand, within BACOVA_03983at 313.307 kb on - strand, within BACOVA_03983at 313.310 kb on + strand, within BACOVA_03983at 313.310 kb on + strand, within BACOVA_03983at 313.311 kb on - strand, within BACOVA_03983at 313.366 kb on + strand, within BACOVA_03983at 313.444 kb on + strand, within BACOVA_03983at 313.487 kb on - strand, within BACOVA_03983at 313.489 kb on + strand, within BACOVA_03983at 313.511 kb on - strand, within BACOVA_03983at 313.617 kb on - strand, within BACOVA_03983at 313.640 kb on + strand, within BACOVA_03983at 313.640 kb on + strand, within BACOVA_03983at 313.655 kb on - strand, within BACOVA_03983at 313.657 kb on + strand, within BACOVA_03983at 313.720 kb on + strandat 313.950 kb on - strandat 313.954 kb on + strandat 313.986 kb on + strandat 313.987 kb on - strandat 313.995 kb on - strandat 314.035 kb on + strandat 314.036 kb on - strandat 314.048 kb on - strandat 314.052 kb on + strandat 314.053 kb on - strandat 314.092 kb on + strandat 314.096 kb on - strandat 314.118 kb on + strandat 314.132 kb on + strandat 314.132 kb on + strandat 314.149 kb on + strandat 314.150 kb on - strandat 314.150 kb on - strandat 314.152 kb on - strandat 314.163 kb on + strandat 314.186 kb on - strandat 314.207 kb on - strandat 314.236 kb on + strand, within BACOVA_03984at 314.242 kb on + strand, within BACOVA_03984at 314.243 kb on - strand, within BACOVA_03984at 314.243 kb on - strand, within BACOVA_03984at 314.243 kb on - strand, within BACOVA_03984at 314.252 kb on + strand, within BACOVA_03984at 314.283 kb on - strand, within BACOVA_03984at 314.283 kb on - strand, within BACOVA_03984at 314.316 kb on + strand, within BACOVA_03984at 314.320 kb on + strand, within BACOVA_03984at 314.321 kb on - strand, within BACOVA_03984at 314.321 kb on - strand, within BACOVA_03984at 314.328 kb on + strand, within BACOVA_03984at 314.328 kb on + strand, within BACOVA_03984at 314.329 kb on - strand, within BACOVA_03984at 314.329 kb on - strand, within BACOVA_03984at 314.329 kb on - strand, within BACOVA_03984at 314.369 kb on + strand, within BACOVA_03984at 314.369 kb on + strand, within BACOVA_03984at 314.374 kb on + strand, within BACOVA_03984at 314.375 kb on - strand, within BACOVA_03984at 314.414 kb on + strand, within BACOVA_03984at 314.445 kb on + strand, within BACOVA_03984at 314.446 kb on - strand, within BACOVA_03984at 314.487 kb on - strand, within BACOVA_03984at 314.487 kb on - strand, within BACOVA_03984at 314.487 kb on - strand, within BACOVA_03984at 314.487 kb on - strand, within BACOVA_03984at 314.545 kb on - strand, within BACOVA_03984at 314.563 kb on - strand, within BACOVA_03984at 314.591 kb on - strand, within BACOVA_03984at 314.708 kb on + strand, within BACOVA_03984at 314.731 kb on + strand, within BACOVA_03984at 314.736 kb on + strand, within BACOVA_03984at 314.736 kb on + strand, within BACOVA_03984at 314.737 kb on - strand, within BACOVA_03984at 314.739 kb on - strand, within BACOVA_03984at 314.740 kb on + strand, within BACOVA_03984at 314.766 kb on - strand, within BACOVA_03984at 314.769 kb on + strand, within BACOVA_03984at 314.802 kb on + strand, within BACOVA_03984at 314.807 kb on + strand, within BACOVA_03984at 314.808 kb on - strand, within BACOVA_03984at 314.808 kb on - strand, within BACOVA_03984at 314.808 kb on - strand, within BACOVA_03984at 314.808 kb on - strand, within BACOVA_03984at 314.809 kb on + strand, within BACOVA_03984at 314.810 kb on - strand, within BACOVA_03984at 314.812 kb on + strand, within BACOVA_03984at 315.043 kb on + strand, within BACOVA_03984at 315.044 kb on - strand, within BACOVA_03984at 315.092 kb on + strand, within BACOVA_03984at 315.092 kb on + strand, within BACOVA_03984at 315.092 kb on + strand, within BACOVA_03984at 315.092 kb on + strand, within BACOVA_03984at 315.093 kb on - strand, within BACOVA_03984at 315.118 kb on - strand, within BACOVA_03984at 315.128 kb on + strand, within BACOVA_03984at 315.129 kb on - strand, within BACOVA_03984at 315.158 kb on - strand, within BACOVA_03984at 315.158 kb on - strand, within BACOVA_03984at 315.170 kb on + strand, within BACOVA_03984at 315.170 kb on + strand, within BACOVA_03984at 315.192 kb on + strand, within BACOVA_03984at 315.268 kb on + strand, within BACOVA_03984at 315.268 kb on + strand, within BACOVA_03984at 315.269 kb on - strand, within BACOVA_03984at 315.294 kb on + strand, within BACOVA_03984at 315.301 kb on + strand, within BACOVA_03984at 315.302 kb on - strand, within BACOVA_03984at 315.329 kb on - strand, within BACOVA_03984at 315.359 kb on + strand, within BACOVA_03984at 315.359 kb on + strand, within BACOVA_03984at 315.361 kb on + strand, within BACOVA_03984at 315.379 kb on + strand, within BACOVA_03984at 315.393 kb on + strand, within BACOVA_03984at 315.415 kb on - strand, within BACOVA_03984at 315.506 kb on + strand, within BACOVA_03984at 315.506 kb on + strand, within BACOVA_03984at 315.506 kb on + strand, within BACOVA_03984at 315.506 kb on + strand, within BACOVA_03984at 315.662 kb on + strand, within BACOVA_03984at 315.669 kb on + strand, within BACOVA_03984at 315.697 kb on + strand, within BACOVA_03984at 315.796 kb on - strandat 315.865 kb on + strandat 315.898 kb on + strandat 315.915 kb on + strandat 315.916 kb on - strandat 315.917 kb on + strandat 315.917 kb on + strandat 315.931 kb on + strandat 316.038 kb on + strand, within BACOVA_03985at 316.097 kb on + strandat 316.155 kb on + strandat 316.178 kb on + strandat 316.179 kb on - strandat 316.266 kb on + strandat 316.267 kb on - strandat 316.282 kb on - strandat 316.302 kb on - strandat 316.429 kb on + strand, within BACOVA_03986at 316.457 kb on - strand, within BACOVA_03986at 316.595 kb on + strand, within BACOVA_03986at 316.595 kb on + strand, within BACOVA_03986at 316.863 kb on + strand, within BACOVA_03986

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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313,063 + BACOVA_03983 0.43 +0.5
313,064 - BACOVA_03983 0.43 -1.4
313,064 - BACOVA_03983 0.43 +1.4
313,070 + BACOVA_03983 0.44 +0.8
313,072 + BACOVA_03983 0.44 +0.6
313,072 + BACOVA_03983 0.44 +0.2
313,073 - BACOVA_03983 0.44 -1.0
313,085 - BACOVA_03983 0.45 -0.7
313,085 - BACOVA_03983 0.45 -0.5
313,160 - BACOVA_03983 0.50 -0.2
313,163 + BACOVA_03983 0.50 -0.1
313,249 + BACOVA_03983 0.57 +1.4
313,261 - BACOVA_03983 0.58 +0.6
313,268 - BACOVA_03983 0.58 +0.2
313,300 + BACOVA_03983 0.60 -0.0
313,301 - BACOVA_03983 0.60 +0.2
313,303 + BACOVA_03983 0.61 +0.0
313,304 - BACOVA_03983 0.61 -1.1
313,307 - BACOVA_03983 0.61 +0.8
313,307 - BACOVA_03983 0.61 -0.2
313,307 - BACOVA_03983 0.61 +0.8
313,310 + BACOVA_03983 0.61 -1.5
313,310 + BACOVA_03983 0.61 +2.4
313,311 - BACOVA_03983 0.61 -0.2
313,366 + BACOVA_03983 0.65 -0.8
313,444 + BACOVA_03983 0.71 -2.4
313,487 - BACOVA_03983 0.74 -0.2
313,489 + BACOVA_03983 0.74 +0.6
313,511 - BACOVA_03983 0.76 -0.8
313,617 - BACOVA_03983 0.83 +0.4
313,640 + BACOVA_03983 0.85 -0.1
313,640 + BACOVA_03983 0.85 +1.4
313,655 - BACOVA_03983 0.86 +0.1
313,657 + BACOVA_03983 0.86 -1.4
313,720 + +0.4
313,950 - -0.7
313,954 + +0.2
313,986 + -0.7
313,987 - -0.4
313,995 - +0.5
314,035 + -0.3
314,036 - -1.0
314,048 - -1.0
314,052 + +0.9
314,053 - -0.6
314,092 + +1.4
314,096 - -1.5
314,118 + +0.3
314,132 + -0.2
314,132 + -0.2
314,149 + +0.5
314,150 - -0.2
314,150 - -0.4
314,152 - +0.2
314,163 + -0.5
314,186 - +0.8
314,207 - -0.0
314,236 + BACOVA_03984 0.11 +0.0
314,242 + BACOVA_03984 0.11 +0.8
314,243 - BACOVA_03984 0.11 +0.8
314,243 - BACOVA_03984 0.11 +0.5
314,243 - BACOVA_03984 0.11 +0.1
314,252 + BACOVA_03984 0.12 -0.5
314,283 - BACOVA_03984 0.14 -0.4
314,283 - BACOVA_03984 0.14 -0.1
314,316 + BACOVA_03984 0.15 +0.3
314,320 + BACOVA_03984 0.16 -1.2
314,321 - BACOVA_03984 0.16 -0.0
314,321 - BACOVA_03984 0.16 +0.5
314,328 + BACOVA_03984 0.16 +0.4
314,328 + BACOVA_03984 0.16 +1.2
314,329 - BACOVA_03984 0.16 +1.1
314,329 - BACOVA_03984 0.16 -1.5
314,329 - BACOVA_03984 0.16 +0.2
314,369 + BACOVA_03984 0.18 +1.0
314,369 + BACOVA_03984 0.18 +2.4
314,374 + BACOVA_03984 0.18 +1.6
314,375 - BACOVA_03984 0.18 -0.8
314,414 + BACOVA_03984 0.21 -0.2
314,445 + BACOVA_03984 0.22 +1.3
314,446 - BACOVA_03984 0.22 +0.2
314,487 - BACOVA_03984 0.24 -0.1
314,487 - BACOVA_03984 0.24 +1.4
314,487 - BACOVA_03984 0.24 -0.0
314,487 - BACOVA_03984 0.24 -1.0
314,545 - BACOVA_03984 0.27 +0.5
314,563 - BACOVA_03984 0.28 -0.0
314,591 - BACOVA_03984 0.30 +0.8
314,708 + BACOVA_03984 0.36 -1.7
314,731 + BACOVA_03984 0.37 +1.0
314,736 + BACOVA_03984 0.38 -1.0
314,736 + BACOVA_03984 0.38 +0.3
314,737 - BACOVA_03984 0.38 -0.5
314,739 - BACOVA_03984 0.38 -1.7
314,740 + BACOVA_03984 0.38 +0.6
314,766 - BACOVA_03984 0.39 +1.1
314,769 + BACOVA_03984 0.39 -0.2
314,802 + BACOVA_03984 0.41 -0.5
314,807 + BACOVA_03984 0.41 -1.2
314,808 - BACOVA_03984 0.41 +0.8
314,808 - BACOVA_03984 0.41 -1.0
314,808 - BACOVA_03984 0.41 +0.1
314,808 - BACOVA_03984 0.41 -1.7
314,809 + BACOVA_03984 0.41 +0.0
314,810 - BACOVA_03984 0.41 +0.8
314,812 + BACOVA_03984 0.42 -1.6
315,043 + BACOVA_03984 0.54 -1.5
315,044 - BACOVA_03984 0.54 -2.0
315,092 + BACOVA_03984 0.56 +1.2
315,092 + BACOVA_03984 0.56 -1.0
315,092 + BACOVA_03984 0.56 -0.2
315,092 + BACOVA_03984 0.56 +0.3
315,093 - BACOVA_03984 0.56 -1.3
315,118 - BACOVA_03984 0.58 -0.4
315,128 + BACOVA_03984 0.58 -0.5
315,129 - BACOVA_03984 0.58 +0.8
315,158 - BACOVA_03984 0.60 -0.2
315,158 - BACOVA_03984 0.60 +1.0
315,170 + BACOVA_03984 0.61 +0.6
315,170 + BACOVA_03984 0.61 +1.8
315,192 + BACOVA_03984 0.62 +0.3
315,268 + BACOVA_03984 0.66 -0.6
315,268 + BACOVA_03984 0.66 +0.5
315,269 - BACOVA_03984 0.66 +0.0
315,294 + BACOVA_03984 0.67 +0.2
315,301 + BACOVA_03984 0.68 +0.8
315,302 - BACOVA_03984 0.68 +0.8
315,329 - BACOVA_03984 0.69 +0.8
315,359 + BACOVA_03984 0.71 +0.8
315,359 + BACOVA_03984 0.71 +0.2
315,361 + BACOVA_03984 0.71 +1.8
315,379 + BACOVA_03984 0.72 -0.3
315,393 + BACOVA_03984 0.72 +0.5
315,415 - BACOVA_03984 0.74 +0.2
315,506 + BACOVA_03984 0.78 +0.8
315,506 + BACOVA_03984 0.78 -0.1
315,506 + BACOVA_03984 0.78 -2.5
315,506 + BACOVA_03984 0.78 +0.7
315,662 + BACOVA_03984 0.87 +0.4
315,669 + BACOVA_03984 0.87 +1.2
315,697 + BACOVA_03984 0.89 +1.0
315,796 - -0.4
315,865 + -0.4
315,898 + -0.1
315,915 + -0.8
315,916 - -0.0
315,917 + +0.8
315,917 + -0.1
315,931 + +0.6
316,038 + BACOVA_03985 0.71 -1.4
316,097 + +0.8
316,155 + +0.4
316,178 + -1.0
316,179 - -3.1
316,266 + -0.2
316,267 - -0.8
316,282 - +0.2
316,302 - -0.5
316,429 + BACOVA_03986 0.15 -0.2
316,457 - BACOVA_03986 0.16 -0.5
316,595 + BACOVA_03986 0.25 -2.0
316,595 + BACOVA_03986 0.25 -1.8
316,863 + BACOVA_03986 0.40 -0.5

Or see this region's nucleotide sequence