Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01340 and BACOVA_01341 are separated by 35 nucleotides BACOVA_01341 and BACOVA_01342 overlap by 4 nucleotides BACOVA_01342 and BACOVA_01343 are separated by 73 nucleotides BACOVA_01343 and BACOVA_01344 are separated by 37 nucleotides
BACOVA_01340: BACOVA_01340 - DNA-binding helix-turn-helix protein, at 4,110 to 4,460
_01340
BACOVA_01341: BACOVA_01341 - hypothetical protein, at 4,496 to 4,828
_01341
BACOVA_01342: BACOVA_01342 - hypothetical protein, at 4,825 to 5,463
_01342
BACOVA_01343: BACOVA_01343 - ABC transporter, ATP-binding protein, at 5,537 to 6,310
_01343
BACOVA_01344: BACOVA_01344 - ABC transporter, substrate-binding protein, at 6,348 to 7,271
_01344
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3.825 kb on - strand at 3.907 kb on - strand at 3.927 kb on + strand at 3.958 kb on + strand at 3.961 kb on + strand at 3.962 kb on - strand at 4.022 kb on + strand at 4.025 kb on + strand at 4.025 kb on + strand at 4.026 kb on - strand at 4.042 kb on - strand at 4.098 kb on - strand at 4.098 kb on - strand at 4.098 kb on - strand at 4.140 kb on + strand at 4.164 kb on - strand, within BACOVA_01340 at 4.184 kb on + strand, within BACOVA_01340 at 4.192 kb on + strand, within BACOVA_01340 at 4.197 kb on - strand, within BACOVA_01340 at 4.235 kb on + strand, within BACOVA_01340 at 4.236 kb on - strand, within BACOVA_01340 at 4.238 kb on + strand, within BACOVA_01340 at 4.238 kb on + strand, within BACOVA_01340 at 4.241 kb on + strand, within BACOVA_01340 at 4.262 kb on + strand, within BACOVA_01340 at 4.326 kb on - strand, within BACOVA_01340 at 4.348 kb on + strand, within BACOVA_01340 at 4.349 kb on - strand, within BACOVA_01340 at 4.365 kb on - strand, within BACOVA_01340 at 4.367 kb on - strand, within BACOVA_01340 at 4.379 kb on + strand, within BACOVA_01340 at 4.379 kb on + strand, within BACOVA_01340 at 4.379 kb on + strand, within BACOVA_01340 at 4.384 kb on + strand, within BACOVA_01340 at 4.384 kb on + strand, within BACOVA_01340 at 4.385 kb on - strand, within BACOVA_01340 at 4.462 kb on + strand at 4.462 kb on + strand at 4.480 kb on + strand at 4.484 kb on - strand at 4.490 kb on + strand at 4.495 kb on + strand at 4.495 kb on + strand at 4.495 kb on + strand at 4.496 kb on - strand at 4.496 kb on - strand at 4.496 kb on - strand at 4.496 kb on - strand at 4.496 kb on - strand at 4.752 kb on - strand, within BACOVA_01341 at 4.798 kb on + strand at 4.818 kb on + strand at 4.818 kb on + strand at 4.819 kb on - strand at 4.824 kb on + strand at 4.825 kb on - strand at 4.895 kb on - strand, within BACOVA_01342 at 4.963 kb on - strand, within BACOVA_01342 at 4.985 kb on + strand, within BACOVA_01342 at 5.069 kb on + strand, within BACOVA_01342 at 5.069 kb on + strand, within BACOVA_01342 at 5.070 kb on - strand, within BACOVA_01342 at 5.083 kb on + strand, within BACOVA_01342 at 5.084 kb on - strand, within BACOVA_01342 at 5.084 kb on - strand, within BACOVA_01342 at 5.114 kb on - strand, within BACOVA_01342 at 5.128 kb on + strand, within BACOVA_01342 at 5.223 kb on + strand, within BACOVA_01342 at 5.242 kb on + strand, within BACOVA_01342 at 5.243 kb on - strand, within BACOVA_01342 at 5.246 kb on - strand, within BACOVA_01342 at 5.265 kb on - strand, within BACOVA_01342 at 5.306 kb on + strand, within BACOVA_01342 at 5.306 kb on + strand, within BACOVA_01342 at 5.307 kb on - strand, within BACOVA_01342 at 5.355 kb on + strand, within BACOVA_01342 at 5.355 kb on + strand, within BACOVA_01342 at 5.358 kb on + strand, within BACOVA_01342 at 5.361 kb on + strand, within BACOVA_01342 at 5.410 kb on + strand at 5.411 kb on - strand at 5.411 kb on - strand at 5.432 kb on + strand at 5.440 kb on + strand at 5.440 kb on + strand at 5.441 kb on - strand at 5.441 kb on - strand at 5.441 kb on - strand at 5.445 kb on - strand at 5.445 kb on - strand at 5.505 kb on - strand at 5.505 kb on - strand at 5.515 kb on - strand at 5.532 kb on + strand at 5.533 kb on - strand at 5.538 kb on + strand at 5.539 kb on - strand at 5.581 kb on + strand at 5.581 kb on + strand at 5.658 kb on + strand, within BACOVA_01343 at 5.658 kb on + strand, within BACOVA_01343 at 5.659 kb on - strand, within BACOVA_01343 at 5.694 kb on - strand, within BACOVA_01343 at 5.694 kb on - strand, within BACOVA_01343 at 5.706 kb on - strand, within BACOVA_01343 at 5.802 kb on + strand, within BACOVA_01343 at 5.802 kb on + strand, within BACOVA_01343 at 5.803 kb on - strand, within BACOVA_01343 at 5.849 kb on - strand, within BACOVA_01343 at 5.996 kb on + strand, within BACOVA_01343 at 5.996 kb on + strand, within BACOVA_01343 at 6.002 kb on + strand, within BACOVA_01343 at 6.003 kb on - strand, within BACOVA_01343 at 6.003 kb on - strand, within BACOVA_01343 at 6.050 kb on + strand, within BACOVA_01343 at 6.052 kb on + strand, within BACOVA_01343 at 6.060 kb on + strand, within BACOVA_01343 at 6.072 kb on + strand, within BACOVA_01343 at 6.073 kb on - strand, within BACOVA_01343 at 6.097 kb on + strand, within BACOVA_01343 at 6.119 kb on - strand, within BACOVA_01343 at 6.127 kb on + strand, within BACOVA_01343 at 6.128 kb on - strand, within BACOVA_01343 at 6.172 kb on + strand, within BACOVA_01343 at 6.172 kb on + strand, within BACOVA_01343 at 6.172 kb on - strand, within BACOVA_01343 at 6.173 kb on - strand, within BACOVA_01343 at 6.203 kb on + strand, within BACOVA_01343 at 6.204 kb on - strand, within BACOVA_01343 at 6.204 kb on - strand, within BACOVA_01343 at 6.204 kb on - strand, within BACOVA_01343 at 6.205 kb on + strand, within BACOVA_01343 at 6.205 kb on + strand, within BACOVA_01343 at 6.208 kb on + strand, within BACOVA_01343 at 6.209 kb on - strand, within BACOVA_01343 at 6.209 kb on - strand, within BACOVA_01343 at 6.228 kb on + strand, within BACOVA_01343 at 6.228 kb on + strand, within BACOVA_01343 at 6.229 kb on - strand, within BACOVA_01343 at 6.229 kb on - strand, within BACOVA_01343 at 6.236 kb on + strand at 6.236 kb on + strand at 6.236 kb on + strand at 6.237 kb on - strand at 6.343 kb on + strand at 6.350 kb on - strand at 6.412 kb on + strand at 6.412 kb on + strand at 6.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 3,825 - +0.2 3,907 - -0.5 3,927 + -0.2 3,958 + +0.3 3,961 + +3.2 3,962 - +0.4 4,022 + +0.3 4,025 + -0.5 4,025 + +0.9 4,026 - -0.2 4,042 - -0.4 4,098 - -0.8 4,098 - -0.1 4,098 - -0.6 4,140 + -1.1 4,164 - BACOVA_01340 0.15 +0.3 4,184 + BACOVA_01340 0.21 -0.3 4,192 + BACOVA_01340 0.23 +0.3 4,197 - BACOVA_01340 0.25 -0.4 4,235 + BACOVA_01340 0.36 -1.1 4,236 - BACOVA_01340 0.36 -0.1 4,238 + BACOVA_01340 0.36 -0.3 4,238 + BACOVA_01340 0.36 +0.6 4,241 + BACOVA_01340 0.37 -1.1 4,262 + BACOVA_01340 0.43 +0.1 4,326 - BACOVA_01340 0.62 -0.3 4,348 + BACOVA_01340 0.68 +0.6 4,349 - BACOVA_01340 0.68 -0.1 4,365 - BACOVA_01340 0.73 -0.1 4,367 - BACOVA_01340 0.73 +0.0 4,379 + BACOVA_01340 0.77 -0.6 4,379 + BACOVA_01340 0.77 +0.4 4,379 + BACOVA_01340 0.77 -1.1 4,384 + BACOVA_01340 0.78 +0.1 4,384 + BACOVA_01340 0.78 +0.3 4,385 - BACOVA_01340 0.78 +0.2 4,462 + -0.1 4,462 + -0.2 4,480 + +0.4 4,484 - -0.1 4,490 + +0.0 4,495 + -0.5 4,495 + -1.1 4,495 + -0.8 4,496 - -1.1 4,496 - -0.0 4,496 - +0.9 4,496 - +0.5 4,496 - -0.6 4,752 - BACOVA_01341 0.77 -1.6 4,798 + -0.8 4,818 + -2.1 4,818 + -0.2 4,819 - -1.1 4,824 + -0.3 4,825 - +0.0 4,895 - BACOVA_01342 0.11 +0.1 4,963 - BACOVA_01342 0.22 -0.2 4,985 + BACOVA_01342 0.25 -0.9 5,069 + BACOVA_01342 0.38 +0.6 5,069 + BACOVA_01342 0.38 +0.2 5,070 - BACOVA_01342 0.38 -1.0 5,083 + BACOVA_01342 0.40 +0.3 5,084 - BACOVA_01342 0.41 -0.1 5,084 - BACOVA_01342 0.41 -0.3 5,114 - BACOVA_01342 0.45 +0.9 5,128 + BACOVA_01342 0.47 -1.4 5,223 + BACOVA_01342 0.62 -0.5 5,242 + BACOVA_01342 0.65 -0.3 5,243 - BACOVA_01342 0.65 -1.1 5,246 - BACOVA_01342 0.66 -0.1 5,265 - BACOVA_01342 0.69 +0.6 5,306 + BACOVA_01342 0.75 -2.2 5,306 + BACOVA_01342 0.75 +0.2 5,307 - BACOVA_01342 0.75 -0.1 5,355 + BACOVA_01342 0.83 -0.1 5,355 + BACOVA_01342 0.83 +0.1 5,358 + BACOVA_01342 0.83 +0.8 5,361 + BACOVA_01342 0.84 -0.2 5,410 + -0.3 5,411 - -0.9 5,411 - +0.1 5,432 + -0.5 5,440 + -0.1 5,440 + -2.0 5,441 - -0.1 5,441 - +1.2 5,441 - -0.1 5,445 - +0.5 5,445 - +0.0 5,505 - -0.3 5,505 - -0.6 5,515 - +0.9 5,532 + -0.6 5,533 - -0.1 5,538 + +0.1 5,539 - +0.7 5,581 + +0.4 5,581 + +0.1 5,658 + BACOVA_01343 0.16 -0.0 5,658 + BACOVA_01343 0.16 -0.1 5,659 - BACOVA_01343 0.16 +0.3 5,694 - BACOVA_01343 0.20 -1.4 5,694 - BACOVA_01343 0.20 +0.4 5,706 - BACOVA_01343 0.22 +1.4 5,802 + BACOVA_01343 0.34 +0.3 5,802 + BACOVA_01343 0.34 +0.2 5,803 - BACOVA_01343 0.34 -0.3 5,849 - BACOVA_01343 0.40 +0.9 5,996 + BACOVA_01343 0.59 -0.3 5,996 + BACOVA_01343 0.59 -0.3 6,002 + BACOVA_01343 0.60 -1.2 6,003 - BACOVA_01343 0.60 -0.6 6,003 - BACOVA_01343 0.60 -0.5 6,050 + BACOVA_01343 0.66 +0.9 6,052 + BACOVA_01343 0.67 +0.8 6,060 + BACOVA_01343 0.68 -2.1 6,072 + BACOVA_01343 0.69 -0.6 6,073 - BACOVA_01343 0.69 -0.1 6,097 + BACOVA_01343 0.72 -0.1 6,119 - BACOVA_01343 0.75 -1.1 6,127 + BACOVA_01343 0.76 +0.9 6,128 - BACOVA_01343 0.76 -0.9 6,172 + BACOVA_01343 0.82 -1.2 6,172 + BACOVA_01343 0.82 -0.2 6,172 - BACOVA_01343 0.82 +0.2 6,173 - BACOVA_01343 0.82 -0.3 6,203 + BACOVA_01343 0.86 -0.8 6,204 - BACOVA_01343 0.86 +0.1 6,204 - BACOVA_01343 0.86 +1.7 6,204 - BACOVA_01343 0.86 -0.6 6,205 + BACOVA_01343 0.86 -0.1 6,205 + BACOVA_01343 0.86 +0.1 6,208 + BACOVA_01343 0.87 -0.5 6,209 - BACOVA_01343 0.87 -0.7 6,209 - BACOVA_01343 0.87 +0.2 6,228 + BACOVA_01343 0.89 -0.3 6,228 + BACOVA_01343 0.89 +0.3 6,229 - BACOVA_01343 0.89 +1.1 6,229 - BACOVA_01343 0.89 -0.5 6,236 + -0.6 6,236 + +0.3 6,236 + +1.2 6,237 - -1.1 6,343 + -0.5 6,350 - -0.3 6,412 + +0.9 6,412 + +0.4 6,418 - -0.9
Or see this region's nucleotide sequence