Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05278 and BACOVA_05279 are separated by 15 nucleotides BACOVA_05279 and BACOVA_05280 are separated by 73 nucleotides BACOVA_05280 and BACOVA_05281 are separated by 73 nucleotides
BACOVA_05278: BACOVA_05278 - TonB-linked outer membrane protein, SusC/RagA family, at 768,803 to 771,697
_05278
BACOVA_05279: BACOVA_05279 - hypothetical protein, at 771,713 to 773,308
_05279
BACOVA_05280: BACOVA_05280 - hypothetical protein, at 773,382 to 774,089
_05280
BACOVA_05281: BACOVA_05281 - xanthine permease, at 774,163 to 775,476
_05281
Position (kb) 771
772
773
774 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 770.777 kb on + strand, within BACOVA_05278 at 770.778 kb on - strand, within BACOVA_05278 at 770.791 kb on + strand, within BACOVA_05278 at 770.792 kb on - strand, within BACOVA_05278 at 770.792 kb on - strand, within BACOVA_05278 at 770.792 kb on - strand, within BACOVA_05278 at 770.796 kb on - strand, within BACOVA_05278 at 770.797 kb on + strand, within BACOVA_05278 at 770.798 kb on - strand, within BACOVA_05278 at 770.798 kb on - strand, within BACOVA_05278 at 770.833 kb on + strand, within BACOVA_05278 at 770.833 kb on + strand, within BACOVA_05278 at 770.834 kb on - strand, within BACOVA_05278 at 770.834 kb on - strand, within BACOVA_05278 at 770.837 kb on + strand, within BACOVA_05278 at 770.838 kb on - strand, within BACOVA_05278 at 770.838 kb on - strand, within BACOVA_05278 at 770.849 kb on + strand, within BACOVA_05278 at 770.853 kb on + strand, within BACOVA_05278 at 770.854 kb on - strand, within BACOVA_05278 at 770.854 kb on - strand, within BACOVA_05278 at 770.854 kb on - strand, within BACOVA_05278 at 770.914 kb on - strand, within BACOVA_05278 at 770.966 kb on - strand, within BACOVA_05278 at 770.966 kb on - strand, within BACOVA_05278 at 771.032 kb on + strand, within BACOVA_05278 at 771.070 kb on + strand, within BACOVA_05278 at 771.071 kb on - strand, within BACOVA_05278 at 771.075 kb on - strand, within BACOVA_05278 at 771.109 kb on + strand, within BACOVA_05278 at 771.134 kb on - strand, within BACOVA_05278 at 771.136 kb on + strand, within BACOVA_05278 at 771.170 kb on - strand, within BACOVA_05278 at 771.181 kb on - strand, within BACOVA_05278 at 771.321 kb on + strand, within BACOVA_05278 at 771.357 kb on - strand, within BACOVA_05278 at 771.361 kb on - strand, within BACOVA_05278 at 771.361 kb on - strand, within BACOVA_05278 at 771.361 kb on - strand, within BACOVA_05278 at 771.403 kb on + strand, within BACOVA_05278 at 771.438 kb on - strand at 771.438 kb on - strand at 771.440 kb on + strand at 771.440 kb on + strand at 771.441 kb on - strand at 771.441 kb on - strand at 771.442 kb on + strand at 771.443 kb on - strand at 771.446 kb on + strand at 771.446 kb on + strand at 771.446 kb on + strand at 771.447 kb on - strand at 771.455 kb on - strand at 771.525 kb on + strand at 771.525 kb on + strand at 771.525 kb on + strand at 771.526 kb on - strand at 771.577 kb on + strand at 771.695 kb on + strand at 771.730 kb on - strand at 771.735 kb on + strand at 771.736 kb on - strand at 771.736 kb on - strand at 771.792 kb on - strand at 771.893 kb on + strand, within BACOVA_05279 at 771.934 kb on - strand, within BACOVA_05279 at 771.967 kb on + strand, within BACOVA_05279 at 771.967 kb on + strand, within BACOVA_05279 at 771.968 kb on - strand, within BACOVA_05279 at 771.968 kb on - strand, within BACOVA_05279 at 771.968 kb on - strand, within BACOVA_05279 at 772.013 kb on + strand, within BACOVA_05279 at 772.014 kb on - strand, within BACOVA_05279 at 772.018 kb on + strand, within BACOVA_05279 at 772.059 kb on - strand, within BACOVA_05279 at 772.059 kb on - strand, within BACOVA_05279 at 772.066 kb on + strand, within BACOVA_05279 at 772.081 kb on - strand, within BACOVA_05279 at 772.081 kb on - strand, within BACOVA_05279 at 772.081 kb on - strand, within BACOVA_05279 at 772.081 kb on - strand, within BACOVA_05279 at 772.082 kb on + strand, within BACOVA_05279 at 772.082 kb on + strand, within BACOVA_05279 at 772.083 kb on - strand, within BACOVA_05279 at 772.187 kb on - strand, within BACOVA_05279 at 772.194 kb on - strand, within BACOVA_05279 at 772.250 kb on + strand, within BACOVA_05279 at 772.284 kb on + strand, within BACOVA_05279 at 772.302 kb on - strand, within BACOVA_05279 at 772.303 kb on + strand, within BACOVA_05279 at 772.304 kb on - strand, within BACOVA_05279 at 772.305 kb on + strand, within BACOVA_05279 at 772.306 kb on - strand, within BACOVA_05279 at 772.364 kb on + strand, within BACOVA_05279 at 772.392 kb on - strand, within BACOVA_05279 at 772.464 kb on + strand, within BACOVA_05279 at 772.479 kb on - strand, within BACOVA_05279 at 772.534 kb on + strand, within BACOVA_05279 at 772.556 kb on - strand, within BACOVA_05279 at 772.556 kb on - strand, within BACOVA_05279 at 772.577 kb on + strand, within BACOVA_05279 at 772.588 kb on + strand, within BACOVA_05279 at 772.589 kb on - strand, within BACOVA_05279 at 772.613 kb on + strand, within BACOVA_05279 at 772.676 kb on + strand, within BACOVA_05279 at 772.711 kb on + strand, within BACOVA_05279 at 772.711 kb on + strand, within BACOVA_05279 at 772.760 kb on - strand, within BACOVA_05279 at 772.860 kb on + strand, within BACOVA_05279 at 772.861 kb on - strand, within BACOVA_05279 at 772.865 kb on - strand, within BACOVA_05279 at 772.937 kb on - strand, within BACOVA_05279 at 772.943 kb on - strand, within BACOVA_05279 at 772.947 kb on - strand, within BACOVA_05279 at 772.960 kb on + strand, within BACOVA_05279 at 772.961 kb on - strand, within BACOVA_05279 at 772.966 kb on - strand, within BACOVA_05279 at 772.978 kb on + strand, within BACOVA_05279 at 773.011 kb on + strand, within BACOVA_05279 at 773.035 kb on + strand, within BACOVA_05279 at 773.036 kb on - strand, within BACOVA_05279 at 773.116 kb on - strand, within BACOVA_05279 at 773.137 kb on + strand, within BACOVA_05279 at 773.137 kb on + strand, within BACOVA_05279 at 773.138 kb on - strand, within BACOVA_05279 at 773.138 kb on - strand, within BACOVA_05279 at 773.140 kb on + strand, within BACOVA_05279 at 773.141 kb on - strand, within BACOVA_05279 at 773.141 kb on - strand, within BACOVA_05279 at 773.141 kb on - strand, within BACOVA_05279 at 773.183 kb on - strand at 773.297 kb on - strand at 773.322 kb on + strand at 773.322 kb on + strand at 773.322 kb on + strand at 773.332 kb on - strand at 773.332 kb on - strand at 773.333 kb on + strand at 773.333 kb on + strand at 773.333 kb on + strand at 773.334 kb on - strand at 773.334 kb on - strand at 773.368 kb on - strand at 773.378 kb on - strand at 773.381 kb on + strand at 773.394 kb on - strand at 773.415 kb on - strand at 773.415 kb on - strand at 773.415 kb on - strand at 773.462 kb on - strand, within BACOVA_05280 at 773.549 kb on + strand, within BACOVA_05280 at 773.566 kb on - strand, within BACOVA_05280 at 773.566 kb on - strand, within BACOVA_05280 at 773.579 kb on + strand, within BACOVA_05280 at 773.587 kb on - strand, within BACOVA_05280 at 773.674 kb on - strand, within BACOVA_05280 at 773.674 kb on - strand, within BACOVA_05280 at 773.675 kb on + strand, within BACOVA_05280 at 773.675 kb on + strand, within BACOVA_05280 at 773.703 kb on + strand, within BACOVA_05280 at 773.711 kb on + strand, within BACOVA_05280 at 773.716 kb on - strand, within BACOVA_05280 at 773.730 kb on - strand, within BACOVA_05280 at 773.780 kb on + strand, within BACOVA_05280 at 773.784 kb on + strand, within BACOVA_05280 at 773.784 kb on + strand, within BACOVA_05280 at 773.784 kb on + strand, within BACOVA_05280 at 773.785 kb on - strand, within BACOVA_05280 at 773.785 kb on - strand, within BACOVA_05280 at 773.786 kb on + strand, within BACOVA_05280 at 773.786 kb on + strand, within BACOVA_05280 at 773.787 kb on - strand, within BACOVA_05280 at 773.787 kb on - strand, within BACOVA_05280 at 773.790 kb on + strand, within BACOVA_05280 at 773.791 kb on - strand, within BACOVA_05280 at 773.791 kb on - strand, within BACOVA_05280 at 773.834 kb on + strand, within BACOVA_05280 at 773.910 kb on + strand, within BACOVA_05280 at 773.922 kb on - strand, within BACOVA_05280 at 774.049 kb on - strand at 774.049 kb on - strand at 774.145 kb on + strand at 774.147 kb on + strand at 774.148 kb on - strand at 774.148 kb on - strand at 774.230 kb on + strand at 774.230 kb on + strand at 774.230 kb on + strand at 774.262 kb on - strand at 774.262 kb on - strand at 774.264 kb on + strand at 774.265 kb on - strand at 774.275 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 770,777 + BACOVA_05278 0.68 +0.0 770,778 - BACOVA_05278 0.68 -1.6 770,791 + BACOVA_05278 0.69 +0.3 770,792 - BACOVA_05278 0.69 -1.7 770,792 - BACOVA_05278 0.69 -0.7 770,792 - BACOVA_05278 0.69 -1.0 770,796 - BACOVA_05278 0.69 -1.5 770,797 + BACOVA_05278 0.69 -0.8 770,798 - BACOVA_05278 0.69 +0.8 770,798 - BACOVA_05278 0.69 +0.8 770,833 + BACOVA_05278 0.70 +0.9 770,833 + BACOVA_05278 0.70 +0.0 770,834 - BACOVA_05278 0.70 -2.0 770,834 - BACOVA_05278 0.70 +0.5 770,837 + BACOVA_05278 0.70 -0.5 770,838 - BACOVA_05278 0.70 -0.5 770,838 - BACOVA_05278 0.70 -0.2 770,849 + BACOVA_05278 0.71 +0.0 770,853 + BACOVA_05278 0.71 +1.3 770,854 - BACOVA_05278 0.71 -1.0 770,854 - BACOVA_05278 0.71 +0.0 770,854 - BACOVA_05278 0.71 -1.4 770,914 - BACOVA_05278 0.73 -0.8 770,966 - BACOVA_05278 0.75 +5.1 770,966 - BACOVA_05278 0.75 -0.7 771,032 + BACOVA_05278 0.77 -2.2 771,070 + BACOVA_05278 0.78 -1.1 771,071 - BACOVA_05278 0.78 +0.3 771,075 - BACOVA_05278 0.78 -1.2 771,109 + BACOVA_05278 0.80 -1.1 771,134 - BACOVA_05278 0.81 -0.8 771,136 + BACOVA_05278 0.81 +0.3 771,170 - BACOVA_05278 0.82 +0.0 771,181 - BACOVA_05278 0.82 +0.0 771,321 + BACOVA_05278 0.87 +0.3 771,357 - BACOVA_05278 0.88 -0.2 771,361 - BACOVA_05278 0.88 -0.1 771,361 - BACOVA_05278 0.88 -1.5 771,361 - BACOVA_05278 0.88 -0.5 771,403 + BACOVA_05278 0.90 -0.5 771,438 - -1.6 771,438 - +1.6 771,440 + +3.6 771,440 + +1.3 771,441 - +0.1 771,441 - +1.1 771,442 + -0.3 771,443 - -0.1 771,446 + -0.3 771,446 + -0.8 771,446 + -0.3 771,447 - +2.3 771,455 - -0.1 771,525 + +1.7 771,525 + -1.1 771,525 + +0.0 771,526 - +1.5 771,577 + -0.5 771,695 + +1.3 771,730 - +0.0 771,735 + +0.1 771,736 - +1.3 771,736 - -0.5 771,792 - +0.3 771,893 + BACOVA_05279 0.11 +0.1 771,934 - BACOVA_05279 0.14 -0.8 771,967 + BACOVA_05279 0.16 +0.0 771,967 + BACOVA_05279 0.16 -0.4 771,968 - BACOVA_05279 0.16 +0.7 771,968 - BACOVA_05279 0.16 +0.0 771,968 - BACOVA_05279 0.16 +1.8 772,013 + BACOVA_05279 0.19 +1.3 772,014 - BACOVA_05279 0.19 +0.7 772,018 + BACOVA_05279 0.19 -0.8 772,059 - BACOVA_05279 0.22 -0.3 772,059 - BACOVA_05279 0.22 -0.3 772,066 + BACOVA_05279 0.22 -0.9 772,081 - BACOVA_05279 0.23 -1.6 772,081 - BACOVA_05279 0.23 +0.2 772,081 - BACOVA_05279 0.23 -0.8 772,081 - BACOVA_05279 0.23 -0.5 772,082 + BACOVA_05279 0.23 -1.6 772,082 + BACOVA_05279 0.23 +0.5 772,083 - BACOVA_05279 0.23 +1.3 772,187 - BACOVA_05279 0.30 -1.8 772,194 - BACOVA_05279 0.30 +1.7 772,250 + BACOVA_05279 0.34 -1.8 772,284 + BACOVA_05279 0.36 -0.5 772,302 - BACOVA_05279 0.37 -0.9 772,303 + BACOVA_05279 0.37 -1.4 772,304 - BACOVA_05279 0.37 -0.1 772,305 + BACOVA_05279 0.37 +0.0 772,306 - BACOVA_05279 0.37 +0.7 772,364 + BACOVA_05279 0.41 +1.9 772,392 - BACOVA_05279 0.43 +0.3 772,464 + BACOVA_05279 0.47 -1.8 772,479 - BACOVA_05279 0.48 +0.5 772,534 + BACOVA_05279 0.51 -1.0 772,556 - BACOVA_05279 0.53 -1.4 772,556 - BACOVA_05279 0.53 -1.0 772,577 + BACOVA_05279 0.54 -1.1 772,588 + BACOVA_05279 0.55 +0.9 772,589 - BACOVA_05279 0.55 -0.5 772,613 + BACOVA_05279 0.56 -0.6 772,676 + BACOVA_05279 0.60 -2.1 772,711 + BACOVA_05279 0.63 -0.9 772,711 + BACOVA_05279 0.63 +1.1 772,760 - BACOVA_05279 0.66 -1.0 772,860 + BACOVA_05279 0.72 -2.3 772,861 - BACOVA_05279 0.72 -2.7 772,865 - BACOVA_05279 0.72 -0.8 772,937 - BACOVA_05279 0.77 -0.3 772,943 - BACOVA_05279 0.77 -0.7 772,947 - BACOVA_05279 0.77 -1.4 772,960 + BACOVA_05279 0.78 -1.4 772,961 - BACOVA_05279 0.78 -1.1 772,966 - BACOVA_05279 0.79 +0.3 772,978 + BACOVA_05279 0.79 +0.7 773,011 + BACOVA_05279 0.81 -1.7 773,035 + BACOVA_05279 0.83 +0.3 773,036 - BACOVA_05279 0.83 -0.5 773,116 - BACOVA_05279 0.88 -1.1 773,137 + BACOVA_05279 0.89 -2.1 773,137 + BACOVA_05279 0.89 +0.7 773,138 - BACOVA_05279 0.89 -0.7 773,138 - BACOVA_05279 0.89 -0.4 773,140 + BACOVA_05279 0.89 -2.4 773,141 - BACOVA_05279 0.89 -2.2 773,141 - BACOVA_05279 0.89 -1.1 773,141 - BACOVA_05279 0.89 +0.2 773,183 - +0.0 773,297 - -0.8 773,322 + -1.5 773,322 + +0.3 773,322 + +3.3 773,332 - -0.3 773,332 - +0.3 773,333 + +1.3 773,333 + +0.0 773,333 + -0.8 773,334 - -0.8 773,334 - -0.7 773,368 - -0.8 773,378 - -0.5 773,381 + +2.2 773,394 - +0.3 773,415 - -1.6 773,415 - -1.3 773,415 - +0.2 773,462 - BACOVA_05280 0.11 +0.7 773,549 + BACOVA_05280 0.24 +1.0 773,566 - BACOVA_05280 0.26 +2.5 773,566 - BACOVA_05280 0.26 -0.2 773,579 + BACOVA_05280 0.28 +0.2 773,587 - BACOVA_05280 0.29 -0.7 773,674 - BACOVA_05280 0.41 -0.5 773,674 - BACOVA_05280 0.41 -0.2 773,675 + BACOVA_05280 0.41 +0.0 773,675 + BACOVA_05280 0.41 +0.7 773,703 + BACOVA_05280 0.45 -0.5 773,711 + BACOVA_05280 0.46 -2.1 773,716 - BACOVA_05280 0.47 -0.5 773,730 - BACOVA_05280 0.49 -1.4 773,780 + BACOVA_05280 0.56 +0.3 773,784 + BACOVA_05280 0.57 +0.7 773,784 + BACOVA_05280 0.57 -1.1 773,784 + BACOVA_05280 0.57 -0.5 773,785 - BACOVA_05280 0.57 +2.7 773,785 - BACOVA_05280 0.57 -0.7 773,786 + BACOVA_05280 0.57 +0.9 773,786 + BACOVA_05280 0.57 +1.0 773,787 - BACOVA_05280 0.57 -2.3 773,787 - BACOVA_05280 0.57 +1.3 773,790 + BACOVA_05280 0.58 +1.5 773,791 - BACOVA_05280 0.58 +3.0 773,791 - BACOVA_05280 0.58 +0.2 773,834 + BACOVA_05280 0.64 -1.0 773,910 + BACOVA_05280 0.75 +0.0 773,922 - BACOVA_05280 0.76 +2.6 774,049 - -0.7 774,049 - +1.0 774,145 + -1.1 774,147 + +0.7 774,148 - +0.3 774,148 - +0.7 774,230 + -1.8 774,230 + -0.4 774,230 + -2.3 774,262 - +2.5 774,262 - +0.3 774,264 + -0.8 774,265 - +0.0 774,275 + +1.7
Or see this region's nucleotide sequence