Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02593 and BACOVA_02594 are separated by 83 nucleotides BACOVA_02594 and BACOVA_02595 are separated by 180 nucleotides
BACOVA_02593: BACOVA_02593 - hypothetical protein, at 363,548 to 364,669
_02593
BACOVA_02594: BACOVA_02594 - hypothetical protein, at 364,753 to 365,295
_02594
BACOVA_02595: BACOVA_02595 - hypothetical protein, at 365,476 to 367,032
_02595
Position (kb) 364
365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 363.882 kb on + strand, within BACOVA_02593 at 363.970 kb on + strand, within BACOVA_02593 at 363.970 kb on + strand, within BACOVA_02593 at 363.999 kb on - strand, within BACOVA_02593 at 364.038 kb on + strand, within BACOVA_02593 at 364.114 kb on + strand, within BACOVA_02593 at 364.114 kb on + strand, within BACOVA_02593 at 364.151 kb on + strand, within BACOVA_02593 at 364.169 kb on + strand, within BACOVA_02593 at 364.169 kb on + strand, within BACOVA_02593 at 364.169 kb on + strand, within BACOVA_02593 at 364.170 kb on - strand, within BACOVA_02593 at 364.170 kb on - strand, within BACOVA_02593 at 364.171 kb on + strand, within BACOVA_02593 at 364.200 kb on - strand, within BACOVA_02593 at 364.292 kb on - strand, within BACOVA_02593 at 364.304 kb on + strand, within BACOVA_02593 at 364.305 kb on - strand, within BACOVA_02593 at 364.427 kb on + strand, within BACOVA_02593 at 364.428 kb on - strand, within BACOVA_02593 at 364.459 kb on + strand, within BACOVA_02593 at 364.460 kb on - strand, within BACOVA_02593 at 364.465 kb on + strand, within BACOVA_02593 at 364.532 kb on + strand, within BACOVA_02593 at 364.533 kb on - strand, within BACOVA_02593 at 364.534 kb on + strand, within BACOVA_02593 at 364.535 kb on - strand, within BACOVA_02593 at 364.583 kb on + strand at 364.675 kb on + strand at 364.678 kb on - strand at 364.679 kb on + strand at 364.682 kb on - strand at 364.682 kb on - strand at 364.686 kb on - strand at 364.694 kb on - strand at 364.948 kb on + strand, within BACOVA_02594 at 364.948 kb on + strand, within BACOVA_02594 at 365.077 kb on + strand, within BACOVA_02594 at 365.125 kb on + strand, within BACOVA_02594 at 365.130 kb on + strand, within BACOVA_02594 at 365.131 kb on - strand, within BACOVA_02594 at 365.134 kb on + strand, within BACOVA_02594 at 365.134 kb on + strand, within BACOVA_02594 at 365.134 kb on + strand, within BACOVA_02594 at 365.135 kb on - strand, within BACOVA_02594 at 365.140 kb on - strand, within BACOVA_02594 at 365.154 kb on - strand, within BACOVA_02594 at 365.157 kb on + strand, within BACOVA_02594 at 365.190 kb on + strand, within BACOVA_02594 at 365.257 kb on + strand at 365.258 kb on - strand at 365.309 kb on + strand at 365.317 kb on - strand at 365.364 kb on + strand at 365.364 kb on + strand at 365.368 kb on + strand at 365.369 kb on - strand at 365.473 kb on + strand at 365.475 kb on + strand at 365.475 kb on + strand at 365.566 kb on + strand at 365.868 kb on + strand, within BACOVA_02595 at 366.280 kb on - strand, within BACOVA_02595
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 363,882 + BACOVA_02593 0.30 -1.6 363,970 + BACOVA_02593 0.38 -1.3 363,970 + BACOVA_02593 0.38 +0.2 363,999 - BACOVA_02593 0.40 -0.1 364,038 + BACOVA_02593 0.44 -1.3 364,114 + BACOVA_02593 0.50 -0.5 364,114 + BACOVA_02593 0.50 -0.5 364,151 + BACOVA_02593 0.54 -1.8 364,169 + BACOVA_02593 0.55 -0.8 364,169 + BACOVA_02593 0.55 -2.1 364,169 + BACOVA_02593 0.55 -2.4 364,170 - BACOVA_02593 0.55 -1.6 364,170 - BACOVA_02593 0.55 -1.3 364,171 + BACOVA_02593 0.56 -1.8 364,200 - BACOVA_02593 0.58 -0.3 364,292 - BACOVA_02593 0.66 -1.3 364,304 + BACOVA_02593 0.67 +0.4 364,305 - BACOVA_02593 0.67 -0.3 364,427 + BACOVA_02593 0.78 -3.7 364,428 - BACOVA_02593 0.78 -2.1 364,459 + BACOVA_02593 0.81 -0.3 364,460 - BACOVA_02593 0.81 +0.2 364,465 + BACOVA_02593 0.82 +1.3 364,532 + BACOVA_02593 0.88 -0.8 364,533 - BACOVA_02593 0.88 -0.3 364,534 + BACOVA_02593 0.88 -0.3 364,535 - BACOVA_02593 0.88 -0.8 364,583 + -0.6 364,675 + -1.2 364,678 - -1.6 364,679 + -0.3 364,682 - +0.7 364,682 - -1.3 364,686 - +0.3 364,694 - -1.3 364,948 + BACOVA_02594 0.36 -2.1 364,948 + BACOVA_02594 0.36 -0.8 365,077 + BACOVA_02594 0.60 -2.1 365,125 + BACOVA_02594 0.69 -0.3 365,130 + BACOVA_02594 0.69 -1.3 365,131 - BACOVA_02594 0.70 +0.7 365,134 + BACOVA_02594 0.70 -1.8 365,134 + BACOVA_02594 0.70 +0.7 365,134 + BACOVA_02594 0.70 -0.8 365,135 - BACOVA_02594 0.70 -0.3 365,140 - BACOVA_02594 0.71 +0.1 365,154 - BACOVA_02594 0.74 +1.7 365,157 + BACOVA_02594 0.74 -2.1 365,190 + BACOVA_02594 0.80 -0.8 365,257 + -1.6 365,258 - +0.0 365,309 + -1.8 365,317 - +0.3 365,364 + -1.1 365,364 + -0.6 365,368 + -0.3 365,369 - +1.3 365,473 + -0.8 365,475 + -3.0 365,475 + -2.0 365,566 + -0.1 365,868 + BACOVA_02595 0.25 +0.2 366,280 - BACOVA_02595 0.52 -0.5
Or see this region's nucleotide sequence